data_8CTB # _model_server_result.job_id HyF0SELK8vAavEvgw3vUgw _model_server_result.datetime_utc '2024-11-22 21:08:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ctb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8CTB # _exptl.entry_id 8CTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CTB _cell.length_a 97.983 _cell.length_b 137.232 _cell.length_c 178.304 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall 'I 2 2' _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 237 n n CS HCS1 MTA sing 238 n n CS HCS2 MTA sing 239 n n CS HCS3 MTA sing 240 n n S5' C5' MTA sing 241 n n C5' C4' MTA sing 242 n n C5' "H5'1" MTA sing 243 n n C5' "H5'2" MTA sing 244 n n C4' O4' MTA sing 245 n n C4' C3' MTA sing 246 n n C4' H4' MTA sing 247 n n O4' C1' MTA sing 248 n n C2' O2' MTA sing 249 n n C2' C3' MTA sing 250 n n C2' C1' MTA sing 251 n n C2' H2' MTA sing 252 n n O2' HO2' MTA sing 253 n n C3' O3' MTA sing 254 n n C3' H3' MTA sing 255 n n O3' H3T MTA sing 256 n n C1' N9 MTA sing 257 n n C1' H1' MTA sing 258 n n N9 C8 MTA sing 259 n y N9 C4 MTA sing 260 n y C8 N7 MTA doub 261 n y C8 H8 MTA sing 262 n n N7 C5 MTA sing 263 n y C5 C6 MTA sing 264 n y C5 C4 MTA doub 265 n y C6 N6 MTA sing 266 n n C6 N1 MTA doub 267 n y N6 H61 MTA sing 268 n n N6 H62 MTA sing 269 n n N1 C2 MTA sing 270 n y C2 N3 MTA doub 271 n y C2 H2 MTA sing 272 n n N3 C4 MTA sing 273 n y # _atom_sites.entry_id 8CTB _atom_sites.fract_transf_matrix[1][1] 0.010206 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PWX A 1 801 801 PWX FRA . D 4 MTA A 1 802 802 MTA MTA . E 5 HOH A 1 901 14 HOH HOH . E 5 HOH A 2 902 16 HOH HOH . E 5 HOH A 3 903 10 HOH HOH . E 5 HOH A 4 904 7 HOH HOH . E 5 HOH A 5 905 28 HOH HOH . E 5 HOH A 6 906 25 HOH HOH . E 5 HOH A 7 907 21 HOH HOH . E 5 HOH A 8 908 13 HOH HOH . E 5 HOH A 9 909 17 HOH HOH . E 5 HOH A 10 910 2 HOH HOH . E 5 HOH A 11 911 4 HOH HOH . E 5 HOH A 12 912 6 HOH HOH . E 5 HOH A 13 913 1 HOH HOH . E 5 HOH A 14 914 9 HOH HOH . E 5 HOH A 15 915 8 HOH HOH . E 5 HOH A 16 916 22 HOH HOH . E 5 HOH A 17 917 18 HOH HOH . E 5 HOH A 18 918 12 HOH HOH . E 5 HOH A 19 919 24 HOH HOH . E 5 HOH A 20 920 19 HOH HOH . E 5 HOH A 21 921 23 HOH HOH . E 5 HOH A 22 922 34 HOH HOH . E 5 HOH A 23 923 3 HOH HOH . E 5 HOH A 24 924 33 HOH HOH . E 5 HOH A 25 925 32 HOH HOH . F 5 HOH B 1 401 30 HOH HOH . F 5 HOH B 2 402 20 HOH HOH . F 5 HOH B 3 403 27 HOH HOH . F 5 HOH B 4 404 29 HOH HOH . F 5 HOH B 5 405 5 HOH HOH . F 5 HOH B 6 406 31 HOH HOH . F 5 HOH B 7 407 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . D 4 -27.253 -37.984 -5.669 1 40.04 ? CS MTA 802 A 1 HETATM 2 S S5' MTA . . . D 4 -28.369 -39.288 -6.235 1 45 ? S5' MTA 802 A 1 HETATM 3 C C5' MTA . . . D 4 -29.955 -38.416 -6.108 1 35.58 ? C5' MTA 802 A 1 HETATM 4 C C4' MTA . . . D 4 -30.031 -37.614 -4.818 1 40.22 ? C4' MTA 802 A 1 HETATM 5 O O4' MTA . . . D 4 -31.165 -36.74 -4.811 1 36.68 ? O4' MTA 802 A 1 HETATM 6 C C2' MTA . . . D 4 -31.594 -38.249 -3.113 1 39 ? C2' MTA 802 A 1 HETATM 7 O O2' MTA . . . D 4 -31.791 -38.315 -1.732 1 36.38 ? O2' MTA 802 A 1 HETATM 8 C C3' MTA . . . D 4 -30.151 -38.493 -3.574 1 37.38 ? C3' MTA 802 A 1 HETATM 9 O O3' MTA . . . D 4 -29.242 -38.022 -2.617 1 35.28 ? O3' MTA 802 A 1 HETATM 10 C C1' MTA . . . D 4 -31.816 -36.814 -3.583 1 32.52 ? C1' MTA 802 A 1 HETATM 11 N N9 MTA . . . D 4 -33.209 -36.467 -3.742 1 29.54 ? N9 MTA 802 A 1 HETATM 12 C C8 MTA . . . D 4 -34.173 -37.19 -4.388 1 31.95 ? C8 MTA 802 A 1 HETATM 13 N N7 MTA . . . D 4 -35.341 -36.622 -4.362 1 33.48 ? N7 MTA 802 A 1 HETATM 14 C C5 MTA . . . D 4 -35.143 -35.46 -3.661 1 29.72 ? C5 MTA 802 A 1 HETATM 15 C C6 MTA . . . D 4 -36.003 -34.413 -3.286 1 35.58 ? C6 MTA 802 A 1 HETATM 16 N N6 MTA . . . D 4 -37.296 -34.397 -3.604 1 35.49 ? N6 MTA 802 A 1 HETATM 17 N N1 MTA . . . D 4 -35.481 -33.396 -2.587 1 38.03 ? N1 MTA 802 A 1 HETATM 18 C C2 MTA . . . D 4 -34.187 -33.419 -2.276 1 37.89 ? C2 MTA 802 A 1 HETATM 19 N N3 MTA . . . D 4 -33.288 -34.343 -2.567 1 39.88 ? N3 MTA 802 A 1 HETATM 20 C C4 MTA . . . D 4 -33.822 -35.346 -3.265 1 35.51 ? C4 MTA 802 A 1 # _model_server_stats.io_time_ms 85 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 20 #