data_8CV5
#
_model_server_result.job_id            2O1q0tarXEsYa-e-3sDBiw 
_model_server_result.datetime_utc      '2024-11-23 03:55:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cv5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":102}' 
#
_entry.id    8CV5 
#
_exptl.entry_id    8CV5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              16.023 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'AMINO GROUP' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8CV5 
_cell.length_a            76.066 
_cell.length_b            76.066 
_cell.length_c            57.907 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CV5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    'P 32 2"' 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B N TRP 1 B TRP 1 1_555 C C ACE . B ACE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C ARG 8 B ARG 8 1_555 B N ALY 9 B ALY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale3 B C ALY 9 B ALY 9 1_555 B N TYR 10 B TYR 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 B C GLY 11 B GLY 11 1_555 B N ALY 12 B ALY 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 B C ALY 12 B ALY 12 1_555 B N ALY 13 B ALY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 B C ALY 13 B ALY 13 1_555 B N LYS 14 B LYS 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale7 B SG CYS 17 B CYS 17 1_555 C CH3 ACE . B ACE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? 
covale ? covale8 B C CYS 17 B CYS 17 1_555 D N NH2 . B NH2 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? 
#
_chem_comp.formula           'H2 N' 
_chem_comp.formula_weight    16.023 
_chem_comp.id                NH2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'AMINO GROUP' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N HN1 NH2 sing 271 n n 
N HN2 NH2 sing 272 n n 
#
_atom_sites.entry_id                     8CV5 
_atom_sites.fract_transf_matrix[1][1]    0.013146 
_atom_sites.fract_transf_matrix[1][2]    0.00759 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017269 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ACE B 1 101 0 ACE ACE . 
D 4 NH2 B 1 102 18 NH2 NH2 . 
E 5 HOH A 1 501 42 HOH HOH . 
E 5 HOH A 2 502 169 HOH HOH . 
E 5 HOH A 3 503 150 HOH HOH . 
E 5 HOH A 4 504 154 HOH HOH . 
E 5 HOH A 5 505 31 HOH HOH . 
E 5 HOH A 6 506 3 HOH HOH . 
E 5 HOH A 7 507 142 HOH HOH . 
E 5 HOH A 8 508 38 HOH HOH . 
E 5 HOH A 9 509 2 HOH HOH . 
E 5 HOH A 10 510 21 HOH HOH . 
E 5 HOH A 11 511 86 HOH HOH . 
E 5 HOH A 12 512 33 HOH HOH . 
E 5 HOH A 13 513 184 HOH HOH . 
E 5 HOH A 14 514 4 HOH HOH . 
E 5 HOH A 15 515 51 HOH HOH . 
E 5 HOH A 16 516 121 HOH HOH . 
E 5 HOH A 17 517 133 HOH HOH . 
E 5 HOH A 18 518 106 HOH HOH . 
E 5 HOH A 19 519 8 HOH HOH . 
E 5 HOH A 20 520 17 HOH HOH . 
E 5 HOH A 21 521 59 HOH HOH . 
E 5 HOH A 22 522 16 HOH HOH . 
E 5 HOH A 23 523 94 HOH HOH . 
E 5 HOH A 24 524 14 HOH HOH . 
E 5 HOH A 25 525 60 HOH HOH . 
E 5 HOH A 26 526 44 HOH HOH . 
E 5 HOH A 27 527 52 HOH HOH . 
E 5 HOH A 28 528 91 HOH HOH . 
E 5 HOH A 29 529 92 HOH HOH . 
E 5 HOH A 30 530 155 HOH HOH . 
E 5 HOH A 31 531 83 HOH HOH . 
E 5 HOH A 32 532 49 HOH HOH . 
E 5 HOH A 33 533 12 HOH HOH . 
E 5 HOH A 34 534 128 HOH HOH . 
E 5 HOH A 35 535 39 HOH HOH . 
E 5 HOH A 36 536 25 HOH HOH . 
E 5 HOH A 37 537 37 HOH HOH . 
E 5 HOH A 38 538 55 HOH HOH . 
E 5 HOH A 39 539 58 HOH HOH . 
E 5 HOH A 40 540 18 HOH HOH . 
E 5 HOH A 41 541 15 HOH HOH . 
E 5 HOH A 42 542 11 HOH HOH . 
E 5 HOH A 43 543 109 HOH HOH . 
E 5 HOH A 44 544 10 HOH HOH . 
E 5 HOH A 45 545 70 HOH HOH . 
E 5 HOH A 46 546 85 HOH HOH . 
E 5 HOH A 47 547 23 HOH HOH . 
E 5 HOH A 48 548 26 HOH HOH . 
E 5 HOH A 49 549 24 HOH HOH . 
E 5 HOH A 50 550 57 HOH HOH . 
E 5 HOH A 51 551 132 HOH HOH . 
E 5 HOH A 52 552 167 HOH HOH . 
E 5 HOH A 53 553 75 HOH HOH . 
E 5 HOH A 54 554 40 HOH HOH . 
E 5 HOH A 55 555 107 HOH HOH . 
E 5 HOH A 56 556 27 HOH HOH . 
E 5 HOH A 57 557 153 HOH HOH . 
E 5 HOH A 58 558 9 HOH HOH . 
E 5 HOH A 59 559 45 HOH HOH . 
E 5 HOH A 60 560 162 HOH HOH . 
E 5 HOH A 61 561 1 HOH HOH . 
E 5 HOH A 62 562 32 HOH HOH . 
E 5 HOH A 63 563 64 HOH HOH . 
E 5 HOH A 64 564 28 HOH HOH . 
E 5 HOH A 65 565 20 HOH HOH . 
E 5 HOH A 66 566 6 HOH HOH . 
E 5 HOH A 67 567 69 HOH HOH . 
E 5 HOH A 68 568 63 HOH HOH . 
E 5 HOH A 69 569 137 HOH HOH . 
E 5 HOH A 70 570 5 HOH HOH . 
E 5 HOH A 71 571 80 HOH HOH . 
E 5 HOH A 72 572 146 HOH HOH . 
E 5 HOH A 73 573 118 HOH HOH . 
E 5 HOH A 74 574 84 HOH HOH . 
E 5 HOH A 75 575 158 HOH HOH . 
E 5 HOH A 76 576 74 HOH HOH . 
E 5 HOH A 77 577 172 HOH HOH . 
E 5 HOH A 78 578 29 HOH HOH . 
E 5 HOH A 79 579 36 HOH HOH . 
E 5 HOH A 80 580 30 HOH HOH . 
E 5 HOH A 81 581 100 HOH HOH . 
E 5 HOH A 82 582 82 HOH HOH . 
E 5 HOH A 83 583 19 HOH HOH . 
E 5 HOH A 84 584 124 HOH HOH . 
E 5 HOH A 85 585 101 HOH HOH . 
E 5 HOH A 86 586 77 HOH HOH . 
E 5 HOH A 87 587 151 HOH HOH . 
E 5 HOH A 88 588 95 HOH HOH . 
E 5 HOH A 89 589 119 HOH HOH . 
E 5 HOH A 90 590 116 HOH HOH . 
E 5 HOH A 91 591 117 HOH HOH . 
E 5 HOH A 92 592 34 HOH HOH . 
E 5 HOH A 93 593 156 HOH HOH . 
E 5 HOH A 94 594 163 HOH HOH . 
E 5 HOH A 95 595 22 HOH HOH . 
E 5 HOH A 96 596 147 HOH HOH . 
E 5 HOH A 97 597 7 HOH HOH . 
E 5 HOH A 98 598 144 HOH HOH . 
E 5 HOH A 99 599 102 HOH HOH . 
E 5 HOH A 100 600 47 HOH HOH . 
E 5 HOH A 101 601 90 HOH HOH . 
E 5 HOH A 102 602 65 HOH HOH . 
E 5 HOH A 103 603 105 HOH HOH . 
E 5 HOH A 104 604 115 HOH HOH . 
E 5 HOH A 105 605 149 HOH HOH . 
E 5 HOH A 106 606 141 HOH HOH . 
E 5 HOH A 107 607 73 HOH HOH . 
E 5 HOH A 108 608 112 HOH HOH . 
E 5 HOH A 109 609 41 HOH HOH . 
E 5 HOH A 110 610 66 HOH HOH . 
E 5 HOH A 111 611 43 HOH HOH . 
E 5 HOH A 112 612 139 HOH HOH . 
E 5 HOH A 113 613 50 HOH HOH . 
E 5 HOH A 114 614 131 HOH HOH . 
E 5 HOH A 115 615 127 HOH HOH . 
E 5 HOH A 116 616 46 HOH HOH . 
E 5 HOH A 117 617 159 HOH HOH . 
E 5 HOH A 118 618 145 HOH HOH . 
E 5 HOH A 119 619 97 HOH HOH . 
E 5 HOH A 120 620 103 HOH HOH . 
E 5 HOH A 121 621 136 HOH HOH . 
E 5 HOH A 122 622 177 HOH HOH . 
E 5 HOH A 123 623 114 HOH HOH . 
E 5 HOH A 124 624 71 HOH HOH . 
E 5 HOH A 125 625 88 HOH HOH . 
E 5 HOH A 126 626 140 HOH HOH . 
E 5 HOH A 127 627 56 HOH HOH . 
E 5 HOH A 128 628 53 HOH HOH . 
E 5 HOH A 129 629 72 HOH HOH . 
E 5 HOH A 130 630 78 HOH HOH . 
E 5 HOH A 131 631 152 HOH HOH . 
E 5 HOH A 132 632 135 HOH HOH . 
E 5 HOH A 133 633 96 HOH HOH . 
F 5 HOH B 1 201 161 HOH HOH . 
F 5 HOH B 2 202 62 HOH HOH . 
F 5 HOH B 3 203 35 HOH HOH . 
F 5 HOH B 4 204 61 HOH HOH . 
F 5 HOH B 5 205 148 HOH HOH . 
F 5 HOH B 6 206 68 HOH HOH . 
F 5 HOH B 7 207 79 HOH HOH . 
F 5 HOH B 8 208 13 HOH HOH . 
F 5 HOH B 9 209 120 HOH HOH . 
F 5 HOH B 10 210 93 HOH HOH . 
F 5 HOH B 11 211 48 HOH HOH . 
F 5 HOH B 12 212 99 HOH HOH . 
F 5 HOH B 13 213 76 HOH HOH . 
F 5 HOH B 14 214 67 HOH HOH . 
F 5 HOH B 15 215 174 HOH HOH . 
F 5 HOH B 16 216 54 HOH HOH . 
F 5 HOH B 17 217 98 HOH HOH . 
F 5 HOH B 18 218 187 HOH HOH . 
F 5 HOH B 19 219 129 HOH HOH . 
F 5 HOH B 20 220 170 HOH HOH . 
F 5 HOH B 21 221 122 HOH HOH . 
F 5 HOH B 22 222 113 HOH HOH . 
F 5 HOH B 23 223 111 HOH HOH . 
F 5 HOH B 24 224 186 HOH HOH . 
F 5 HOH B 25 225 134 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           N 
_atom_site.label_atom_id         N 
_atom_site.label_comp_id         NH2 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -38.206 
_atom_site.Cartn_y               36.042 
_atom_site.Cartn_z               2.117 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        22.17 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          N 
_atom_site.auth_comp_id          NH2 
_atom_site.auth_seq_id           102 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#