data_8CTT # _model_server_result.job_id B57wab4n4wAnpcOouCL1SA _model_server_result.datetime_utc '2024-10-19 05:24:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ctt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":207}' # _entry.id 8CTT # _exptl.entry_id 8CTT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CTT _cell.length_a 67.765 _cell.length_b 67.765 _cell.length_c 88.385 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall 'I 4' _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,W 1 1 A,C,D,E,F,G,H,I,J,K,W 1 2 A,C,D,E,F,G,H,I,J,K,W 1 3 A,C,D,E,F,G,H,I,J,K,W 1 4 B,L,M,N,O,P,Q,R,S,T,U,V,X 2 1 B,L,M,N,O,P,Q,R,S,T,U,V,X 2 2 B,L,M,N,O,P,Q,R,S,T,U,V,X 2 3 B,L,M,N,O,P,Q,R,S,T,U,V,X 2 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 45 A THR 63 1_555 I K K . A K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc2 A O THR 45 A THR 63 1_555 I K K . A K 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? metalc ? metalc3 A O THR 45 A THR 63 1_555 J K K . A K 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc4 A OG1 THR 45 A THR 63 1_555 J K K . A K 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc5 A O THR 45 A THR 63 1_555 J K K . A K 208 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc6 A OG1 THR 45 A THR 63 1_555 J K K . A K 208 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc7 A O VAL 46 A VAL 64 1_555 H K K . A K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc8 A O VAL 46 A VAL 64 1_555 H K K . A K 206 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc9 A O VAL 46 A VAL 64 1_555 I K K . A K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc10 A O VAL 46 A VAL 64 1_555 I K K . A K 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc11 A O GLY 47 A GLY 65 1_555 G K K . A K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc12 A O GLY 47 A GLY 65 1_555 G K K . A K 205 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc13 A O GLY 47 A GLY 65 1_555 H K K . A K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc14 A O GLY 47 A GLY 65 1_555 H K K . A K 206 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc15 A O TYR 48 A TYR 66 1_555 G K K . A K 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc16 A O TYR 48 A TYR 66 1_555 G K K . A K 205 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc17 A O GLY 49 A GLY 67 1_555 K K K . A K 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.162 ? metalc ? metalc18 K K K . A K 209 1_555 W O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc19 K K K . A K 209 1_555 W O HOH . A HOH 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc20 K K K . A K 209 1_555 W O HOH . A HOH 316 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.102 ? metalc ? metalc21 K K K . A K 209 1_555 W O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc22 K K K . A K 209 1_555 W O HOH . A HOH 322 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.043 ? metalc ? metalc23 K K K . A K 209 1_555 W O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc24 K K K . A K 209 1_555 W O HOH . A HOH 327 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.315 ? metalc ? metalc25 K K K . A K 209 1_555 W O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc26 K K K . A K 209 1_555 W O HOH . A HOH 328 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc27 B O THR 45 B THR 63 1_555 U K K . B K 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc28 B O THR 45 B THR 63 1_555 U K K . B K 210 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.623 ? metalc ? metalc29 B O THR 45 B THR 63 1_555 V K K . B K 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc30 B OG1 THR 45 B THR 63 1_555 V K K . B K 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc31 B O THR 45 B THR 63 1_555 V K K . B K 211 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc32 B OG1 THR 45 B THR 63 1_555 V K K . B K 211 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc33 B O VAL 46 B VAL 64 1_555 T K K . B K 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc34 B O VAL 46 B VAL 64 1_555 T K K . B K 209 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc35 B O VAL 46 B VAL 64 1_555 U K K . B K 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc36 B O VAL 46 B VAL 64 1_555 U K K . B K 210 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc37 B O GLY 47 B GLY 65 1_555 S K K . B K 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc38 B O GLY 47 B GLY 65 1_555 S K K . B K 208 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc39 B O GLY 47 B GLY 65 1_555 T K K . B K 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc40 B O GLY 47 B GLY 65 1_555 T K K . B K 209 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc41 B O TYR 48 B TYR 66 1_555 S K K . B K 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc42 B O TYR 48 B TYR 66 1_555 S K K . B K 208 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 205 n n C1 H11 MPD sing 206 n n C1 H12 MPD sing 207 n n C1 H13 MPD sing 208 n n C2 O2 MPD sing 209 n n C2 CM MPD sing 210 n n C2 C3 MPD sing 211 n n O2 HO2 MPD sing 212 n n CM HM1 MPD sing 213 n n CM HM2 MPD sing 214 n n CM HM3 MPD sing 215 n n C3 C4 MPD sing 216 n n C3 H31 MPD sing 217 n n C3 H32 MPD sing 218 n n C4 O4 MPD sing 219 n n C4 C5 MPD sing 220 n n C4 H4 MPD sing 221 n n O4 HO4 MPD sing 222 n n C5 H51 MPD sing 223 n n C5 H52 MPD sing 224 n n C5 H53 MPD sing 225 n n # _atom_sites.entry_id 8CTT _atom_sites.fract_transf_matrix[1][1] 0.014757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 201 1 MPD MPD . D 2 MPD A 1 202 3 MPD MPD . E 2 MPD A 1 203 11 MPD MPD . F 2 MPD A 1 204 12 MPD MPD . G 3 K A 1 205 1 K K . H 3 K A 1 206 2 K K . I 3 K A 1 207 3 K K . J 3 K A 1 208 4 K K . K 3 K A 1 209 9 K K . L 2 MPD B 1 201 5 MPD MPD . M 2 MPD B 1 202 6 MPD MPD . N 2 MPD B 1 203 9 MPD MPD . O 2 MPD B 1 204 13 MPD MPD . P 2 MPD B 1 205 16 MPD MPD . Q 2 MPD B 1 206 17 MPD MPD . R 2 MPD B 1 207 21 MPD MPD . S 3 K B 1 208 5 K K . T 3 K B 1 209 6 K K . U 3 K B 1 210 7 K K . V 3 K B 1 211 8 K K . W 4 HOH A 1 301 11 HOH HOH . W 4 HOH A 2 302 7 HOH HOH . W 4 HOH A 3 303 2 HOH HOH . W 4 HOH A 4 304 16 HOH HOH . W 4 HOH A 5 305 5 HOH HOH . W 4 HOH A 6 306 46 HOH HOH . W 4 HOH A 7 307 12 HOH HOH . W 4 HOH A 8 308 6 HOH HOH . W 4 HOH A 9 309 23 HOH HOH . W 4 HOH A 10 310 26 HOH HOH . W 4 HOH A 11 311 14 HOH HOH . W 4 HOH A 12 312 3 HOH HOH . W 4 HOH A 13 313 27 HOH HOH . W 4 HOH A 14 314 24 HOH HOH . W 4 HOH A 15 315 36 HOH HOH . W 4 HOH A 16 316 19 HOH HOH . W 4 HOH A 17 317 20 HOH HOH . W 4 HOH A 18 318 21 HOH HOH . W 4 HOH A 19 319 4 HOH HOH . W 4 HOH A 20 320 48 HOH HOH . W 4 HOH A 21 321 38 HOH HOH . W 4 HOH A 22 322 47 HOH HOH . W 4 HOH A 23 323 35 HOH HOH . W 4 HOH A 24 324 52 HOH HOH . W 4 HOH A 25 325 42 HOH HOH . W 4 HOH A 26 326 30 HOH HOH . W 4 HOH A 27 327 40 HOH HOH . W 4 HOH A 28 328 44 HOH HOH . W 4 HOH A 29 329 41 HOH HOH . X 4 HOH B 1 301 51 HOH HOH . X 4 HOH B 2 302 1 HOH HOH . X 4 HOH B 3 303 18 HOH HOH . X 4 HOH B 4 304 39 HOH HOH . X 4 HOH B 5 305 43 HOH HOH . X 4 HOH B 6 306 9 HOH HOH . X 4 HOH B 7 307 25 HOH HOH . X 4 HOH B 8 308 37 HOH HOH . X 4 HOH B 9 309 15 HOH HOH . X 4 HOH B 10 310 10 HOH HOH . X 4 HOH B 11 311 17 HOH HOH . X 4 HOH B 12 312 8 HOH HOH . X 4 HOH B 13 313 13 HOH HOH . X 4 HOH B 14 314 53 HOH HOH . X 4 HOH B 15 315 29 HOH HOH . X 4 HOH B 16 316 22 HOH HOH . X 4 HOH B 17 317 33 HOH HOH . X 4 HOH B 18 318 32 HOH HOH . X 4 HOH B 19 319 34 HOH HOH . X 4 HOH B 20 320 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . R 2 -7.613 3.348 -31.27 1 47.51 ? C1 MPD 207 B 1 HETATM 2 C C2 MPD . . . R 2 -6.675 3.04 -32.414 1 52.65 ? C2 MPD 207 B 1 HETATM 3 O O2 MPD . . . R 2 -6.206 1.684 -32.192 1 65.92 ? O2 MPD 207 B 1 HETATM 4 C CM MPD . . . R 2 -7.473 3.093 -33.711 1 62.41 ? CM MPD 207 B 1 HETATM 5 C C3 MPD . . . R 2 -5.563 4.093 -32.476 1 55.11 ? C3 MPD 207 B 1 HETATM 6 C C4 MPD . . . R 2 -4.184 3.534 -32.785 1 77.65 ? C4 MPD 207 B 1 HETATM 7 O O4 MPD . . . R 2 -3.826 3.894 -34.103 1 78.94 ? O4 MPD 207 B 1 HETATM 8 C C5 MPD . . . R 2 -3.117 4.08 -31.844 1 54.47 ? C5 MPD 207 B 1 HETATM 9 H H11 MPD . . . R 2 -7.764 4.426 -31.204 1 57.01 ? H11 MPD 207 B 1 HETATM 10 H H12 MPD . . . R 2 -7.181 2.984 -30.338 1 57.01 ? H12 MPD 207 B 1 HETATM 11 H H13 MPD . . . R 2 -8.571 2.857 -31.443 1 57.01 ? H13 MPD 207 B 1 HETATM 12 H HO2 MPD . . . R 2 -5.652 1.402 -32.949 1 79.1 ? HO2 MPD 207 B 1 HETATM 13 H HM1 MPD . . . R 2 -7.593 4.131 -34.021 1 74.89 ? HM1 MPD 207 B 1 HETATM 14 H HM2 MPD . . . R 2 -8.454 2.645 -33.553 1 74.89 ? HM2 MPD 207 B 1 HETATM 15 H HM3 MPD . . . R 2 -6.942 2.541 -34.486 1 74.89 ? HM3 MPD 207 B 1 HETATM 16 H H31 MPD . . . R 2 -5.821 4.825 -33.241 1 66.13 ? H31 MPD 207 B 1 HETATM 17 H H32 MPD . . . R 2 -5.521 4.61 -31.517 1 66.13 ? H32 MPD 207 B 1 HETATM 18 H H4 MPD . . . R 2 -4.233 2.452 -32.666 1 93.18 ? H4 MPD 207 B 1 HETATM 19 H HO4 MPD . . . R 2 -3.673 3.09 -34.643 1 94.73 ? HO4 MPD 207 B 1 HETATM 20 H H51 MPD . . . R 2 -2.228 4.343 -32.416 1 65.36 ? H51 MPD 207 B 1 HETATM 21 H H52 MPD . . . R 2 -2.863 3.322 -31.104 1 65.36 ? H52 MPD 207 B 1 HETATM 22 H H53 MPD . . . R 2 -3.499 4.968 -31.338 1 65.36 ? H53 MPD 207 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #