data_8CVS
#
_model_server_result.job_id            LyAfYJ4fv2ko_lF4CC5qEg 
_model_server_result.datetime_utc      '2024-11-05 00:39:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cvs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"IA","auth_seq_id":301}' 
#
_entry.id    8CVS 
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_exptl.entry_id    8CVS 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              475.621 
_entity.id                          16 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-4-methyl-1-oxopentan-2-yl]-L-leucinamide 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    29-meric 
_pdbx_struct_assembly.oligomeric_count      29 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 16 DA N N 
? 16 EA N N 
? 16 FA N N 
? 16 GA N N 
? 16 HA N N 
? 16 IA N N 
#
_chem_comp.formula           'C26 H41 N3 O5' 
_chem_comp.formula_weight    475.621 
_chem_comp.id                LDZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2S)-4-methyl-1-oxopentan-2-yl]-L-leucinamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C5 C4 LDZ doub 225 n y 
C5 C6 LDZ sing 226 n y 
C4 C3 LDZ sing 227 n y 
C6 C1 LDZ doub 228 n y 
C3 C7 LDZ sing 229 n n 
C3 C2 LDZ doub 230 n y 
C7 O8 LDZ sing 231 n n 
C1 C2 LDZ sing 232 n y 
O8 C9 LDZ sing 233 n n 
O31 C9 LDZ doub 234 n n 
C9 N10 LDZ sing 235 n n 
N10 C11 LDZ sing 236 n n 
C33 C31 LDZ sing 237 n n 
C31 C30 LDZ sing 238 n n 
C31 C32 LDZ sing 239 n n 
C11 C30 LDZ sing 240 n n 
C11 C12 LDZ sing 241 n n 
C27 C25 LDZ sing 242 n n 
C26 C25 LDZ sing 243 n n 
O32 C12 LDZ doub 244 n n 
C25 C24 LDZ sing 245 n n 
C12 N13 LDZ sing 246 n n 
N13 C14 LDZ sing 247 n n 
C24 C14 LDZ sing 248 n n 
C14 C15 LDZ sing 249 n n 
C15 O34 LDZ doub 250 n n 
C15 N16 LDZ sing 251 n n 
N16 C17 LDZ sing 252 n n 
C17 C22 LDZ sing 253 n n 
C17 C18 LDZ sing 254 n n 
O33 C22 LDZ doub 255 n n 
C19 C21 LDZ sing 256 n n 
C19 C18 LDZ sing 257 n n 
C19 C20 LDZ sing 258 n n 
C1 H1 LDZ sing 259 n n 
C2 H2 LDZ sing 260 n n 
C4 H3 LDZ sing 261 n n 
C5 H4 LDZ sing 262 n n 
C6 H5 LDZ sing 263 n n 
C7 H6 LDZ sing 264 n n 
C7 H7 LDZ sing 265 n n 
N10 H8 LDZ sing 266 n n 
C11 H9 LDZ sing 267 n n 
N13 H10 LDZ sing 268 n n 
C14 H11 LDZ sing 269 n n 
N16 H12 LDZ sing 270 n n 
C17 H13 LDZ sing 271 n n 
C18 H14 LDZ sing 272 n n 
C18 H15 LDZ sing 273 n n 
C19 H16 LDZ sing 274 n n 
C20 H17 LDZ sing 275 n n 
C20 H18 LDZ sing 276 n n 
C20 H19 LDZ sing 277 n n 
C21 H20 LDZ sing 278 n n 
C21 H21 LDZ sing 279 n n 
C21 H22 LDZ sing 280 n n 
C22 H23 LDZ sing 281 n n 
C24 H25 LDZ sing 282 n n 
C24 H26 LDZ sing 283 n n 
C25 H27 LDZ sing 284 n n 
C26 H28 LDZ sing 285 n n 
C26 H29 LDZ sing 286 n n 
C26 H30 LDZ sing 287 n n 
C27 H31 LDZ sing 288 n n 
C27 H32 LDZ sing 289 n n 
C27 H33 LDZ sing 290 n n 
C30 H34 LDZ sing 291 n n 
C30 H35 LDZ sing 292 n n 
C31 H36 LDZ sing 293 n n 
C32 H37 LDZ sing 294 n n 
C32 H38 LDZ sing 295 n n 
C32 H39 LDZ sing 296 n n 
C33 H40 LDZ sing 297 n n 
C33 H41 LDZ sing 298 n n 
C33 H42 LDZ sing 299 n n 
#
_atom_sites.entry_id                     8CVS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
DA 16 LDZ H 1 301 1 LDZ MGG . 
EA 16 LDZ K 1 301 1 LDZ MGG . 
FA 16 LDZ N 1 301 1 LDZ MGG . 
GA 16 LDZ V 1 301 1 LDZ MGG . 
HA 16 LDZ Y 1 301 1 LDZ MGG . 
IA 16 LDZ b 1 301 1 LDZ MGG . 
JA 17 IHP c 1 1901 1902 IHP IHP . 
KA 17 IHP c 1 1902 1903 IHP IHP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 LDZ . . . IA 16 177.615 134.208 188.641 1 0.5 ? C4 LDZ 301 b 1 
HETATM 2 C C5 LDZ . . . IA 16 177.34 135.574 188.519 1 0.5 ? C5 LDZ 301 b 1 
HETATM 3 C C6 LDZ . . . IA 16 176.545 136.211 189.474 1 0.5 ? C6 LDZ 301 b 1 
HETATM 4 C C1 LDZ . . . IA 16 176.028 135.49 190.549 1 0.5 ? C1 LDZ 301 b 1 
HETATM 5 C C2 LDZ . . . IA 16 176.3 134.128 190.673 1 0.5 ? C2 LDZ 301 b 1 
HETATM 6 C C3 LDZ . . . IA 16 177.099 133.49 189.719 1 0.5 ? C3 LDZ 301 b 1 
HETATM 7 C C7 LDZ . . . IA 16 177.396 131.982 189.859 1 0.5 ? C7 LDZ 301 b 1 
HETATM 8 O O8 LDZ . . . IA 16 176.16 131.337 190.047 1 0.5 ? O8 LDZ 301 b 1 
HETATM 9 C C9 LDZ . . . IA 16 176.171 129.938 189.796 1 0.5 ? C9 LDZ 301 b 1 
HETATM 10 O O31 LDZ . . . IA 16 177.169 129.341 189.796 1 0.5 ? O31 LDZ 301 b 1 
HETATM 11 N N10 LDZ . . . IA 16 174.873 129.253 189.527 1 0.5 ? N10 LDZ 301 b 1 
HETATM 12 C C11 LDZ . . . IA 16 173.682 130.061 189.449 1 0.5 ? C11 LDZ 301 b 1 
HETATM 13 C C12 LDZ . . . IA 16 172.501 129.142 189.306 1 0.5 ? C12 LDZ 301 b 1 
HETATM 14 O O32 LDZ . . . IA 16 171.645 129.144 190.115 1 0.5 ? O32 LDZ 301 b 1 
HETATM 15 C C30 LDZ . . . IA 16 173.744 130.931 188.157 1 0.5 ? C30 LDZ 301 b 1 
HETATM 16 C C31 LDZ . . . IA 16 173.705 132.488 188.467 1 0.5 ? C31 LDZ 301 b 1 
HETATM 17 C C32 LDZ . . . IA 16 173.667 133.305 187.16 1 0.5 ? C32 LDZ 301 b 1 
HETATM 18 C C33 LDZ . . . IA 16 172.501 132.857 189.404 1 0.5 ? C33 LDZ 301 b 1 
HETATM 19 N N13 LDZ . . . IA 16 172.432 128.247 188.14 1 0.5 ? N13 LDZ 301 b 1 
HETATM 20 C C14 LDZ . . . IA 16 171.298 127.374 187.998 1 0.5 ? C14 LDZ 301 b 1 
HETATM 21 C C15 LDZ . . . IA 16 171.699 125.943 188.353 1 0.5 ? C15 LDZ 301 b 1 
HETATM 22 O O34 LDZ . . . IA 16 171.932 125.171 187.491 1 0.5 ? O34 LDZ 301 b 1 
HETATM 23 C C24 LDZ . . . IA 16 170.799 127.442 186.551 1 0.5 ? C24 LDZ 301 b 1 
HETATM 24 C C25 LDZ . . . IA 16 169.461 128.256 186.479 1 0.5 ? C25 LDZ 301 b 1 
HETATM 25 C C26 LDZ . . . IA 16 168.953 128.395 184.999 1 0.5 ? C26 LDZ 301 b 1 
HETATM 26 C C27 LDZ . . . IA 16 169.605 129.636 187.178 1 0.5 ? C27 LDZ 301 b 1 
HETATM 27 N N16 LDZ . . . IA 16 171.784 125.538 189.811 1 0.5 ? N16 LDZ 301 b 1 
HETATM 28 C C17 LDZ . . . IA 16 172.158 124.183 190.174 1 0.5 ? C17 LDZ 301 b 1 
HETATM 29 C C22 LDZ . . . IA 16 171.185 123.223 189.527 1 0.5 ? C22 LDZ 301 b 1 
HETATM 30 C C18 LDZ . . . IA 16 172.038 124 191.68 1 0.5 ? C18 LDZ 301 b 1 
HETATM 31 C C19 LDZ . . . IA 16 170.729 123.23 192.045 1 0.5 ? C19 LDZ 301 b 1 
HETATM 32 C C20 LDZ . . . IA 16 169.559 124.2 192.386 1 0.5 ? C20 LDZ 301 b 1 
HETATM 33 C C21 LDZ . . . IA 16 170.969 122.209 193.159 1 0.5 ? C21 LDZ 301 b 1 
HETATM 34 O O33 LDZ . . . IA 16 170.138 123.622 189.119 1 0.5 ? O33 LDZ 301 b 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    94 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           34 
#