data_8CWR # _model_server_result.job_id OyGJw8bPxviWRMZsqot0tQ _model_server_result.datetime_utc '2024-10-10 23:35:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cwr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":604}' # _entry.id 8CWR # _exptl.entry_id 8CWR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CWR _cell.length_a 120.809 _cell.length_b 120.809 _cell.length_c 31.758 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CWR _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 23 A CYS 23 1_555 C FE4 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 C FE1 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc3 A SG CYS 56 A CYS 56 1_555 C FE2 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 A SG CYS 62 A CYS 62 1_555 C FE3 SF4 . A SF4 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 B N ALA 2 B ALA 439 1_555 G NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc6 B N HIS 3 B HIS 440 1_555 G NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc7 B NE2 HIS 3 B HIS 440 1_555 H NI NI . B NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc8 B N HIS 4 B HIS 441 1_555 G NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc9 B ND1 HIS 4 B HIS 441 1_555 G NI NI . B NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc10 B NE2 HIS 5 B HIS 442 1_555 H NI NI . B NI 604 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc11 B NE2 HIS 6 B HIS 443 1_555 I NI NI . B NI 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc12 B NE2 HIS 6 B HIS 443 1_555 I NI NI . B NI 605 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc13 B NE2 HIS 7 B HIS 444 1_555 H NI NI . B NI 604 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc14 B NE2 HIS 8 B HIS 445 1_555 I NI NI . B NI 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc15 B NE2 HIS 8 B HIS 445 1_555 I NI NI . B NI 605 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc16 F O1 TRS . B TRS 602 1_555 H NI NI . B NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc17 F O2 TRS . B TRS 602 1_555 H NI NI . B NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc18 F O3 TRS . B TRS 602 1_555 H NI NI . B NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8CWR _atom_sites.fract_transf_matrix[1][1] 0.008278 _atom_sites.fract_transf_matrix[1][2] 0.004779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SF4 A 1 101 200 SF4 SF4 . D 4 SO4 A 1 102 301 SO4 SO4 . E 4 SO4 B 1 601 601 SO4 SO4 . F 5 TRS B 1 602 701 TRS TRS . G 6 NI B 1 603 1 NI NI . H 6 NI B 1 604 2 NI NI . I 6 NI B 1 605 4 NI NI . J 7 HOH A 1 201 58 HOH HOH . J 7 HOH A 2 202 74 HOH HOH . J 7 HOH A 3 203 87 HOH HOH . J 7 HOH A 4 204 60 HOH HOH . J 7 HOH A 5 205 102 HOH HOH . J 7 HOH A 6 206 62 HOH HOH . J 7 HOH A 7 207 16 HOH HOH . J 7 HOH A 8 208 14 HOH HOH . J 7 HOH A 9 209 35 HOH HOH . J 7 HOH A 10 210 44 HOH HOH . J 7 HOH A 11 211 40 HOH HOH . J 7 HOH A 12 212 19 HOH HOH . J 7 HOH A 13 213 65 HOH HOH . J 7 HOH A 14 214 27 HOH HOH . J 7 HOH A 15 215 72 HOH HOH . J 7 HOH A 16 216 47 HOH HOH . J 7 HOH A 17 217 54 HOH HOH . J 7 HOH A 18 218 12 HOH HOH . J 7 HOH A 19 219 104 HOH HOH . J 7 HOH A 20 220 31 HOH HOH . J 7 HOH A 21 221 83 HOH HOH . J 7 HOH A 22 222 11 HOH HOH . J 7 HOH A 23 223 23 HOH HOH . J 7 HOH A 24 224 13 HOH HOH . J 7 HOH A 25 225 51 HOH HOH . J 7 HOH A 26 226 50 HOH HOH . J 7 HOH A 27 227 88 HOH HOH . J 7 HOH A 28 228 105 HOH HOH . J 7 HOH A 29 229 69 HOH HOH . J 7 HOH A 30 230 71 HOH HOH . J 7 HOH A 31 231 38 HOH HOH . J 7 HOH A 32 232 36 HOH HOH . J 7 HOH A 33 233 96 HOH HOH . J 7 HOH A 34 234 52 HOH HOH . J 7 HOH A 35 235 53 HOH HOH . J 7 HOH A 36 236 108 HOH HOH . J 7 HOH A 37 237 109 HOH HOH . J 7 HOH A 38 238 107 HOH HOH . J 7 HOH A 39 239 66 HOH HOH . J 7 HOH A 40 240 49 HOH HOH . J 7 HOH A 41 241 93 HOH HOH . K 7 HOH B 1 701 80 HOH HOH . K 7 HOH B 2 702 57 HOH HOH . K 7 HOH B 3 703 79 HOH HOH . K 7 HOH B 4 704 77 HOH HOH . K 7 HOH B 5 705 110 HOH HOH . K 7 HOH B 6 706 15 HOH HOH . K 7 HOH B 7 707 78 HOH HOH . K 7 HOH B 8 708 18 HOH HOH . K 7 HOH B 9 709 5 HOH HOH . K 7 HOH B 10 710 17 HOH HOH . K 7 HOH B 11 711 101 HOH HOH . K 7 HOH B 12 712 82 HOH HOH . K 7 HOH B 13 713 64 HOH HOH . K 7 HOH B 14 714 8 HOH HOH . K 7 HOH B 15 715 32 HOH HOH . K 7 HOH B 16 716 98 HOH HOH . K 7 HOH B 17 717 1 HOH HOH . K 7 HOH B 18 718 112 HOH HOH . K 7 HOH B 19 719 61 HOH HOH . K 7 HOH B 20 720 95 HOH HOH . K 7 HOH B 21 721 30 HOH HOH . K 7 HOH B 22 722 3 HOH HOH . K 7 HOH B 23 723 24 HOH HOH . K 7 HOH B 24 724 41 HOH HOH . K 7 HOH B 25 725 9 HOH HOH . K 7 HOH B 26 726 29 HOH HOH . K 7 HOH B 27 727 97 HOH HOH . K 7 HOH B 28 728 70 HOH HOH . K 7 HOH B 29 729 86 HOH HOH . K 7 HOH B 30 730 20 HOH HOH . K 7 HOH B 31 731 43 HOH HOH . K 7 HOH B 32 732 91 HOH HOH . K 7 HOH B 33 733 28 HOH HOH . K 7 HOH B 34 734 34 HOH HOH . K 7 HOH B 35 735 22 HOH HOH . K 7 HOH B 36 736 26 HOH HOH . K 7 HOH B 37 737 7 HOH HOH . K 7 HOH B 38 738 92 HOH HOH . K 7 HOH B 39 739 21 HOH HOH . K 7 HOH B 40 740 6 HOH HOH . K 7 HOH B 41 741 4 HOH HOH . K 7 HOH B 42 742 10 HOH HOH . K 7 HOH B 43 743 114 HOH HOH . K 7 HOH B 44 744 68 HOH HOH . K 7 HOH B 45 745 46 HOH HOH . K 7 HOH B 46 746 25 HOH HOH . K 7 HOH B 47 747 63 HOH HOH . K 7 HOH B 48 748 100 HOH HOH . K 7 HOH B 49 749 39 HOH HOH . K 7 HOH B 50 750 89 HOH HOH . K 7 HOH B 51 751 2 HOH HOH . K 7 HOH B 52 752 33 HOH HOH . K 7 HOH B 53 753 56 HOH HOH . K 7 HOH B 54 754 103 HOH HOH . K 7 HOH B 55 755 84 HOH HOH . K 7 HOH B 56 756 76 HOH HOH . K 7 HOH B 57 757 55 HOH HOH . K 7 HOH B 58 758 111 HOH HOH . K 7 HOH B 59 759 37 HOH HOH . K 7 HOH B 60 760 99 HOH HOH . K 7 HOH B 61 761 113 HOH HOH . K 7 HOH B 62 762 42 HOH HOH . K 7 HOH B 63 763 81 HOH HOH . K 7 HOH B 64 764 67 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x -4.494 _atom_site.Cartn_y 8.045 _atom_site.Cartn_z 18.858 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.61 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 604 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #