data_8CX5
#
_model_server_result.job_id            y1sgCdCkpf0whVoHOTyIUQ 
_model_server_result.datetime_utc      '2024-11-22 19:33:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cx5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":206}' 
#
_entry.id    8CX5 
#
_exptl.entry_id    8CX5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.85 
_cell.angle_gamma         90 
_cell.entry_id            8CX5 
_cell.length_a            41.21 
_cell.length_b            65.661 
_cell.length_c            61.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CX5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,L 1 1 
B,F,G,H,I,J,K,M 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             K 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE ARG 13 A ARG 12 1_555 D C32 P7U . A P7U 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale2 A NH1 ARG 13 A ARG 12 1_555 D C24 P7U . A P7U 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
covale ? covale3 B NE ARG 13 B ARG 12 1_555 G C32 P7U . B P7U 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
covale ? covale4 B NH1 ARG 13 B ARG 12 1_555 G C24 P7U . B P7U 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? 
metalc ? metalc1 A OG SER 18 A SER 17 1_555 C MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc2 C MG MG . A MG 201 1_555 E O3B GDP . A GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc3 C MG MG . A MG 201 1_555 L O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc4 C MG MG . A MG 201 1_555 L O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? 
metalc ? metalc5 C MG MG . A MG 201 1_555 L O HOH . A HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc6 B OG SER 18 B SER 17 1_555 F MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc7 B OG SER 123 B SER 122 1_555 K NA NA . B NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? 
metalc ? metalc8 B OE1 GLU 169 B GLU 168 1_555 K NA NA . B NA 206 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? 
metalc ? metalc9 F MG MG . B MG 201 1_555 J O3B GDP . B GDP 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc10 F MG MG . B MG 201 1_555 M O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc11 F MG MG . B MG 201 1_555 M O HOH . B HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? 
metalc ? metalc12 F MG MG . B MG 201 1_555 M O HOH . B HOH 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc13 F MG MG . B MG 201 1_555 M O HOH . B HOH 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8CX5 
_atom_sites.fract_transf_matrix[1][1]    0.024266 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005092 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01523 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016715 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 201 202 MG MG . 
D 3 P7U A 1 202 301 P7U ZZ4 . 
E 4 GDP A 1 203 201 GDP GDP . 
F 2 MG B 1 201 202 MG MG . 
G 3 P7U B 1 202 301 P7U ZZ4 . 
H 5 PO4 B 1 203 303 PO4 PO4 . 
I 5 PO4 B 1 204 304 PO4 PO4 . 
J 4 GDP B 1 205 201 GDP GDP . 
K 6 NA B 1 206 1 NA NA . 
L 7 HOH A 1 301 293 HOH HOH . 
L 7 HOH A 2 302 251 HOH HOH . 
L 7 HOH A 3 303 152 HOH HOH . 
L 7 HOH A 4 304 232 HOH HOH . 
L 7 HOH A 5 305 35 HOH HOH . 
L 7 HOH A 6 306 112 HOH HOH . 
L 7 HOH A 7 307 10 HOH HOH . 
L 7 HOH A 8 308 180 HOH HOH . 
L 7 HOH A 9 309 19 HOH HOH . 
L 7 HOH A 10 310 95 HOH HOH . 
L 7 HOH A 11 311 4 HOH HOH . 
L 7 HOH A 12 312 14 HOH HOH . 
L 7 HOH A 13 313 116 HOH HOH . 
L 7 HOH A 14 314 5 HOH HOH . 
L 7 HOH A 15 315 80 HOH HOH . 
L 7 HOH A 16 316 31 HOH HOH . 
L 7 HOH A 17 317 121 HOH HOH . 
L 7 HOH A 18 318 131 HOH HOH . 
L 7 HOH A 19 319 79 HOH HOH . 
L 7 HOH A 20 320 17 HOH HOH . 
L 7 HOH A 21 321 141 HOH HOH . 
L 7 HOH A 22 322 9 HOH HOH . 
L 7 HOH A 23 323 133 HOH HOH . 
L 7 HOH A 24 324 33 HOH HOH . 
L 7 HOH A 25 325 78 HOH HOH . 
L 7 HOH A 26 326 200 HOH HOH . 
L 7 HOH A 27 327 30 HOH HOH . 
L 7 HOH A 28 328 191 HOH HOH . 
L 7 HOH A 29 329 20 HOH HOH . 
L 7 HOH A 30 330 54 HOH HOH . 
L 7 HOH A 31 331 15 HOH HOH . 
L 7 HOH A 32 332 26 HOH HOH . 
L 7 HOH A 33 333 75 HOH HOH . 
L 7 HOH A 34 334 59 HOH HOH . 
L 7 HOH A 35 335 184 HOH HOH . 
L 7 HOH A 36 336 58 HOH HOH . 
L 7 HOH A 37 337 24 HOH HOH . 
L 7 HOH A 38 338 84 HOH HOH . 
L 7 HOH A 39 339 244 HOH HOH . 
L 7 HOH A 40 340 114 HOH HOH . 
L 7 HOH A 41 341 65 HOH HOH . 
L 7 HOH A 42 342 195 HOH HOH . 
L 7 HOH A 43 343 70 HOH HOH . 
L 7 HOH A 44 344 2 HOH HOH . 
L 7 HOH A 45 345 46 HOH HOH . 
L 7 HOH A 46 346 42 HOH HOH . 
L 7 HOH A 47 347 62 HOH HOH . 
L 7 HOH A 48 348 188 HOH HOH . 
L 7 HOH A 49 349 34 HOH HOH . 
L 7 HOH A 50 350 149 HOH HOH . 
L 7 HOH A 51 351 23 HOH HOH . 
L 7 HOH A 52 352 61 HOH HOH . 
L 7 HOH A 53 353 160 HOH HOH . 
L 7 HOH A 54 354 118 HOH HOH . 
L 7 HOH A 55 355 192 HOH HOH . 
L 7 HOH A 56 356 39 HOH HOH . 
L 7 HOH A 57 357 169 HOH HOH . 
L 7 HOH A 58 358 159 HOH HOH . 
L 7 HOH A 59 359 222 HOH HOH . 
L 7 HOH A 60 360 150 HOH HOH . 
L 7 HOH A 61 361 109 HOH HOH . 
L 7 HOH A 62 362 38 HOH HOH . 
L 7 HOH A 63 363 177 HOH HOH . 
L 7 HOH A 64 364 194 HOH HOH . 
L 7 HOH A 65 365 123 HOH HOH . 
L 7 HOH A 66 366 156 HOH HOH . 
L 7 HOH A 67 367 25 HOH HOH . 
L 7 HOH A 68 368 147 HOH HOH . 
L 7 HOH A 69 369 106 HOH HOH . 
L 7 HOH A 70 370 103 HOH HOH . 
L 7 HOH A 71 371 220 HOH HOH . 
L 7 HOH A 72 372 128 HOH HOH . 
L 7 HOH A 73 373 179 HOH HOH . 
L 7 HOH A 74 374 82 HOH HOH . 
L 7 HOH A 75 375 18 HOH HOH . 
L 7 HOH A 76 376 186 HOH HOH . 
L 7 HOH A 77 377 53 HOH HOH . 
L 7 HOH A 78 378 77 HOH HOH . 
L 7 HOH A 79 379 43 HOH HOH . 
L 7 HOH A 80 380 189 HOH HOH . 
L 7 HOH A 81 381 254 HOH HOH . 
L 7 HOH A 82 382 314 HOH HOH . 
L 7 HOH A 83 383 204 HOH HOH . 
L 7 HOH A 84 384 155 HOH HOH . 
L 7 HOH A 85 385 129 HOH HOH . 
L 7 HOH A 86 386 91 HOH HOH . 
L 7 HOH A 87 387 126 HOH HOH . 
L 7 HOH A 88 388 182 HOH HOH . 
L 7 HOH A 89 389 151 HOH HOH . 
L 7 HOH A 90 390 130 HOH HOH . 
L 7 HOH A 91 391 250 HOH HOH . 
L 7 HOH A 92 392 236 HOH HOH . 
L 7 HOH A 93 393 309 HOH HOH . 
L 7 HOH A 94 394 170 HOH HOH . 
L 7 HOH A 95 395 127 HOH HOH . 
L 7 HOH A 96 396 225 HOH HOH . 
M 7 HOH B 1 301 41 HOH HOH . 
M 7 HOH B 2 302 136 HOH HOH . 
M 7 HOH B 3 303 350 HOH HOH . 
M 7 HOH B 4 304 104 HOH HOH . 
M 7 HOH B 5 305 57 HOH HOH . 
M 7 HOH B 6 306 90 HOH HOH . 
M 7 HOH B 7 307 124 HOH HOH . 
M 7 HOH B 8 308 231 HOH HOH . 
M 7 HOH B 9 309 49 HOH HOH . 
M 7 HOH B 10 310 172 HOH HOH . 
M 7 HOH B 11 311 71 HOH HOH . 
M 7 HOH B 12 312 11 HOH HOH . 
M 7 HOH B 13 313 183 HOH HOH . 
M 7 HOH B 14 314 117 HOH HOH . 
M 7 HOH B 15 315 40 HOH HOH . 
M 7 HOH B 16 316 316 HOH HOH . 
M 7 HOH B 17 317 6 HOH HOH . 
M 7 HOH B 18 318 3 HOH HOH . 
M 7 HOH B 19 319 97 HOH HOH . 
M 7 HOH B 20 320 174 HOH HOH . 
M 7 HOH B 21 321 37 HOH HOH . 
M 7 HOH B 22 322 21 HOH HOH . 
M 7 HOH B 23 323 140 HOH HOH . 
M 7 HOH B 24 324 132 HOH HOH . 
M 7 HOH B 25 325 12 HOH HOH . 
M 7 HOH B 26 326 68 HOH HOH . 
M 7 HOH B 27 327 74 HOH HOH . 
M 7 HOH B 28 328 28 HOH HOH . 
M 7 HOH B 29 329 137 HOH HOH . 
M 7 HOH B 30 330 22 HOH HOH . 
M 7 HOH B 31 331 181 HOH HOH . 
M 7 HOH B 32 332 69 HOH HOH . 
M 7 HOH B 33 333 66 HOH HOH . 
M 7 HOH B 34 334 48 HOH HOH . 
M 7 HOH B 35 335 44 HOH HOH . 
M 7 HOH B 36 336 73 HOH HOH . 
M 7 HOH B 37 337 45 HOH HOH . 
M 7 HOH B 38 338 32 HOH HOH . 
M 7 HOH B 39 339 85 HOH HOH . 
M 7 HOH B 40 340 135 HOH HOH . 
M 7 HOH B 41 341 83 HOH HOH . 
M 7 HOH B 42 342 36 HOH HOH . 
M 7 HOH B 43 343 55 HOH HOH . 
M 7 HOH B 44 344 67 HOH HOH . 
M 7 HOH B 45 345 105 HOH HOH . 
M 7 HOH B 46 346 139 HOH HOH . 
M 7 HOH B 47 347 60 HOH HOH . 
M 7 HOH B 48 348 162 HOH HOH . 
M 7 HOH B 49 349 13 HOH HOH . 
M 7 HOH B 50 350 96 HOH HOH . 
M 7 HOH B 51 351 8 HOH HOH . 
M 7 HOH B 52 352 173 HOH HOH . 
M 7 HOH B 53 353 142 HOH HOH . 
M 7 HOH B 54 354 7 HOH HOH . 
M 7 HOH B 55 355 92 HOH HOH . 
M 7 HOH B 56 356 94 HOH HOH . 
M 7 HOH B 57 357 115 HOH HOH . 
M 7 HOH B 58 358 122 HOH HOH . 
M 7 HOH B 59 359 56 HOH HOH . 
M 7 HOH B 60 360 193 HOH HOH . 
M 7 HOH B 61 361 101 HOH HOH . 
M 7 HOH B 62 362 302 HOH HOH . 
M 7 HOH B 63 363 47 HOH HOH . 
M 7 HOH B 64 364 239 HOH HOH . 
M 7 HOH B 65 365 89 HOH HOH . 
M 7 HOH B 66 366 81 HOH HOH . 
M 7 HOH B 67 367 87 HOH HOH . 
M 7 HOH B 68 368 153 HOH HOH . 
M 7 HOH B 69 369 263 HOH HOH . 
M 7 HOH B 70 370 223 HOH HOH . 
M 7 HOH B 71 371 107 HOH HOH . 
M 7 HOH B 72 372 197 HOH HOH . 
M 7 HOH B 73 373 98 HOH HOH . 
M 7 HOH B 74 374 29 HOH HOH . 
M 7 HOH B 75 375 175 HOH HOH . 
M 7 HOH B 76 376 50 HOH HOH . 
M 7 HOH B 77 377 27 HOH HOH . 
M 7 HOH B 78 378 93 HOH HOH . 
M 7 HOH B 79 379 145 HOH HOH . 
M 7 HOH B 80 380 205 HOH HOH . 
M 7 HOH B 81 381 16 HOH HOH . 
M 7 HOH B 82 382 51 HOH HOH . 
M 7 HOH B 83 383 110 HOH HOH . 
M 7 HOH B 84 384 64 HOH HOH . 
M 7 HOH B 85 385 271 HOH HOH . 
M 7 HOH B 86 386 212 HOH HOH . 
M 7 HOH B 87 387 218 HOH HOH . 
M 7 HOH B 88 388 201 HOH HOH . 
M 7 HOH B 89 389 100 HOH HOH . 
M 7 HOH B 90 390 113 HOH HOH . 
M 7 HOH B 91 391 279 HOH HOH . 
M 7 HOH B 92 392 72 HOH HOH . 
M 7 HOH B 93 393 148 HOH HOH . 
M 7 HOH B 94 394 323 HOH HOH . 
M 7 HOH B 95 395 108 HOH HOH . 
M 7 HOH B 96 396 52 HOH HOH . 
M 7 HOH B 97 397 213 HOH HOH . 
M 7 HOH B 98 398 320 HOH HOH . 
M 7 HOH B 99 399 281 HOH HOH . 
M 7 HOH B 100 400 143 HOH HOH . 
M 7 HOH B 101 401 161 HOH HOH . 
M 7 HOH B 102 402 284 HOH HOH . 
M 7 HOH B 103 403 256 HOH HOH . 
M 7 HOH B 104 404 221 HOH HOH . 
M 7 HOH B 105 405 196 HOH HOH . 
M 7 HOH B 106 406 294 HOH HOH . 
M 7 HOH B 107 407 252 HOH HOH . 
M 7 HOH B 108 408 176 HOH HOH . 
M 7 HOH B 109 409 190 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         K 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               -15.203 
_atom_site.Cartn_y               -6.684 
_atom_site.Cartn_z               33.263 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        51.96 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           206 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#