data_8CTE # _model_server_result.job_id JhJoSwt9v0v28wYX-QgmVg _model_server_result.datetime_utc '2025-07-08 04:20:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":502}' # _entry.id 8CTE # _exptl.entry_id 8CTE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1229.312 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Digitonin _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CTE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetradecameric _pdbx_struct_assembly.oligomeric_count 14 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 Q N N ? 9 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 I ND2 ASN 642 P ASN 642 1_555 T C1 NAG . P NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 J ND2 ASN 642 T ASN 642 1_555 X C1 NAG . T NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 K C SER 86 S SER 86 1_555 K N P1L 87 S P1L 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 K C P1L 87 S P1L 87 1_555 K N GLN 88 S GLN 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 L C SER 86 O SER 86 1_555 L N P1L 87 O P1L 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 L C P1L 87 O P1L 87 1_555 L N GLN 88 O GLN 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 M C SER 86 R SER 86 1_555 M N P1L 87 R P1L 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 M C P1L 87 R P1L 87 1_555 M N GLN 88 R GLN 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 N C SER 86 M SER 86 1_555 N N P1L 87 M P1L 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 N C P1L 87 M P1L 87 1_555 N N GLN 88 M GLN 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C56 H92 O29' _chem_comp.formula_weight 1229.312 _chem_comp.id AJP _chem_comp.mon_nstd_flag . _chem_comp.name Digitonin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 AJP sing 1 n n C02 C85 AJP sing 2 n n C02 C03 AJP sing 3 n n C85 O84 AJP sing 4 n n C03 C04 AJP sing 5 n n O84 C05 AJP sing 6 n n C05 C04 AJP sing 7 n n C05 O09 AJP sing 8 n n C05 C06 AJP sing 9 n n O09 C08 AJP sing 10 n n C08 C10 AJP sing 11 n n C08 C07 AJP sing 12 n n C83 C06 AJP sing 13 n n C06 C07 AJP sing 14 n n C10 O82 AJP sing 15 n n C10 C11 AJP sing 16 n n C07 C12 AJP sing 17 n n C11 C12 AJP sing 18 n n C11 C16 AJP sing 19 n n C12 C81 AJP sing 20 n n C12 C13 AJP sing 21 n n C17 C16 AJP sing 22 n n C17 C18 AJP sing 23 n n C13 C14 AJP sing 24 n n C16 C15 AJP sing 25 n n C15 C14 AJP sing 26 n n C15 C20 AJP sing 27 n n C18 C19 AJP sing 28 n n C19 C20 AJP sing 29 n n C19 C24 AJP sing 30 n n C20 C21 AJP sing 31 n n C20 C80 AJP sing 32 n n C21 C22 AJP sing 33 n n C24 C23 AJP sing 34 n n O33 C32 AJP sing 35 n n C23 C22 AJP sing 36 n n C23 O25 AJP sing 37 n n C32 C30 AJP sing 38 n n C22 O79 AJP sing 39 n n C30 O31 AJP sing 40 n n C30 C29 AJP sing 41 n n O31 C26 AJP sing 42 n n C26 O25 AJP sing 43 n n C26 C27 AJP sing 44 n n C29 C28 AJP sing 45 n n C29 O34 AJP sing 46 n n C41 C39 AJP sing 47 n n C41 O42 AJP sing 48 n n C28 C27 AJP sing 49 n n C28 O77 AJP sing 50 n n C27 O78 AJP sing 51 n n O40 C39 AJP sing 52 n n O40 C35 AJP sing 53 n n C39 C38 AJP sing 54 n n O34 C35 AJP sing 55 n n C35 C36 AJP sing 56 n n C38 O43 AJP sing 57 n n C38 C37 AJP sing 58 n n C36 C37 AJP sing 59 n n C36 O54 AJP sing 60 n n C37 O44 AJP sing 61 n n O54 C55 AJP sing 62 n n O76 C56 AJP sing 63 n n O50 C49 AJP sing 64 n n O50 C45 AJP sing 65 n n C56 C55 AJP sing 66 n n C56 C57 AJP sing 67 n n O44 C45 AJP sing 68 n n C55 O60 AJP sing 69 n n C49 C48 AJP sing 70 n n C45 C46 AJP sing 71 n n O60 C59 AJP sing 72 n n O63 C58 AJP sing 73 n n O75 C66 AJP sing 74 n n O64 C57 AJP sing 75 n n O64 C65 AJP sing 76 n n C57 C58 AJP sing 77 n n O62 C61 AJP sing 78 n n C48 O51 AJP sing 79 n n C48 C47 AJP sing 80 n n C58 C59 AJP sing 81 n n C59 C61 AJP sing 82 n n C46 C47 AJP sing 83 n n C46 O53 AJP sing 84 n n C66 C65 AJP sing 85 n n C66 C67 AJP sing 86 n n C65 O70 AJP sing 87 n n C47 O52 AJP sing 88 n n O74 C67 AJP sing 89 n n C67 C68 AJP sing 90 n n O70 C69 AJP sing 91 n n C68 C69 AJP sing 92 n n C68 O73 AJP sing 93 n n C69 C71 AJP sing 94 n n C71 O72 AJP sing 95 n n C01 H1 AJP sing 96 n n C01 H2 AJP sing 97 n n C01 H3 AJP sing 98 n n C02 H4 AJP sing 99 n n C03 H5 AJP sing 100 n n C03 H6 AJP sing 101 n n C04 H7 AJP sing 102 n n C04 H8 AJP sing 103 n n C06 H9 AJP sing 104 n n C07 H10 AJP sing 105 n n C08 H11 AJP sing 106 n n C10 H12 AJP sing 107 n n C11 H13 AJP sing 108 n n C13 H14 AJP sing 109 n n C13 H15 AJP sing 110 n n C14 H16 AJP sing 111 n n C14 H17 AJP sing 112 n n C15 H18 AJP sing 113 n n C16 H19 AJP sing 114 n n C17 H20 AJP sing 115 n n C17 H21 AJP sing 116 n n C18 H22 AJP sing 117 n n C18 H23 AJP sing 118 n n C19 H24 AJP sing 119 n n C21 H25 AJP sing 120 n n C21 H26 AJP sing 121 n n C22 H27 AJP sing 122 n n C23 H28 AJP sing 123 n n C24 H29 AJP sing 124 n n C24 H30 AJP sing 125 n n C26 H31 AJP sing 126 n n C27 H32 AJP sing 127 n n C28 H33 AJP sing 128 n n C29 H34 AJP sing 129 n n C30 H35 AJP sing 130 n n C32 H36 AJP sing 131 n n C32 H37 AJP sing 132 n n O33 H38 AJP sing 133 n n C35 H39 AJP sing 134 n n C36 H40 AJP sing 135 n n C37 H41 AJP sing 136 n n C38 H42 AJP sing 137 n n C39 H43 AJP sing 138 n n C41 H44 AJP sing 139 n n C41 H45 AJP sing 140 n n O42 H46 AJP sing 141 n n O43 H47 AJP sing 142 n n C45 H48 AJP sing 143 n n C46 H49 AJP sing 144 n n C47 H50 AJP sing 145 n n C48 H51 AJP sing 146 n n C49 H52 AJP sing 147 n n C49 H53 AJP sing 148 n n O51 H54 AJP sing 149 n n O52 H55 AJP sing 150 n n O53 H56 AJP sing 151 n n C55 H57 AJP sing 152 n n C56 H58 AJP sing 153 n n C57 H59 AJP sing 154 n n C58 H60 AJP sing 155 n n C59 H61 AJP sing 156 n n C61 H62 AJP sing 157 n n C61 H63 AJP sing 158 n n O62 H64 AJP sing 159 n n O63 H65 AJP sing 160 n n C65 H66 AJP sing 161 n n C66 H67 AJP sing 162 n n C67 H68 AJP sing 163 n n C68 H69 AJP sing 164 n n C69 H70 AJP sing 165 n n C71 H71 AJP sing 166 n n C71 H72 AJP sing 167 n n O72 H73 AJP sing 168 n n O73 H74 AJP sing 169 n n O74 H75 AJP sing 170 n n O75 H76 AJP sing 171 n n O76 H77 AJP sing 172 n n O77 H78 AJP sing 173 n n O78 H79 AJP sing 174 n n O79 H80 AJP sing 175 n n C80 H81 AJP sing 176 n n C80 H82 AJP sing 177 n n C80 H83 AJP sing 178 n n C81 H84 AJP sing 179 n n C81 H85 AJP sing 180 n n C81 H86 AJP sing 181 n n O82 H87 AJP sing 182 n n C83 H88 AJP sing 183 n n C83 H89 AJP sing 184 n n C83 H90 AJP sing 185 n n C85 H91 AJP sing 186 n n C85 H92 AJP sing 187 n n # _atom_sites.entry_id 8CTE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 8 CLR L 1 501 501 CLR CLR . P 8 CLR L 1 502 502 CLR CLR . Q 9 AJP Q 1 501 502 AJP AJP . R 9 AJP Q 1 502 503 AJP AJP . S 8 CLR P 1 1001 201 CLR CLR . T 10 NAG P 1 1002 895 NAG NAG . U 8 CLR P 1 1003 901 CLR CLR . V 11 PIO P 1 1004 901 PIO PIO . W 8 CLR T 1 1001 201 CLR CLR . X 10 NAG T 1 1002 895 NAG NAG . Y 8 CLR T 1 1003 901 CLR CLR . Z 11 PIO T 1 1004 901 PIO PIO . AA 8 CLR S 1 301 2008 CLR CLR . BA 8 CLR R 1 301 2008 CLR CLR . CA 8 CLR M 1 301 2008 CLR CLR . DA 8 CLR M 1 302 2008 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 AJP . . . R 9 209.013 146.205 226.384 1 32.82 ? C01 AJP 502 Q 1 HETATM 2 C C02 AJP . . . R 9 210.033 147.092 227.071 1 33.43 ? C02 AJP 502 Q 1 HETATM 3 C C03 AJP . . . R 9 209.859 147.081 228.588 1 36.43 ? C03 AJP 502 Q 1 HETATM 4 C C04 AJP . . . R 9 210.739 148.121 229.257 1 35.3 ? C04 AJP 502 Q 1 HETATM 5 C C05 AJP . . . R 9 210.527 149.483 228.649 1 35.24 ? C05 AJP 502 Q 1 HETATM 6 C C06 AJP . . . R 9 211.342 150.632 229.229 1 36.38 ? C06 AJP 502 Q 1 HETATM 7 C C07 AJP . . . R 9 210.487 151.859 228.863 1 38.71 ? C07 AJP 502 Q 1 HETATM 8 C C08 AJP . . . R 9 209.119 151.251 228.461 1 34.84 ? C08 AJP 502 Q 1 HETATM 9 O O09 AJP . . . R 9 209.184 149.876 228.881 1 37.53 ? O09 AJP 502 Q 1 HETATM 10 C C10 AJP . . . R 9 208.066 152.022 229.27 1 36.33 ? C10 AJP 502 Q 1 HETATM 11 C C11 AJP . . . R 9 208.754 153.373 229.487 1 34.14 ? C11 AJP 502 Q 1 HETATM 12 C C12 AJP . . . R 9 210.167 152.95 229.926 1 39.03 ? C12 AJP 502 Q 1 HETATM 13 C C13 AJP . . . R 9 211.048 154.192 229.863 1 35.84 ? C13 AJP 502 Q 1 HETATM 14 C C14 AJP . . . R 9 210.477 155.33 230.711 1 35.93 ? C14 AJP 502 Q 1 HETATM 15 C C15 AJP . . . R 9 209.015 155.662 230.382 1 38.83 ? C15 AJP 502 Q 1 HETATM 16 C C16 AJP . . . R 9 208.127 154.398 230.417 1 35.31 ? C16 AJP 502 Q 1 HETATM 17 C C17 AJP . . . R 9 206.689 154.719 230.023 1 29.86 ? C17 AJP 502 Q 1 HETATM 18 C C18 AJP . . . R 9 206.11 155.84 230.879 1 34.59 ? C18 AJP 502 Q 1 HETATM 19 C C19 AJP . . . R 9 206.97 157.094 230.781 1 36.64 ? C19 AJP 502 Q 1 HETATM 20 C C20 AJP . . . R 9 208.434 156.842 231.217 1 37.56 ? C20 AJP 502 Q 1 HETATM 21 C C21 AJP . . . R 9 209.219 158.139 230.94 1 36.97 ? C21 AJP 502 Q 1 HETATM 22 C C22 AJP . . . R 9 208.64 159.345 231.663 1 39.33 ? C22 AJP 502 Q 1 HETATM 23 C C23 AJP . . . R 9 207.172 159.553 231.321 1 35.57 ? C23 AJP 502 Q 1 HETATM 24 C C24 AJP . . . R 9 206.348 158.29 231.516 1 34.31 ? C24 AJP 502 Q 1 HETATM 25 O O25 AJP . . . R 9 206.679 160.611 232.157 1 41.76 ? O25 AJP 502 Q 1 HETATM 26 C C26 AJP . . . R 9 205.462 161.213 231.794 1 39.78 ? C26 AJP 502 Q 1 HETATM 27 C C27 AJP . . . R 9 204.834 161.849 233.024 1 38.31 ? C27 AJP 502 Q 1 HETATM 28 C C28 AJP . . . R 9 203.939 163.001 232.6 1 38.37 ? C28 AJP 502 Q 1 HETATM 29 C C29 AJP . . . R 9 203.349 162.732 231.223 1 40.48 ? C29 AJP 502 Q 1 HETATM 30 C C30 AJP . . . R 9 204.445 162.619 230.168 1 35.76 ? C30 AJP 502 Q 1 HETATM 31 O O31 AJP . . . R 9 205.67 162.2 230.797 1 36.6 ? O31 AJP 502 Q 1 HETATM 32 C C32 AJP . . . R 9 204.737 163.918 229.457 1 37.15 ? C32 AJP 502 Q 1 HETATM 33 O O33 AJP . . . R 9 205.281 163.674 228.162 1 36.87 ? O33 AJP 502 Q 1 HETATM 34 O O34 AJP . . . R 9 202.494 163.831 230.885 1 43.78 ? O34 AJP 502 Q 1 HETATM 35 O O77 AJP . . . R 9 204.691 164.214 232.597 1 44.11 ? O77 AJP 502 Q 1 HETATM 36 O O78 AJP . . . R 9 204.104 160.871 233.76 1 41.06 ? O78 AJP 502 Q 1 HETATM 37 O O79 AJP . . . R 9 209.381 160.518 231.302 1 43.65 ? O79 AJP 502 Q 1 HETATM 38 C C80 AJP . . . R 9 208.51 156.55 232.725 1 34.38 ? C80 AJP 502 Q 1 HETATM 39 C C81 AJP . . . R 9 210.173 152.379 231.348 1 35.09 ? C81 AJP 502 Q 1 HETATM 40 O O82 AJP . . . R 9 207.768 151.385 230.5 1 38.89 ? O82 AJP 502 Q 1 HETATM 41 C C83 AJP . . . R 9 212.799 150.708 228.791 1 34.11 ? C83 AJP 502 Q 1 HETATM 42 O O84 AJP . . . R 9 210.787 149.426 227.249 1 41.01 ? O84 AJP 502 Q 1 HETATM 43 C C85 AJP . . . R 9 209.926 148.519 226.559 1 37.82 ? C85 AJP 502 Q 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #