data_8CTV # _model_server_result.job_id BaHChDlMrrAKPhgmZUm7Mg _model_server_result.datetime_utc '2025-09-04 16:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ctv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 8CTV # _exptl.entry_id 8CTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CTV _cell.length_a 69.123 _cell.length_b 69.123 _cell.length_c 91.847 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall 'I 4' _symmetry.space_group_name_H-M 'I 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,T 1 1,2,3,4 B,K,L,M,N,O,P,Q,R,S,U 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 45 A THR 63 1_555 H TL TL . A TL 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc2 A O THR 45 A THR 63 1_555 H TL TL . A TL 206 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc3 A O THR 45 A THR 63 1_555 I TL TL . A TL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.24 ? metalc ? metalc4 A OG1 THR 45 A THR 63 1_555 I TL TL . A TL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc5 A O THR 45 A THR 63 1_555 I TL TL . A TL 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.24 ? metalc ? metalc6 A OG1 THR 45 A THR 63 1_555 I TL TL . A TL 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc7 A O VAL 46 A VAL 64 1_555 G TL TL . A TL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc8 A O VAL 46 A VAL 64 1_555 G TL TL . A TL 205 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc9 A O VAL 46 A VAL 64 1_555 H TL TL . A TL 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc10 A O VAL 46 A VAL 64 1_555 H TL TL . A TL 206 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc11 A O GLY 47 A GLY 65 1_555 F TL TL . A TL 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.269 ? metalc ? metalc12 A O GLY 47 A GLY 65 1_555 F TL TL . A TL 204 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.269 ? metalc ? metalc13 A O GLY 47 A GLY 65 1_555 G TL TL . A TL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc14 A O GLY 47 A GLY 65 1_555 G TL TL . A TL 205 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc15 A O TYR 48 A TYR 66 1_555 F TL TL . A TL 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc16 A O TYR 48 A TYR 66 1_555 F TL TL . A TL 204 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc17 I TL TL . A TL 207 1_555 T O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc18 I TL TL . A TL 207 1_555 T O HOH . A HOH 319 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc19 J NA NA . A NA 208 1_555 T O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc20 B O THR 45 B THR 63 1_555 Q TL TL . B TL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc21 B O THR 45 B THR 63 1_555 Q TL TL . B TL 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc22 B O THR 45 B THR 63 1_555 R TL TL . B TL 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc23 B OG1 THR 45 B THR 63 1_555 R TL TL . B TL 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc24 B O THR 45 B THR 63 1_555 R TL TL . B TL 208 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.171 ? metalc ? metalc25 B OG1 THR 45 B THR 63 1_555 R TL TL . B TL 208 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.969 ? metalc ? metalc26 B O VAL 46 B VAL 64 1_555 P TL TL . B TL 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc27 B O VAL 46 B VAL 64 1_555 P TL TL . B TL 206 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? metalc ? metalc28 B O VAL 46 B VAL 64 1_555 Q TL TL . B TL 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc29 B O VAL 46 B VAL 64 1_555 Q TL TL . B TL 207 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc30 B O GLY 47 B GLY 65 1_555 O TL TL . B TL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.315 ? metalc ? metalc31 B O GLY 47 B GLY 65 1_555 O TL TL . B TL 205 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.315 ? metalc ? metalc32 B O GLY 47 B GLY 65 1_555 P TL TL . B TL 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc33 B O GLY 47 B GLY 65 1_555 P TL TL . B TL 206 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc34 B O TYR 48 B TYR 66 1_555 O TL TL . B TL 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc35 B O TYR 48 B TYR 66 1_555 O TL TL . B TL 205 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 205 n n C1 H11 MPD sing 206 n n C1 H12 MPD sing 207 n n C1 H13 MPD sing 208 n n C2 O2 MPD sing 209 n n C2 CM MPD sing 210 n n C2 C3 MPD sing 211 n n O2 HO2 MPD sing 212 n n CM HM1 MPD sing 213 n n CM HM2 MPD sing 214 n n CM HM3 MPD sing 215 n n C3 C4 MPD sing 216 n n C3 H31 MPD sing 217 n n C3 H32 MPD sing 218 n n C4 O4 MPD sing 219 n n C4 C5 MPD sing 220 n n C4 H4 MPD sing 221 n n O4 HO4 MPD sing 222 n n C5 H51 MPD sing 223 n n C5 H52 MPD sing 224 n n C5 H53 MPD sing 225 n n # _atom_sites.entry_id 8CTV _atom_sites.fract_transf_matrix[1][1] 0.014467 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 201 1 MPD MPD . D 2 MPD A 1 202 2 MPD MPD . E 2 MPD A 1 203 201 MPD MPD . F 3 TL A 1 204 1 TL TL . G 3 TL A 1 205 2 TL TL . H 3 TL A 1 206 3 TL TL . I 3 TL A 1 207 4 TL TL . J 4 NA A 1 208 2 NA NA . K 2 MPD B 1 201 3 MPD MPD . L 2 MPD B 1 202 4 MPD MPD . M 2 MPD B 1 203 5 MPD MPD . N 2 MPD B 1 204 6 MPD MPD . O 3 TL B 1 205 5 TL TL . P 3 TL B 1 206 6 TL TL . Q 3 TL B 1 207 7 TL TL . R 3 TL B 1 208 8 TL TL . S 4 NA B 1 209 1 NA NA . T 5 HOH A 1 301 3 HOH HOH . T 5 HOH A 2 302 9 HOH HOH . T 5 HOH A 3 303 1 HOH HOH . T 5 HOH A 4 304 5 HOH HOH . T 5 HOH A 5 305 15 HOH HOH . T 5 HOH A 6 306 8 HOH HOH . T 5 HOH A 7 307 7 HOH HOH . T 5 HOH A 8 308 18 HOH HOH . T 5 HOH A 9 309 29 HOH HOH . T 5 HOH A 10 310 4 HOH HOH . T 5 HOH A 11 311 12 HOH HOH . T 5 HOH A 12 312 30 HOH HOH . T 5 HOH A 13 313 23 HOH HOH . T 5 HOH A 14 314 25 HOH HOH . T 5 HOH A 15 315 22 HOH HOH . T 5 HOH A 16 316 26 HOH HOH . T 5 HOH A 17 317 19 HOH HOH . T 5 HOH A 18 318 32 HOH HOH . T 5 HOH A 19 319 27 HOH HOH . T 5 HOH A 20 320 16 HOH HOH . T 5 HOH A 21 321 24 HOH HOH . T 5 HOH A 22 322 31 HOH HOH . T 5 HOH A 23 323 21 HOH HOH . U 5 HOH B 1 301 20 HOH HOH . U 5 HOH B 2 302 28 HOH HOH . U 5 HOH B 3 303 14 HOH HOH . U 5 HOH B 4 304 6 HOH HOH . U 5 HOH B 5 305 2 HOH HOH . U 5 HOH B 6 306 17 HOH HOH . U 5 HOH B 7 307 11 HOH HOH . U 5 HOH B 8 308 10 HOH HOH . U 5 HOH B 9 309 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 2 5.891 -19.476 23.888 1 71.66 ? C1 MPD 203 A 1 HETATM 2 C C2 MPD . . . E 2 4.554 -19.003 24.449 1 71.26 ? C2 MPD 203 A 1 HETATM 3 O O2 MPD . . . E 2 3.954 -20.114 25.164 1 70.13 ? O2 MPD 203 A 1 HETATM 4 C CM MPD . . . E 2 3.631 -18.633 23.294 1 71.2 ? CM MPD 203 A 1 HETATM 5 C C3 MPD . . . E 2 4.744 -17.783 25.359 1 71.05 ? C3 MPD 203 A 1 HETATM 6 C C4 MPD . . . E 2 4.876 -18.167 26.828 1 70.77 ? C4 MPD 203 A 1 HETATM 7 O O4 MPD . . . E 2 3.764 -18.954 27.183 1 71.35 ? O4 MPD 203 A 1 HETATM 8 C C5 MPD . . . E 2 6.172 -18.932 27.047 1 70.62 ? C5 MPD 203 A 1 HETATM 9 H H11 MPD . . . E 2 6.703 -18.867 24.279 1 85.86 ? H11 MPD 203 A 1 HETATM 10 H H12 MPD . . . E 2 5.893 -19.402 22.801 1 85.86 ? H12 MPD 203 A 1 HETATM 11 H H13 MPD . . . E 2 6.052 -20.515 24.176 1 85.86 ? H13 MPD 203 A 1 HETATM 12 H HO2 MPD . . . E 2 3.339 -19.78 25.849 1 84.02 ? HO2 MPD 203 A 1 HETATM 13 H HM1 MPD . . . E 2 3.746 -17.575 23.058 1 85.31 ? HM1 MPD 203 A 1 HETATM 14 H HM2 MPD . . . E 2 2.599 -18.817 23.594 1 85.31 ? HM2 MPD 203 A 1 HETATM 15 H HM3 MPD . . . E 2 3.855 -19.235 22.414 1 85.31 ? HM3 MPD 203 A 1 HETATM 16 H H31 MPD . . . E 2 3.882 -17.124 25.249 1 85.13 ? H31 MPD 203 A 1 HETATM 17 H H32 MPD . . . E 2 5.623 -17.218 25.05 1 85.13 ? H32 MPD 203 A 1 HETATM 18 H H4 MPD . . . E 2 4.897 -17.258 27.429 1 84.79 ? H4 MPD 203 A 1 HETATM 19 H HO4 MPD . . . E 2 4.068 -19.76 27.65 1 85.49 ? HO4 MPD 203 A 1 HETATM 20 H H51 MPD . . . E 2 6.002 -19.997 26.889 1 84.61 ? H51 MPD 203 A 1 HETATM 21 H H52 MPD . . . E 2 6.508 -18.775 28.072 1 84.61 ? H52 MPD 203 A 1 HETATM 22 H H53 MPD . . . E 2 6.939 -18.571 26.364 1 84.61 ? H53 MPD 203 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #