data_8CTE
#
_model_server_result.job_id            LA2D_pDPqiohJi0_hTAIAw 
_model_server_result.datetime_utc      '2025-02-05 04:04:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cte 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":1004}' 
#
_entry.id    8CTE 
#
_exptl.entry_id    8CTE 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              746.566 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CTE 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CTE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 V N N 
? 11 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 I ND2 ASN 642 P ASN 642 1_555 T C1 NAG . P NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale2 J ND2 ASN 642 T ASN 642 1_555 X C1 NAG . T NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 K C SER 86 S SER 86 1_555 K N P1L 87 S P1L 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 K C P1L 87 S P1L 87 1_555 K N GLN 88 S GLN 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 L C SER 86 O SER 86 1_555 L N P1L 87 O P1L 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 L C P1L 87 O P1L 87 1_555 L N GLN 88 O GLN 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 M C SER 86 R SER 86 1_555 M N P1L 87 R P1L 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale8 M C P1L 87 R P1L 87 1_555 M N GLN 88 R GLN 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 N C SER 86 M SER 86 1_555 N N P1L 87 M P1L 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale10 N C P1L 87 M P1L 87 1_555 N N GLN 88 M GLN 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C25 H49 O19 P3' 
_chem_comp.formula_weight    746.566 
_chem_comp.id                PIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'dioctanoyl l-alpha-phosphatidyl-d-myo-inositol 4,5-diphosphate' 
#
_atom_sites.entry_id                     8CTE 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 8 CLR L 1 501 501 CLR CLR . 
P 8 CLR L 1 502 502 CLR CLR . 
Q 9 AJP Q 1 501 502 AJP AJP . 
R 9 AJP Q 1 502 503 AJP AJP . 
S 8 CLR P 1 1001 201 CLR CLR . 
T 10 NAG P 1 1002 895 NAG NAG . 
U 8 CLR P 1 1003 901 CLR CLR . 
V 11 PIO P 1 1004 901 PIO PIO . 
W 8 CLR T 1 1001 201 CLR CLR . 
X 10 NAG T 1 1002 895 NAG NAG . 
Y 8 CLR T 1 1003 901 CLR CLR . 
Z 11 PIO T 1 1004 901 PIO PIO . 
AA 8 CLR S 1 301 2008 CLR CLR . 
BA 8 CLR R 1 301 2008 CLR CLR . 
CA 8 CLR M 1 301 2008 CLR CLR . 
DA 8 CLR M 1 302 2008 CLR CLR . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PIO . . . Z 11 204.953 215.23 113.599 1 49 ? C1 PIO 1004 T 1 
HETATM 2 O O1 PIO . . . Z 11 206.231 215.787 113.41 1 49 ? O1 PIO 1004 T 1 
HETATM 3 P P1 PIO . . . Z 11 206.882 216.702 114.617 1 49 ? P1 PIO 1004 T 1 
HETATM 4 C C2 PIO . . . Z 11 204.977 213.772 113.125 1 49 ? C2 PIO 1004 T 1 
HETATM 5 O O2 PIO . . . Z 11 205.462 213.736 111.803 1 49 ? O2 PIO 1004 T 1 
HETATM 6 C C3 PIO . . . Z 11 203.586 213.127 113.157 1 49 ? C3 PIO 1004 T 1 
HETATM 7 O O3 PIO . . . Z 11 203.672 211.849 112.574 1 49 ? O3 PIO 1004 T 1 
HETATM 8 C C4 PIO . . . Z 11 202.543 213.957 112.394 1 49 ? C4 PIO 1004 T 1 
HETATM 9 O O4 PIO . . . Z 11 201.268 213.406 112.614 1 49 ? O4 PIO 1004 T 1 
HETATM 10 P P4 PIO . . . Z 11 200.654 212.336 111.521 1 49 ? P4 PIO 1004 T 1 
HETATM 11 C C5 PIO . . . Z 11 202.526 215.421 112.856 1 49 ? C5 PIO 1004 T 1 
HETATM 12 O O5 PIO . . . Z 11 201.667 216.155 112.017 1 49 ? O5 PIO 1004 T 1 
HETATM 13 P P5 PIO . . . Z 11 200.162 216.538 112.573 1 49 ? P5 PIO 1004 T 1 
HETATM 14 C C6 PIO . . . Z 11 203.919 216.061 112.824 1 49 ? C6 PIO 1004 T 1 
HETATM 15 O O6 PIO . . . Z 11 203.842 217.343 113.399 1 49 ? O6 PIO 1004 T 1 
HETATM 16 O O11 PIO . . . Z 11 206.826 215.936 115.916 1 49 ? O11 PIO 1004 T 1 
HETATM 17 O O12 PIO . . . Z 11 206.094 217.982 114.755 1 49 ? O12 PIO 1004 T 1 
HETATM 18 O O13 PIO . . . Z 11 208.452 217.06 114.257 1 49 ? O13 PIO 1004 T 1 
HETATM 19 C C1A PIO . . . Z 11 209.086 213.536 114.495 1 49 ? C1A PIO 1004 T 1 
HETATM 20 O O1A PIO . . . Z 11 208.216 213.513 113.692 1 49 ? O1A PIO 1004 T 1 
HETATM 21 C C1B PIO . . . Z 11 213.402 214.635 114.264 1 49 ? C1B PIO 1004 T 1 
HETATM 22 O O1B PIO . . . Z 11 213.081 213.65 113.689 1 49 ? O1B PIO 1004 T 1 
HETATM 23 C C1C PIO . . . Z 11 209.469 216.314 114.861 1 49 ? C1C PIO 1004 T 1 
HETATM 24 C C2A PIO . . . Z 11 208.886 212.879 115.859 1 49 ? C2A PIO 1004 T 1 
HETATM 25 C C2B PIO . . . Z 11 214.878 214.9 114.554 1 49 ? C2B PIO 1004 T 1 
HETATM 26 C C2C PIO . . . Z 11 210.21 215.498 113.802 1 49 ? C2C PIO 1004 T 1 
HETATM 27 O O2C PIO . . . Z 11 210.301 214.158 114.193 1 49 ? O2C PIO 1004 T 1 
HETATM 28 C C3A PIO . . . Z 11 209.289 211.407 115.784 1 49 ? C3A PIO 1004 T 1 
HETATM 29 C C3B PIO . . . Z 11 215.658 213.592 114.437 1 49 ? C3B PIO 1004 T 1 
HETATM 30 C C3C PIO . . . Z 11 211.628 216.039 113.629 1 49 ? C3C PIO 1004 T 1 
HETATM 31 O O3C PIO . . . Z 11 212.425 215.552 114.669 1 49 ? O3C PIO 1004 T 1 
HETATM 32 O O41 PIO . . . Z 11 200.444 213.033 110.198 1 49 ? O41 PIO 1004 T 1 
HETATM 33 O O42 PIO . . . Z 11 201.616 211.186 111.339 1 49 ? O42 PIO 1004 T 1 
HETATM 34 O O43 PIO . . . Z 11 199.333 211.805 112.024 1 49 ? O43 PIO 1004 T 1 
HETATM 35 C C4A PIO . . . Z 11 210.812 211.289 115.795 1 49 ? C4A PIO 1004 T 1 
HETATM 36 C C4B PIO . . . Z 11 216.272 213.47 113.044 1 49 ? C4B PIO 1004 T 1 
HETATM 37 O O51 PIO . . . Z 11 199.184 215.464 112.163 1 49 ? O51 PIO 1004 T 1 
HETATM 38 O O52 PIO . . . Z 11 200.193 216.64 114.079 1 49 ? O52 PIO 1004 T 1 
HETATM 39 O O53 PIO . . . Z 11 199.73 217.861 111.989 1 49 ? O53 PIO 1004 T 1 
HETATM 40 C C5A PIO . . . Z 11 211.206 209.825 115.978 1 49 ? C5A PIO 1004 T 1 
HETATM 41 C C5B PIO . . . Z 11 216.023 212.062 112.506 1 49 ? C5B PIO 1004 T 1 
HETATM 42 C C6A PIO . . . Z 11 212.724 209.691 115.887 1 49 ? C6A PIO 1004 T 1 
HETATM 43 C C6B PIO . . . Z 11 214.989 212.124 111.383 1 49 ? C6B PIO 1004 T 1 
HETATM 44 C C7A PIO . . . Z 11 213.166 209.839 114.433 1 49 ? C7A PIO 1004 T 1 
HETATM 45 C C7B PIO . . . Z 11 214.509 210.715 111.034 1 49 ? C7B PIO 1004 T 1 
HETATM 46 C C8A PIO . . . Z 11 213.047 208.493 113.724 1 49 ? C8A PIO 1004 T 1 
HETATM 47 C C8B PIO . . . Z 11 215.702 209.828 110.684 1 49 ? C8B PIO 1004 T 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    144 
_model_server_stats.query_time_ms           1082 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           47 
#