data_8CVR
#
_model_server_result.job_id            y1Mkbp_hAvi72tJv-uB-Iw 
_model_server_result.datetime_utc      '2024-11-12 20:38:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cvr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":301}' 
#
_entry.id    8CVR 
#
_exptl.entry_id    8CVR 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              475.621 
_entity.id                          15 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-4-methyl-1-oxopentan-2-yl]-L-leucinamide 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    28-meric 
_pdbx_struct_assembly.oligomeric_count      28 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 15 CA N N 
? 15 DA N N 
? 15 EA N N 
? 15 FA N N 
? 15 GA N N 
? 15 HA N N 
#
_chem_comp.formula           'C26 H41 N3 O5' 
_chem_comp.formula_weight    475.621 
_chem_comp.id                LDZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-4-methyl-1-oxopentan-2-yl]-L-leucinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C4 LDZ doub 171 n y 
C5 C6 LDZ sing 172 n y 
C4 C3 LDZ sing 173 n y 
C6 C1 LDZ doub 174 n y 
C3 C7 LDZ sing 175 n n 
C3 C2 LDZ doub 176 n y 
C7 O8 LDZ sing 177 n n 
C1 C2 LDZ sing 178 n y 
O8 C9 LDZ sing 179 n n 
O31 C9 LDZ doub 180 n n 
C9 N10 LDZ sing 181 n n 
N10 C11 LDZ sing 182 n n 
C33 C31 LDZ sing 183 n n 
C31 C30 LDZ sing 184 n n 
C31 C32 LDZ sing 185 n n 
C11 C30 LDZ sing 186 n n 
C11 C12 LDZ sing 187 n n 
C27 C25 LDZ sing 188 n n 
C26 C25 LDZ sing 189 n n 
O32 C12 LDZ doub 190 n n 
C25 C24 LDZ sing 191 n n 
C12 N13 LDZ sing 192 n n 
N13 C14 LDZ sing 193 n n 
C24 C14 LDZ sing 194 n n 
C14 C15 LDZ sing 195 n n 
C15 O34 LDZ doub 196 n n 
C15 N16 LDZ sing 197 n n 
N16 C17 LDZ sing 198 n n 
C17 C22 LDZ sing 199 n n 
C17 C18 LDZ sing 200 n n 
O33 C22 LDZ doub 201 n n 
C19 C21 LDZ sing 202 n n 
C19 C18 LDZ sing 203 n n 
C19 C20 LDZ sing 204 n n 
C1 H1 LDZ sing 205 n n 
C2 H2 LDZ sing 206 n n 
C4 H3 LDZ sing 207 n n 
C5 H4 LDZ sing 208 n n 
C6 H5 LDZ sing 209 n n 
C7 H6 LDZ sing 210 n n 
C7 H7 LDZ sing 211 n n 
N10 H8 LDZ sing 212 n n 
C11 H9 LDZ sing 213 n n 
N13 H10 LDZ sing 214 n n 
C14 H11 LDZ sing 215 n n 
N16 H12 LDZ sing 216 n n 
C17 H13 LDZ sing 217 n n 
C18 H14 LDZ sing 218 n n 
C18 H15 LDZ sing 219 n n 
C19 H16 LDZ sing 220 n n 
C20 H17 LDZ sing 221 n n 
C20 H18 LDZ sing 222 n n 
C20 H19 LDZ sing 223 n n 
C21 H20 LDZ sing 224 n n 
C21 H21 LDZ sing 225 n n 
C21 H22 LDZ sing 226 n n 
C22 H23 LDZ sing 227 n n 
C24 H25 LDZ sing 228 n n 
C24 H26 LDZ sing 229 n n 
C25 H27 LDZ sing 230 n n 
C26 H28 LDZ sing 231 n n 
C26 H29 LDZ sing 232 n n 
C26 H30 LDZ sing 233 n n 
C27 H31 LDZ sing 234 n n 
C27 H32 LDZ sing 235 n n 
C27 H33 LDZ sing 236 n n 
C30 H34 LDZ sing 237 n n 
C30 H35 LDZ sing 238 n n 
C31 H36 LDZ sing 239 n n 
C32 H37 LDZ sing 240 n n 
C32 H38 LDZ sing 241 n n 
C32 H39 LDZ sing 242 n n 
C33 H40 LDZ sing 243 n n 
C33 H41 LDZ sing 244 n n 
C33 H42 LDZ sing 245 n n 
#
_atom_sites.entry_id                     8CVR 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
CA 15 LDZ H 1 301 1 LDZ MGG . 
DA 15 LDZ I 1 301 1 LDZ MGG . 
EA 15 LDZ L 1 301 1 LDZ MGG . 
FA 15 LDZ V 1 301 1 LDZ MGG . 
GA 15 LDZ W 1 301 1 LDZ MGG . 
HA 15 LDZ Z 1 301 1 LDZ MGG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 LDZ . . . DA 15 165.439 190.923 155.459 1 0.5 ? C4 LDZ 301 I 1 
HETATM 2 C C5 LDZ . . . DA 15 165.226 189.682 154.881 1 0.5 ? C5 LDZ 301 I 1 
HETATM 3 C C6 LDZ . . . DA 15 163.934 189.245 154.646 1 0.5 ? C6 LDZ 301 I 1 
HETATM 4 C C1 LDZ . . . DA 15 162.857 190.045 154.986 1 0.5 ? C1 LDZ 301 I 1 
HETATM 5 C C2 LDZ . . . DA 15 163.071 191.285 155.562 1 0.5 ? C2 LDZ 301 I 1 
HETATM 6 C C3 LDZ . . . DA 15 164.361 191.724 155.798 1 0.5 ? C3 LDZ 301 I 1 
HETATM 7 C C7 LDZ . . . DA 15 164.593 193.092 156.432 1 0.5 ? C7 LDZ 301 I 1 
HETATM 8 O O8 LDZ . . . DA 15 163.983 194.051 155.618 1 0.5 ? O8 LDZ 301 I 1 
HETATM 9 C C9 LDZ . . . DA 15 163.767 195.283 156.241 1 0.5 ? C9 LDZ 301 I 1 
HETATM 10 O O31 LDZ . . . DA 15 164.384 195.575 157.205 1 0.5 ? O31 LDZ 301 I 1 
HETATM 11 N N10 LDZ . . . DA 15 162.786 196.208 155.706 1 0.5 ? N10 LDZ 301 I 1 
HETATM 12 C C11 LDZ . . . DA 15 162.926 197.619 156.005 1 0.5 ? C11 LDZ 301 I 1 
HETATM 13 C C12 LDZ . . . DA 15 162.321 197.992 157.353 1 0.5 ? C12 LDZ 301 I 1 
HETATM 14 O O32 LDZ . . . DA 15 162.98 198.618 158.109 1 0.5 ? O32 LDZ 301 I 1 
HETATM 15 C C30 LDZ . . . DA 15 162.358 198.505 154.906 1 0.5 ? C30 LDZ 301 I 1 
HETATM 16 C C31 LDZ . . . DA 15 162.79 199.951 155.123 1 0.5 ? C31 LDZ 301 I 1 
HETATM 17 C C32 LDZ . . . DA 15 162.232 200.871 154.04 1 0.5 ? C32 LDZ 301 I 1 
HETATM 18 C C33 LDZ . . . DA 15 164.309 200.053 155.219 1 0.5 ? C33 LDZ 301 I 1 
HETATM 19 N N13 LDZ . . . DA 15 160.97 197.613 157.735 1 0.5 ? N13 LDZ 301 I 1 
HETATM 20 C C14 LDZ . . . DA 15 160.094 196.853 156.867 1 0.5 ? C14 LDZ 301 I 1 
HETATM 21 C C15 LDZ . . . DA 15 158.741 197.551 156.769 1 0.5 ? C15 LDZ 301 I 1 
HETATM 22 O O34 LDZ . . . DA 15 158.474 198.436 157.505 1 0.5 ? O34 LDZ 301 I 1 
HETATM 23 C C24 LDZ . . . DA 15 159.877 195.469 157.465 1 0.5 ? C24 LDZ 301 I 1 
HETATM 24 C C25 LDZ . . . DA 15 158.667 195.428 158.397 1 0.5 ? C25 LDZ 301 I 1 
HETATM 25 C C26 LDZ . . . DA 15 158.269 193.991 158.719 1 0.5 ? C26 LDZ 301 I 1 
HETATM 26 C C27 LDZ . . . DA 15 158.93 196.204 159.684 1 0.5 ? C27 LDZ 301 I 1 
HETATM 27 N N16 LDZ . . . DA 15 157.778 197.127 155.773 1 0.5 ? N16 LDZ 301 I 1 
HETATM 28 C C17 LDZ . . . DA 15 156.49 197.785 155.69 1 0.5 ? C17 LDZ 301 I 1 
HETATM 29 C C22 LDZ . . . DA 15 155.572 197.104 156.692 1 0.5 ? C22 LDZ 301 I 1 
HETATM 30 C C18 LDZ . . . DA 15 155.892 197.605 154.299 1 0.5 ? C18 LDZ 301 I 1 
HETATM 31 C C19 LDZ . . . DA 15 155.792 198.942 153.586 1 0.5 ? C19 LDZ 301 I 1 
HETATM 32 C C20 LDZ . . . DA 15 157.087 199.724 153.774 1 0.5 ? C20 LDZ 301 I 1 
HETATM 33 C C21 LDZ . . . DA 15 155.448 198.758 152.11 1 0.5 ? C21 LDZ 301 I 1 
HETATM 34 O O33 LDZ . . . DA 15 155.879 197.082 157.834 1 0.5 ? O33 LDZ 301 I 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    66 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#