data_8CTZ
#
_model_server_result.job_id            OCN4c1VA_WFo6l-1xtgcyg 
_model_server_result.datetime_utc      '2025-01-11 00:45:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ctz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":203}' 
#
_entry.id    8CTZ 
#
_exptl.entry_id    8CTZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.97 
_cell.angle_gamma         90 
_cell.entry_id            8CTZ 
_cell.length_a            59.506 
_cell.length_b            66.492 
_cell.length_c            69.182 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CTZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,L,M,N,O,P,T 1 1 
B,D,E,I,J,K,Q,S,U,V 1 2 
A,F,G,H,R 1 3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_545 x,y-1,z 1 0 0 0 1 0 0 0 1 0 -66.492 0 
3 'crystal symmetry operation' 2_545 -x,y-1/2,-z -1 0 0 0 1 0 0 0 -1 0 -33.246 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 K N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D O3' DC 3 D DC 3 1_555 D P 6OG 4 D 6OG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? 
covale ? covale2 D O3' 6OG 4 D 6OG 4 1_555 D P DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? 
covale ? covale3 D O3' DT 8 D DT 8 1_555 D P OWR 9 D OWR 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? 
covale ? covale4 D O3' OWR 9 D OWR 9 1_555 D P DG 10 D DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? 
covale ? covale5 E O3' DC 3 E DC 3 1_555 E P 6OG 4 E 6OG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? 
covale ? covale6 E O3' 6OG 4 E 6OG 4 1_555 E P DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? 
covale ? covale7 E O3' DT 8 E DT 8 1_555 E P OWR 9 E OWR 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? 
covale ? covale8 E O3' OWR 9 E OWR 9 1_555 E P DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.602 ? 
metalc ? metalc1 S O HOH . B HOH 305 1_555 Q K K . D K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.289 ? 
metalc ? metalc2 C OD1 ASP 17 C ASP 71 1_555 O NA NA . C NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc3 C OE2 GLU 134 C GLU 188 1_555 O NA NA . C NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc4 D O2 DC 11 D DC 11 1_555 Q K K . D K 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.437 ? 
hydrog WATSON-CRICK hydrog1 D N3 DC 1 D DC 1 1_555 E N1 DG 12 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 D N4 DC 1 D DC 1 1_555 E O6 DG 12 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 D O2 DC 1 D DC 1 1_555 E N2 DG 12 E DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 D N1 DG 2 D DG 2 1_555 E N3 DC 11 E DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 D N2 DG 2 D DG 2 1_555 E O2 DC 11 E DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 D O6 DG 2 D DG 2 1_555 E N4 DC 11 E DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 D N3 DC 3 D DC 3 1_555 E N1 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 D N4 DC 3 D DC 3 1_555 E O6 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 D O2 DC 3 D DC 3 1_555 E N2 DG 10 E DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 D N1 DA 5 D DA 5 1_555 E N3 DT 8 E DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 D N6 DA 5 D DA 5 1_555 E O4 DT 8 E DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 D N1 DA 6 D DA 6 1_555 E N3 DT 7 E DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 D N6 DA 6 D DA 6 1_555 E O4 DT 7 E DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 D N3 DT 7 D DT 7 1_555 E N1 DA 6 E DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 D O4 DT 7 D DT 7 1_555 E N6 DA 6 E DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 D N3 DT 8 D DT 8 1_555 E N1 DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 D O4 DT 8 D DT 8 1_555 E N6 DA 5 E DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 D N1 DG 10 D DG 10 1_555 E N3 DC 3 E DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 D N2 DG 10 D DG 10 1_555 E O2 DC 3 E DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 D O6 DG 10 D DG 10 1_555 E N4 DC 3 E DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 D N3 DC 11 D DC 11 1_555 E N1 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 D N4 DC 11 D DC 11 1_555 E O6 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 D O2 DC 11 D DC 11 1_555 E N2 DG 2 E DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 D N1 DG 12 D DG 12 1_555 E N3 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog25 D N2 DG 12 D DG 12 1_555 E O2 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog26 D O6 DG 12 D DG 12 1_555 E N4 DC 1 E DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 267 n n 
C1 C2 EDO sing 268 n n 
C1 H11 EDO sing 269 n n 
C1 H12 EDO sing 270 n n 
O1 HO1 EDO sing 271 n n 
C2 O2 EDO sing 272 n n 
C2 H21 EDO sing 273 n n 
C2 H22 EDO sing 274 n n 
O2 HO2 EDO sing 275 n n 
#
_atom_sites.entry_id                     8CTZ 
_atom_sites.fract_transf_matrix[1][1]    0.016805 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005451 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015039 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015196 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 3 GOL A 1 201 1 GOL GOL . 
G 3 GOL A 1 202 3 GOL GOL . 
H 4 EDO A 1 203 9 EDO EDO . 
I 3 GOL B 1 201 4 GOL GOL . 
J 5 ACT B 1 202 6 ACT ACT . 
K 4 EDO B 1 203 8 EDO EDO . 
L 3 GOL C 1 201 2 GOL GOL . 
M 5 ACT C 1 202 5 ACT ACT . 
N 4 EDO C 1 203 7 EDO EDO . 
O 6 NA C 1 204 10 NA NA . 
P 7 K C 1 205 12 K K . 
Q 7 K D 1 101 11 K K . 
R 8 HOH A 1 301 120 HOH HOH . 
R 8 HOH A 2 302 13 HOH HOH . 
R 8 HOH A 3 303 21 HOH HOH . 
R 8 HOH A 4 304 50 HOH HOH . 
R 8 HOH A 5 305 129 HOH HOH . 
R 8 HOH A 6 306 34 HOH HOH . 
R 8 HOH A 7 307 14 HOH HOH . 
R 8 HOH A 8 308 32 HOH HOH . 
R 8 HOH A 9 309 18 HOH HOH . 
R 8 HOH A 10 310 78 HOH HOH . 
R 8 HOH A 11 311 40 HOH HOH . 
R 8 HOH A 12 312 33 HOH HOH . 
R 8 HOH A 13 313 108 HOH HOH . 
R 8 HOH A 14 314 121 HOH HOH . 
R 8 HOH A 15 315 24 HOH HOH . 
R 8 HOH A 16 316 19 HOH HOH . 
R 8 HOH A 17 317 25 HOH HOH . 
R 8 HOH A 18 318 105 HOH HOH . 
R 8 HOH A 19 319 43 HOH HOH . 
R 8 HOH A 20 320 98 HOH HOH . 
R 8 HOH A 21 321 122 HOH HOH . 
R 8 HOH A 22 322 106 HOH HOH . 
R 8 HOH A 23 323 59 HOH HOH . 
R 8 HOH A 24 324 115 HOH HOH . 
R 8 HOH A 25 325 103 HOH HOH . 
R 8 HOH A 26 326 41 HOH HOH . 
R 8 HOH A 27 327 16 HOH HOH . 
R 8 HOH A 28 328 107 HOH HOH . 
R 8 HOH A 29 329 75 HOH HOH . 
R 8 HOH A 30 330 127 HOH HOH . 
R 8 HOH A 31 331 39 HOH HOH . 
R 8 HOH A 32 332 74 HOH HOH . 
R 8 HOH A 33 333 97 HOH HOH . 
R 8 HOH A 34 334 15 HOH HOH . 
R 8 HOH A 35 335 60 HOH HOH . 
R 8 HOH A 36 336 58 HOH HOH . 
R 8 HOH A 37 337 72 HOH HOH . 
R 8 HOH A 38 338 82 HOH HOH . 
R 8 HOH A 39 339 70 HOH HOH . 
R 8 HOH A 40 340 73 HOH HOH . 
R 8 HOH A 41 341 26 HOH HOH . 
R 8 HOH A 42 342 71 HOH HOH . 
S 8 HOH B 1 301 110 HOH HOH . 
S 8 HOH B 2 302 86 HOH HOH . 
S 8 HOH B 3 303 27 HOH HOH . 
S 8 HOH B 4 304 63 HOH HOH . 
S 8 HOH B 5 305 123 HOH HOH . 
S 8 HOH B 6 306 95 HOH HOH . 
S 8 HOH B 7 307 85 HOH HOH . 
S 8 HOH B 8 308 36 HOH HOH . 
S 8 HOH B 9 309 93 HOH HOH . 
S 8 HOH B 10 310 37 HOH HOH . 
S 8 HOH B 11 311 54 HOH HOH . 
S 8 HOH B 12 312 23 HOH HOH . 
S 8 HOH B 13 313 17 HOH HOH . 
S 8 HOH B 14 314 80 HOH HOH . 
S 8 HOH B 15 315 57 HOH HOH . 
S 8 HOH B 16 316 35 HOH HOH . 
S 8 HOH B 17 317 79 HOH HOH . 
S 8 HOH B 18 318 28 HOH HOH . 
S 8 HOH B 19 319 87 HOH HOH . 
S 8 HOH B 20 320 90 HOH HOH . 
S 8 HOH B 21 321 76 HOH HOH . 
S 8 HOH B 22 322 84 HOH HOH . 
S 8 HOH B 23 323 83 HOH HOH . 
S 8 HOH B 24 324 49 HOH HOH . 
S 8 HOH B 25 325 22 HOH HOH . 
S 8 HOH B 26 326 31 HOH HOH . 
S 8 HOH B 27 327 62 HOH HOH . 
S 8 HOH B 28 328 51 HOH HOH . 
S 8 HOH B 29 329 52 HOH HOH . 
T 8 HOH C 1 301 89 HOH HOH . 
T 8 HOH C 2 302 130 HOH HOH . 
T 8 HOH C 3 303 100 HOH HOH . 
T 8 HOH C 4 304 119 HOH HOH . 
T 8 HOH C 5 305 109 HOH HOH . 
T 8 HOH C 6 306 68 HOH HOH . 
T 8 HOH C 7 307 46 HOH HOH . 
T 8 HOH C 8 308 113 HOH HOH . 
T 8 HOH C 9 309 30 HOH HOH . 
T 8 HOH C 10 310 81 HOH HOH . 
T 8 HOH C 11 311 88 HOH HOH . 
T 8 HOH C 12 312 66 HOH HOH . 
T 8 HOH C 13 313 114 HOH HOH . 
T 8 HOH C 14 314 38 HOH HOH . 
T 8 HOH C 15 315 65 HOH HOH . 
T 8 HOH C 16 316 111 HOH HOH . 
T 8 HOH C 17 317 131 HOH HOH . 
T 8 HOH C 18 318 64 HOH HOH . 
T 8 HOH C 19 319 99 HOH HOH . 
T 8 HOH C 20 320 126 HOH HOH . 
T 8 HOH C 21 321 124 HOH HOH . 
T 8 HOH C 22 322 67 HOH HOH . 
T 8 HOH C 23 323 96 HOH HOH . 
T 8 HOH C 24 324 42 HOH HOH . 
T 8 HOH C 25 325 61 HOH HOH . 
T 8 HOH C 26 326 102 HOH HOH . 
T 8 HOH C 27 327 55 HOH HOH . 
T 8 HOH C 28 328 29 HOH HOH . 
T 8 HOH C 29 329 128 HOH HOH . 
T 8 HOH C 30 330 112 HOH HOH . 
T 8 HOH C 31 331 91 HOH HOH . 
T 8 HOH C 32 332 125 HOH HOH . 
T 8 HOH C 33 333 118 HOH HOH . 
U 8 HOH D 1 201 77 HOH HOH . 
U 8 HOH D 2 202 69 HOH HOH . 
U 8 HOH D 3 203 20 HOH HOH . 
U 8 HOH D 4 204 45 HOH HOH . 
U 8 HOH D 5 205 94 HOH HOH . 
U 8 HOH D 6 206 101 HOH HOH . 
U 8 HOH D 7 207 104 HOH HOH . 
U 8 HOH D 8 208 117 HOH HOH . 
U 8 HOH D 9 209 44 HOH HOH . 
V 8 HOH E 1 101 92 HOH HOH . 
V 8 HOH E 2 102 116 HOH HOH . 
V 8 HOH E 3 103 47 HOH HOH . 
V 8 HOH E 4 104 48 HOH HOH . 
V 8 HOH E 5 105 53 HOH HOH . 
V 8 HOH E 6 106 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . N 4 14.063 -6.761 12.122 1 39.45 ? C1 EDO 203 C 1 
HETATM 2 O O1 EDO . . . N 4 13.711 -7.44 10.906 1 39.37 ? O1 EDO 203 C 1 
HETATM 3 C C2 EDO . . . N 4 15.504 -6.257 12.077 1 40.03 ? C2 EDO 203 C 1 
HETATM 4 O O2 EDO . . . N 4 15.523 -4.986 11.403 1 56.12 ? O2 EDO 203 C 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           4 
#