data_8CWK # _model_server_result.job_id 22pyXYvt-MthSO_OblYoug _model_server_result.datetime_utc '2024-11-21 08:58:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":300}' # _entry.id 8CWK # _exptl.entry_id 8CWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.63 _cell.angle_gamma 90 _cell.entry_id 8CWK _cell.length_a 133.155 _cell.length_b 99.343 _cell.length_c 124.957 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 A SG CYS 144 H CYS 144 1_555 A SG CYS 200 H CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf5 C SG CYS 22 A CYS 22 1_555 C SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 C SG CYS 148 A CYS 148 1_555 C SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 D SG CYS 23 B CYS 23 1_555 D SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf8 D SG CYS 134 B CYS 134 1_555 D SG CYS 194 B CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf9 E SG CYS 4 C CYS 336 1_555 E SG CYS 29 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 E SG CYS 47 C CYS 379 1_555 E SG CYS 100 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf11 E SG CYS 59 C CYS 391 1_555 E SG CYS 193 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 E SG CYS 148 C CYS 480 1_555 E SG CYS 156 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 B ND2 ASN 107 L ASN 107 1_555 G C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 E ND2 ASN 11 C ASN 343 1_555 L C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8CWK _atom_sites.fract_transf_matrix[1][1] 0.00751 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002532 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 GOL H 1 301 301 GOL GOL . G 7 NAG L 1 301 218 NAG NAG . H 6 GOL L 1 302 219 GOL GOL . I 6 GOL L 1 303 220 GOL GOL . J 6 GOL A 1 301 540 GOL GOL . K 6 GOL B 1 300 300 GOL GOL . L 7 NAG C 1 601 539 NAG NAG . M 6 GOL C 1 602 541 GOL GOL . N 8 HOH H 1 401 42 HOH HOH . N 8 HOH H 2 402 87 HOH HOH . N 8 HOH H 3 403 92 HOH HOH . N 8 HOH H 4 404 125 HOH HOH . N 8 HOH H 5 405 170 HOH HOH . N 8 HOH H 6 406 11 HOH HOH . N 8 HOH H 7 407 104 HOH HOH . N 8 HOH H 8 408 154 HOH HOH . N 8 HOH H 9 409 114 HOH HOH . N 8 HOH H 10 410 175 HOH HOH . N 8 HOH H 11 411 88 HOH HOH . N 8 HOH H 12 412 91 HOH HOH . N 8 HOH H 13 413 29 HOH HOH . N 8 HOH H 14 414 79 HOH HOH . N 8 HOH H 15 415 143 HOH HOH . N 8 HOH H 16 416 141 HOH HOH . O 8 HOH L 1 401 96 HOH HOH . O 8 HOH L 2 402 181 HOH HOH . O 8 HOH L 3 403 31 HOH HOH . O 8 HOH L 4 404 33 HOH HOH . O 8 HOH L 5 405 37 HOH HOH . O 8 HOH L 6 406 136 HOH HOH . O 8 HOH L 7 407 98 HOH HOH . O 8 HOH L 8 408 89 HOH HOH . O 8 HOH L 9 409 44 HOH HOH . O 8 HOH L 10 410 48 HOH HOH . O 8 HOH L 11 411 50 HOH HOH . O 8 HOH L 12 412 49 HOH HOH . O 8 HOH L 13 413 182 HOH HOH . O 8 HOH L 14 414 43 HOH HOH . O 8 HOH L 15 415 173 HOH HOH . O 8 HOH L 16 416 129 HOH HOH . O 8 HOH L 17 417 99 HOH HOH . O 8 HOH L 18 418 132 HOH HOH . O 8 HOH L 19 419 93 HOH HOH . O 8 HOH L 20 420 12 HOH HOH . O 8 HOH L 21 421 100 HOH HOH . O 8 HOH L 22 422 123 HOH HOH . O 8 HOH L 23 423 18 HOH HOH . O 8 HOH L 24 424 84 HOH HOH . O 8 HOH L 25 425 62 HOH HOH . O 8 HOH L 26 426 112 HOH HOH . O 8 HOH L 27 427 167 HOH HOH . O 8 HOH L 28 428 1 HOH HOH . O 8 HOH L 29 429 105 HOH HOH . O 8 HOH L 30 430 121 HOH HOH . O 8 HOH L 31 431 27 HOH HOH . O 8 HOH L 32 432 64 HOH HOH . P 8 HOH A 1 401 60 HOH HOH . P 8 HOH A 2 402 90 HOH HOH . P 8 HOH A 3 403 109 HOH HOH . P 8 HOH A 4 404 81 HOH HOH . P 8 HOH A 5 405 68 HOH HOH . P 8 HOH A 6 406 73 HOH HOH . P 8 HOH A 7 407 137 HOH HOH . P 8 HOH A 8 408 80 HOH HOH . P 8 HOH A 9 409 47 HOH HOH . P 8 HOH A 10 410 177 HOH HOH . P 8 HOH A 11 411 86 HOH HOH . P 8 HOH A 12 412 63 HOH HOH . P 8 HOH A 13 413 26 HOH HOH . P 8 HOH A 14 414 146 HOH HOH . P 8 HOH A 15 415 71 HOH HOH . P 8 HOH A 16 416 103 HOH HOH . P 8 HOH A 17 417 10 HOH HOH . P 8 HOH A 18 418 35 HOH HOH . P 8 HOH A 19 419 102 HOH HOH . P 8 HOH A 20 420 133 HOH HOH . P 8 HOH A 21 421 158 HOH HOH . P 8 HOH A 22 422 4 HOH HOH . P 8 HOH A 23 423 77 HOH HOH . P 8 HOH A 24 424 7 HOH HOH . P 8 HOH A 25 425 159 HOH HOH . P 8 HOH A 26 426 66 HOH HOH . P 8 HOH A 27 427 94 HOH HOH . P 8 HOH A 28 428 53 HOH HOH . P 8 HOH A 29 429 41 HOH HOH . P 8 HOH A 30 430 51 HOH HOH . P 8 HOH A 31 431 152 HOH HOH . P 8 HOH A 32 432 126 HOH HOH . P 8 HOH A 33 433 14 HOH HOH . P 8 HOH A 34 434 3 HOH HOH . P 8 HOH A 35 435 149 HOH HOH . P 8 HOH A 36 436 164 HOH HOH . P 8 HOH A 37 437 22 HOH HOH . P 8 HOH A 38 438 58 HOH HOH . P 8 HOH A 39 439 8 HOH HOH . P 8 HOH A 40 440 67 HOH HOH . P 8 HOH A 41 441 142 HOH HOH . P 8 HOH A 42 442 178 HOH HOH . P 8 HOH A 43 443 144 HOH HOH . P 8 HOH A 44 444 19 HOH HOH . P 8 HOH A 45 445 157 HOH HOH . P 8 HOH A 46 446 30 HOH HOH . P 8 HOH A 47 447 155 HOH HOH . P 8 HOH A 48 448 25 HOH HOH . P 8 HOH A 49 449 127 HOH HOH . P 8 HOH A 50 450 147 HOH HOH . P 8 HOH A 51 451 134 HOH HOH . P 8 HOH A 52 452 172 HOH HOH . P 8 HOH A 53 453 148 HOH HOH . P 8 HOH A 54 454 174 HOH HOH . Q 8 HOH B 1 401 162 HOH HOH . Q 8 HOH B 2 402 54 HOH HOH . Q 8 HOH B 3 403 139 HOH HOH . Q 8 HOH B 4 404 20 HOH HOH . Q 8 HOH B 5 405 2 HOH HOH . Q 8 HOH B 6 406 52 HOH HOH . Q 8 HOH B 7 407 24 HOH HOH . Q 8 HOH B 8 408 55 HOH HOH . Q 8 HOH B 9 409 45 HOH HOH . Q 8 HOH B 10 410 46 HOH HOH . Q 8 HOH B 11 411 5 HOH HOH . Q 8 HOH B 12 412 40 HOH HOH . Q 8 HOH B 13 413 13 HOH HOH . Q 8 HOH B 14 414 166 HOH HOH . Q 8 HOH B 15 415 122 HOH HOH . Q 8 HOH B 16 416 82 HOH HOH . Q 8 HOH B 17 417 124 HOH HOH . Q 8 HOH B 18 418 110 HOH HOH . Q 8 HOH B 19 419 163 HOH HOH . Q 8 HOH B 20 420 113 HOH HOH . Q 8 HOH B 21 421 65 HOH HOH . Q 8 HOH B 22 422 85 HOH HOH . Q 8 HOH B 23 423 76 HOH HOH . Q 8 HOH B 24 424 116 HOH HOH . Q 8 HOH B 25 425 120 HOH HOH . Q 8 HOH B 26 426 70 HOH HOH . Q 8 HOH B 27 427 21 HOH HOH . Q 8 HOH B 28 428 28 HOH HOH . Q 8 HOH B 29 429 78 HOH HOH . Q 8 HOH B 30 430 9 HOH HOH . Q 8 HOH B 31 431 176 HOH HOH . Q 8 HOH B 32 432 168 HOH HOH . Q 8 HOH B 33 433 117 HOH HOH . Q 8 HOH B 34 434 107 HOH HOH . Q 8 HOH B 35 435 179 HOH HOH . Q 8 HOH B 36 436 101 HOH HOH . Q 8 HOH B 37 437 161 HOH HOH . Q 8 HOH B 38 438 118 HOH HOH . Q 8 HOH B 39 439 171 HOH HOH . R 8 HOH C 1 701 36 HOH HOH . R 8 HOH C 2 702 169 HOH HOH . R 8 HOH C 3 703 140 HOH HOH . R 8 HOH C 4 704 39 HOH HOH . R 8 HOH C 5 705 61 HOH HOH . R 8 HOH C 6 706 74 HOH HOH . R 8 HOH C 7 707 183 HOH HOH . R 8 HOH C 8 708 69 HOH HOH . R 8 HOH C 9 709 72 HOH HOH . R 8 HOH C 10 710 160 HOH HOH . R 8 HOH C 11 711 34 HOH HOH . R 8 HOH C 12 712 38 HOH HOH . R 8 HOH C 13 713 106 HOH HOH . R 8 HOH C 14 714 15 HOH HOH . R 8 HOH C 15 715 59 HOH HOH . R 8 HOH C 16 716 23 HOH HOH . R 8 HOH C 17 717 115 HOH HOH . R 8 HOH C 18 718 17 HOH HOH . R 8 HOH C 19 719 128 HOH HOH . R 8 HOH C 20 720 153 HOH HOH . R 8 HOH C 21 721 56 HOH HOH . R 8 HOH C 22 722 32 HOH HOH . R 8 HOH C 23 723 138 HOH HOH . R 8 HOH C 24 724 145 HOH HOH . R 8 HOH C 25 725 135 HOH HOH . R 8 HOH C 26 726 119 HOH HOH . R 8 HOH C 27 727 16 HOH HOH . R 8 HOH C 28 728 165 HOH HOH . R 8 HOH C 29 729 131 HOH HOH . R 8 HOH C 30 730 111 HOH HOH . R 8 HOH C 31 731 57 HOH HOH . R 8 HOH C 32 732 180 HOH HOH . R 8 HOH C 33 733 97 HOH HOH . R 8 HOH C 34 734 156 HOH HOH . R 8 HOH C 35 735 75 HOH HOH . R 8 HOH C 36 736 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 6 15.903 53.488 88.145 1 73.01 ? C1 GOL 300 B 1 HETATM 2 O O1 GOL . . . K 6 14.809 52.791 88.689 1 74.23 ? O1 GOL 300 B 1 HETATM 3 C C2 GOL . . . K 6 15.383 54.343 87.001 1 73.55 ? C2 GOL 300 B 1 HETATM 4 O O2 GOL . . . K 6 15.686 53.706 85.779 1 75.83 ? O2 GOL 300 B 1 HETATM 5 C C3 GOL . . . K 6 16.056 55.705 87.021 1 68.55 ? C3 GOL 300 B 1 HETATM 6 O O3 GOL . . . K 6 15.777 56.394 88.214 1 64.23 ? O3 GOL 300 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #