data_8CWR
#
_model_server_result.job_id            WDQSNS1T1_I46qSYl-S-jw 
_model_server_result.datetime_utc      '2024-10-10 23:25:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cwr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":602}' 
#
_entry.id    8CWR 
#
_exptl.entry_id    8CWR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8CWR 
_cell.length_a            120.809 
_cell.length_b            120.809 
_cell.length_c            31.758 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CWR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    'R 3' 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 23 A CYS 23 1_555 C FE4 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 C FE1 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? 
metalc ? metalc3 A SG CYS 56 A CYS 56 1_555 C FE2 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc4 A SG CYS 62 A CYS 62 1_555 C FE3 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc5 B N ALA 2 B ALA 439 1_555 G NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc6 B N HIS 3 B HIS 440 1_555 G NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc7 B NE2 HIS 3 B HIS 440 1_555 H NI NI . B NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc8 B N HIS 4 B HIS 441 1_555 G NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? 
metalc ? metalc9 B ND1 HIS 4 B HIS 441 1_555 G NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
metalc ? metalc10 B NE2 HIS 5 B HIS 442 1_555 H NI NI . B NI 604 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc11 B NE2 HIS 6 B HIS 443 1_555 I NI NI . B NI 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc12 B NE2 HIS 6 B HIS 443 1_555 I NI NI . B NI 605 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? 
metalc ? metalc13 B NE2 HIS 7 B HIS 444 1_555 H NI NI . B NI 604 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc14 B NE2 HIS 8 B HIS 445 1_555 I NI NI . B NI 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc15 B NE2 HIS 8 B HIS 445 1_555 I NI NI . B NI 605 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc16 F O1 TRS . B TRS 602 1_555 H NI NI . B NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc17 F O2 TRS . B TRS 602 1_555 H NI NI . B NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc18 F O3 TRS . B TRS 602 1_555 H NI NI . B NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 350 n n 
C C2 TRS sing 351 n n 
C C3 TRS sing 352 n n 
C N TRS sing 353 n n 
C1 O1 TRS sing 354 n n 
C1 H11 TRS sing 355 n n 
C1 H12 TRS sing 356 n n 
C2 O2 TRS sing 357 n n 
C2 H21 TRS sing 358 n n 
C2 H22 TRS sing 359 n n 
C3 O3 TRS sing 360 n n 
C3 H31 TRS sing 361 n n 
C3 H32 TRS sing 362 n n 
N HN1 TRS sing 363 n n 
N HN2 TRS sing 364 n n 
N HN3 TRS sing 365 n n 
O1 HO1 TRS sing 366 n n 
O2 HO2 TRS sing 367 n n 
O3 HO3 TRS sing 368 n n 
#
_atom_sites.entry_id                     8CWR 
_atom_sites.fract_transf_matrix[1][1]    0.008278 
_atom_sites.fract_transf_matrix[1][2]    0.004779 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.031488 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SF4 A 1 101 200 SF4 SF4 . 
D 4 SO4 A 1 102 301 SO4 SO4 . 
E 4 SO4 B 1 601 601 SO4 SO4 . 
F 5 TRS B 1 602 701 TRS TRS . 
G 6 NI B 1 603 1 NI NI . 
H 6 NI B 1 604 2 NI NI . 
I 6 NI B 1 605 4 NI NI . 
J 7 HOH A 1 201 58 HOH HOH . 
J 7 HOH A 2 202 74 HOH HOH . 
J 7 HOH A 3 203 87 HOH HOH . 
J 7 HOH A 4 204 60 HOH HOH . 
J 7 HOH A 5 205 102 HOH HOH . 
J 7 HOH A 6 206 62 HOH HOH . 
J 7 HOH A 7 207 16 HOH HOH . 
J 7 HOH A 8 208 14 HOH HOH . 
J 7 HOH A 9 209 35 HOH HOH . 
J 7 HOH A 10 210 44 HOH HOH . 
J 7 HOH A 11 211 40 HOH HOH . 
J 7 HOH A 12 212 19 HOH HOH . 
J 7 HOH A 13 213 65 HOH HOH . 
J 7 HOH A 14 214 27 HOH HOH . 
J 7 HOH A 15 215 72 HOH HOH . 
J 7 HOH A 16 216 47 HOH HOH . 
J 7 HOH A 17 217 54 HOH HOH . 
J 7 HOH A 18 218 12 HOH HOH . 
J 7 HOH A 19 219 104 HOH HOH . 
J 7 HOH A 20 220 31 HOH HOH . 
J 7 HOH A 21 221 83 HOH HOH . 
J 7 HOH A 22 222 11 HOH HOH . 
J 7 HOH A 23 223 23 HOH HOH . 
J 7 HOH A 24 224 13 HOH HOH . 
J 7 HOH A 25 225 51 HOH HOH . 
J 7 HOH A 26 226 50 HOH HOH . 
J 7 HOH A 27 227 88 HOH HOH . 
J 7 HOH A 28 228 105 HOH HOH . 
J 7 HOH A 29 229 69 HOH HOH . 
J 7 HOH A 30 230 71 HOH HOH . 
J 7 HOH A 31 231 38 HOH HOH . 
J 7 HOH A 32 232 36 HOH HOH . 
J 7 HOH A 33 233 96 HOH HOH . 
J 7 HOH A 34 234 52 HOH HOH . 
J 7 HOH A 35 235 53 HOH HOH . 
J 7 HOH A 36 236 108 HOH HOH . 
J 7 HOH A 37 237 109 HOH HOH . 
J 7 HOH A 38 238 107 HOH HOH . 
J 7 HOH A 39 239 66 HOH HOH . 
J 7 HOH A 40 240 49 HOH HOH . 
J 7 HOH A 41 241 93 HOH HOH . 
K 7 HOH B 1 701 80 HOH HOH . 
K 7 HOH B 2 702 57 HOH HOH . 
K 7 HOH B 3 703 79 HOH HOH . 
K 7 HOH B 4 704 77 HOH HOH . 
K 7 HOH B 5 705 110 HOH HOH . 
K 7 HOH B 6 706 15 HOH HOH . 
K 7 HOH B 7 707 78 HOH HOH . 
K 7 HOH B 8 708 18 HOH HOH . 
K 7 HOH B 9 709 5 HOH HOH . 
K 7 HOH B 10 710 17 HOH HOH . 
K 7 HOH B 11 711 101 HOH HOH . 
K 7 HOH B 12 712 82 HOH HOH . 
K 7 HOH B 13 713 64 HOH HOH . 
K 7 HOH B 14 714 8 HOH HOH . 
K 7 HOH B 15 715 32 HOH HOH . 
K 7 HOH B 16 716 98 HOH HOH . 
K 7 HOH B 17 717 1 HOH HOH . 
K 7 HOH B 18 718 112 HOH HOH . 
K 7 HOH B 19 719 61 HOH HOH . 
K 7 HOH B 20 720 95 HOH HOH . 
K 7 HOH B 21 721 30 HOH HOH . 
K 7 HOH B 22 722 3 HOH HOH . 
K 7 HOH B 23 723 24 HOH HOH . 
K 7 HOH B 24 724 41 HOH HOH . 
K 7 HOH B 25 725 9 HOH HOH . 
K 7 HOH B 26 726 29 HOH HOH . 
K 7 HOH B 27 727 97 HOH HOH . 
K 7 HOH B 28 728 70 HOH HOH . 
K 7 HOH B 29 729 86 HOH HOH . 
K 7 HOH B 30 730 20 HOH HOH . 
K 7 HOH B 31 731 43 HOH HOH . 
K 7 HOH B 32 732 91 HOH HOH . 
K 7 HOH B 33 733 28 HOH HOH . 
K 7 HOH B 34 734 34 HOH HOH . 
K 7 HOH B 35 735 22 HOH HOH . 
K 7 HOH B 36 736 26 HOH HOH . 
K 7 HOH B 37 737 7 HOH HOH . 
K 7 HOH B 38 738 92 HOH HOH . 
K 7 HOH B 39 739 21 HOH HOH . 
K 7 HOH B 40 740 6 HOH HOH . 
K 7 HOH B 41 741 4 HOH HOH . 
K 7 HOH B 42 742 10 HOH HOH . 
K 7 HOH B 43 743 114 HOH HOH . 
K 7 HOH B 44 744 68 HOH HOH . 
K 7 HOH B 45 745 46 HOH HOH . 
K 7 HOH B 46 746 25 HOH HOH . 
K 7 HOH B 47 747 63 HOH HOH . 
K 7 HOH B 48 748 100 HOH HOH . 
K 7 HOH B 49 749 39 HOH HOH . 
K 7 HOH B 50 750 89 HOH HOH . 
K 7 HOH B 51 751 2 HOH HOH . 
K 7 HOH B 52 752 33 HOH HOH . 
K 7 HOH B 53 753 56 HOH HOH . 
K 7 HOH B 54 754 103 HOH HOH . 
K 7 HOH B 55 755 84 HOH HOH . 
K 7 HOH B 56 756 76 HOH HOH . 
K 7 HOH B 57 757 55 HOH HOH . 
K 7 HOH B 58 758 111 HOH HOH . 
K 7 HOH B 59 759 37 HOH HOH . 
K 7 HOH B 60 760 99 HOH HOH . 
K 7 HOH B 61 761 113 HOH HOH . 
K 7 HOH B 62 762 42 HOH HOH . 
K 7 HOH B 63 763 81 HOH HOH . 
K 7 HOH B 64 764 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . F 5 -4.117 10.594 19.743 1 35.45 ? C TRS 602 B 1 
HETATM 2 C C1 TRS . . . F 5 -2.818 10.252 19.018 1 30.47 ? C1 TRS 602 B 1 
HETATM 3 C C2 TRS . . . F 5 -5.231 10.877 18.74 1 39.06 ? C2 TRS 602 B 1 
HETATM 4 C C3 TRS . . . F 5 -4.53 9.473 20.689 1 22.98 ? C3 TRS 602 B 1 
HETATM 5 N N TRS . . . F 5 -3.885 11.832 20.561 1 54.05 ? N TRS 602 B 1 
HETATM 6 O O1 TRS . . . F 5 -3.027 9.331 17.962 1 27.63 ? O1 TRS 602 B 1 
HETATM 7 O O2 TRS . . . F 5 -5.731 9.689 18.147 1 29.21 ? O2 TRS 602 B 1 
HETATM 8 O O3 TRS . . . F 5 -3.475 8.559 20.927 1 51.39 ? O3 TRS 602 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#