data_8CTF # _model_server_result.job_id zWdtgwGvIQHSTR6CvudPRQ _model_server_result.datetime_utc '2024-11-29 04:12:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ctf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8CTF # _exptl.entry_id 8CTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 155.108 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-hydroxy-4-oxo-1,4-dihydropyridine-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CTF _cell.length_a 75.66 _cell.length_b 75.66 _cell.length_c 119.451 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall 'P 62 2 (x,y,z+1/3)' _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 41 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc2 A OE1 GLU 74 A GLU 80 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A OD2 ASP 102 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc4 A OD1 ASP 102 A ASP 108 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 A OE2 GLU 113 A GLU 119 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 A O ILE 114 A ILE 120 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc7 C O01 Q3O . A Q3O 202 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc8 C O11 Q3O . A Q3O 202 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc9 C O01 Q3O . A Q3O 202 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc10 C O05 Q3O . A Q3O 202 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc11 E MN MN . A MN 204 1_555 F O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc12 E MN MN . A MN 204 1_555 F O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? # _chem_comp.formula 'C6 H5 N O4' _chem_comp.formula_weight 155.108 _chem_comp.id Q3O _chem_comp.mon_nstd_flag . _chem_comp.name '3-hydroxy-4-oxo-1,4-dihydropyridine-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O06 C04 Q3O doub 283 n n N07 C08 Q3O sing 284 n n N07 C03 Q3O sing 285 n n C04 C03 Q3O sing 286 n n C04 O05 Q3O sing 287 n n C08 C09 Q3O doub 288 n n C03 C02 Q3O doub 289 n n C09 C10 Q3O sing 290 n n C02 C10 Q3O sing 291 n n C02 O01 Q3O sing 292 n n C10 O11 Q3O doub 293 n n C08 H081 Q3O sing 294 n n C09 H091 Q3O sing 295 n n N07 H071 Q3O sing 296 n n O01 H1 Q3O sing 297 n n O05 H2 Q3O sing 298 n n # _atom_sites.entry_id 8CTF _atom_sites.fract_transf_matrix[1][1] 0.013217 _atom_sites.fract_transf_matrix[1][2] 0.007631 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 201 1 ACT ACT . C 3 Q3O A 1 202 1 Q3O NBR . D 4 MN A 1 203 301 MN MN . E 4 MN A 1 204 302 MN MN . F 5 HOH A 1 301 4 HOH HOH . F 5 HOH A 2 302 103 HOH HOH . F 5 HOH A 3 303 25 HOH HOH . F 5 HOH A 4 304 53 HOH HOH . F 5 HOH A 5 305 102 HOH HOH . F 5 HOH A 6 306 69 HOH HOH . F 5 HOH A 7 307 101 HOH HOH . F 5 HOH A 8 308 7 HOH HOH . F 5 HOH A 9 309 26 HOH HOH . F 5 HOH A 10 310 10 HOH HOH . F 5 HOH A 11 311 18 HOH HOH . F 5 HOH A 12 312 95 HOH HOH . F 5 HOH A 13 313 11 HOH HOH . F 5 HOH A 14 314 71 HOH HOH . F 5 HOH A 15 315 6 HOH HOH . F 5 HOH A 16 316 36 HOH HOH . F 5 HOH A 17 317 77 HOH HOH . F 5 HOH A 18 318 37 HOH HOH . F 5 HOH A 19 319 5 HOH HOH . F 5 HOH A 20 320 2 HOH HOH . F 5 HOH A 21 321 50 HOH HOH . F 5 HOH A 22 322 100 HOH HOH . F 5 HOH A 23 323 9 HOH HOH . F 5 HOH A 24 324 13 HOH HOH . F 5 HOH A 25 325 15 HOH HOH . F 5 HOH A 26 326 1 HOH HOH . F 5 HOH A 27 327 48 HOH HOH . F 5 HOH A 28 328 40 HOH HOH . F 5 HOH A 29 329 39 HOH HOH . F 5 HOH A 30 330 63 HOH HOH . F 5 HOH A 31 331 66 HOH HOH . F 5 HOH A 32 332 16 HOH HOH . F 5 HOH A 33 333 105 HOH HOH . F 5 HOH A 34 334 75 HOH HOH . F 5 HOH A 35 335 14 HOH HOH . F 5 HOH A 36 336 17 HOH HOH . F 5 HOH A 37 337 27 HOH HOH . F 5 HOH A 38 338 107 HOH HOH . F 5 HOH A 39 339 8 HOH HOH . F 5 HOH A 40 340 38 HOH HOH . F 5 HOH A 41 341 74 HOH HOH . F 5 HOH A 42 342 99 HOH HOH . F 5 HOH A 43 343 111 HOH HOH . F 5 HOH A 44 344 110 HOH HOH . F 5 HOH A 45 345 34 HOH HOH . F 5 HOH A 46 346 108 HOH HOH . F 5 HOH A 47 347 19 HOH HOH . F 5 HOH A 48 348 67 HOH HOH . F 5 HOH A 49 349 29 HOH HOH . F 5 HOH A 50 350 46 HOH HOH . F 5 HOH A 51 351 45 HOH HOH . F 5 HOH A 52 352 68 HOH HOH . F 5 HOH A 53 353 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 Q3O . . . C 3 19.752 17.374 -13.436 1 45.31 ? C02 Q3O 202 A 1 HETATM 2 C C03 Q3O . . . C 3 19.465 17.351 -14.939 1 55.52 ? C03 Q3O 202 A 1 HETATM 3 C C04 Q3O . . . C 3 18.27 16.596 -15.518 1 60.56 ? C04 Q3O 202 A 1 HETATM 4 C C08 Q3O . . . C 3 21.539 18.819 -15.358 1 69.38 ? C08 Q3O 202 A 1 HETATM 5 C C09 Q3O . . . C 3 21.83 18.847 -13.861 1 58.14 ? C09 Q3O 202 A 1 HETATM 6 C C10 Q3O . . . C 3 20.934 18.125 -12.918 1 51.46 ? C10 Q3O 202 A 1 HETATM 7 N N07 Q3O . . . C 3 20.364 18.073 -15.877 1 63.7 ? N07 Q3O 202 A 1 HETATM 8 O O01 Q3O . . . C 3 18.915 16.697 -12.542 1 56.66 ? O01 Q3O 202 A 1 HETATM 9 O O05 Q3O . . . C 3 17.323 16.215 -14.779 1 57.12 -1 O05 Q3O 202 A 1 HETATM 10 O O06 Q3O . . . C 3 18.232 16.36 -16.755 1 67.4 ? O06 Q3O 202 A 1 HETATM 11 O O11 Q3O . . . C 3 21.171 18.154 -11.757 1 52.26 ? O11 Q3O 202 A 1 HETATM 12 H H081 Q3O . . . C 3 22.193 19.346 -16.042 1 83.5 ? H081 Q3O 202 A 1 HETATM 13 H H091 Q3O . . . C 3 22.687 19.392 -13.485 1 70.02 ? H091 Q3O 202 A 1 HETATM 14 H H071 Q3O . . . C 3 20.177 18.057 -16.861 1 76.69 ? H071 Q3O 202 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #