data_8CT3 # _model_server_result.job_id XiU3zG4yrPNKTuJAGXr0rA _model_server_result.datetime_utc '2025-03-24 20:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ct3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1002}' # _entry.id 8CT3 # _exptl.entry_id 8CT3 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CT3 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C ND2 ASN 642 C ASN 642 1_555 F C1 NAG . C NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 D ND2 ASN 642 E ASN 642 1_555 J C1 NAG . E NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 312 n n C1 O1 NAG sing 313 n n C1 O5 NAG sing 314 n n C1 H1 NAG sing 315 n n C2 C3 NAG sing 316 n n C2 N2 NAG sing 317 n n C2 H2 NAG sing 318 n n C3 C4 NAG sing 319 n n C3 O3 NAG sing 320 n n C3 H3 NAG sing 321 n n C4 C5 NAG sing 322 n n C4 O4 NAG sing 323 n n C4 H4 NAG sing 324 n n C5 C6 NAG sing 325 n n C5 O5 NAG sing 326 n n C5 H5 NAG sing 327 n n C6 O6 NAG sing 328 n n C6 H61 NAG sing 329 n n C6 H62 NAG sing 330 n n C7 C8 NAG sing 331 n n C7 N2 NAG sing 332 n n C7 O7 NAG doub 333 n n C8 H81 NAG sing 334 n n C8 H82 NAG sing 335 n n C8 H83 NAG sing 336 n n N2 HN2 NAG sing 337 n n O1 HO1 NAG sing 338 n n O3 HO3 NAG sing 339 n n O4 HO4 NAG sing 340 n n O6 HO6 NAG sing 341 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8CT3 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CLR C 1 1001 201 CLR CLR . F 4 NAG C 1 1002 895 NAG NAG . G 3 CLR C 1 1003 901 CLR CLR . H 5 PIO C 1 1004 901 PIO PIO . I 3 CLR E 1 1001 201 CLR CLR . J 4 NAG E 1 1002 895 NAG NAG . K 3 CLR E 1 1003 901 CLR CLR . L 5 PIO E 1 1004 901 PIO PIO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 4 109.101 52.795 48.917 1 53.37 ? C1 NAG 1002 E 1 HETATM 2 C C2 NAG . . . J 4 107.599 53.057 48.82 1 50.6 ? C2 NAG 1002 E 1 HETATM 3 C C3 NAG . . . J 4 107.074 52.612 47.458 1 49.56 ? C3 NAG 1002 E 1 HETATM 4 C C4 NAG . . . J 4 107.876 53.263 46.339 1 50.79 ? C4 NAG 1002 E 1 HETATM 5 C C5 NAG . . . J 4 109.366 53 46.535 1 52.59 ? C5 NAG 1002 E 1 HETATM 6 C C6 NAG . . . J 4 110.231 53.72 45.527 1 53.29 ? C6 NAG 1002 E 1 HETATM 7 C C7 NAG . . . J 4 105.853 52.94 50.541 1 50.58 ? C7 NAG 1002 E 1 HETATM 8 C C8 NAG . . . J 4 105.228 52.105 51.617 1 50.74 ? C8 NAG 1002 E 1 HETATM 9 N N2 NAG . . . J 4 106.881 52.385 49.89 1 50.03 ? N2 NAG 1002 E 1 HETATM 10 O O3 NAG . . . J 4 105.7 52.965 47.342 1 48.33 ? O3 NAG 1002 E 1 HETATM 11 O O4 NAG . . . J 4 107.469 52.738 45.081 1 51.56 ? O4 NAG 1002 E 1 HETATM 12 O O5 NAG . . . J 4 109.777 53.453 47.834 1 56.4 ? O5 NAG 1002 E 1 HETATM 13 O O6 NAG . . . J 4 111.605 53.394 45.691 1 48.58 ? O6 NAG 1002 E 1 HETATM 14 O O7 NAG . . . J 4 105.446 54.066 50.272 1 46.43 ? O7 NAG 1002 E 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #