data_8CXJ
#
_model_server_result.job_id            Vy9HLz5cwnTBlmTz-Kgpxw 
_model_server_result.datetime_utc      '2025-07-18 01:14:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cxj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":202}' 
#
_entry.id    8CXJ 
#
_exptl.entry_id    8CXJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CXJ 
_cell.length_a            76.962 
_cell.length_b            76.962 
_cell.length_c            334.849 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8CXJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    'P 4cw' 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
? dimeric 2 author_defined_assembly 4 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,F,I,J,K,L,M,N,DA,EA,IA 1 1 
B,E,O,P,Q,R,S,T,CA,FA,HA 2 1 
C,G,U,V,W,X,Y,GA,JA 3 1 
D,H,Z,AA,BA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 O N N 
? 3 P N N 
? 3 U N N 
? 3 DA N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     8CXJ 
_atom_sites.fract_transf_matrix[1][1]    0.012993 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012993 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002986 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 GOL A 1 201 201 GOL GOL . 
J 4 SO4 A 1 202 5 SO4 SO4 . 
K 4 SO4 A 1 203 6 SO4 SO4 . 
L 4 SO4 A 1 204 13 SO4 SO4 . 
M 4 SO4 A 1 205 14 SO4 SO4 . 
N 5 CL A 1 206 2 CL CL . 
O 3 GOL C 1 201 201 GOL GOL . 
P 3 GOL C 1 202 202 GOL GOL . 
Q 4 SO4 C 1 203 3 SO4 SO4 . 
R 4 SO4 C 1 204 4 SO4 SO4 . 
S 4 SO4 C 1 205 7 SO4 SO4 . 
T 4 SO4 C 1 206 15 SO4 SO4 . 
U 3 GOL E 1 201 201 GOL GOL . 
V 4 SO4 E 1 202 1 SO4 SO4 . 
W 4 SO4 E 1 203 8 SO4 SO4 . 
X 4 SO4 E 1 204 9 SO4 SO4 . 
Y 4 SO4 E 1 205 11 SO4 SO4 . 
Z 4 SO4 G 1 201 2 SO4 SO4 . 
AA 4 SO4 G 1 202 10 SO4 SO4 . 
BA 5 CL G 1 203 1 CL CL . 
CA 5 CL D 1 201 3 CL CL . 
DA 3 GOL B 1 201 201 GOL GOL . 
EA 6 HOH A 1 301 4 HOH HOH . 
FA 6 HOH C 1 301 5 HOH HOH . 
FA 6 HOH C 2 302 10 HOH HOH . 
GA 6 HOH E 1 301 9 HOH HOH . 
HA 6 HOH D 1 301 8 HOH HOH . 
IA 6 HOH B 1 301 3 HOH HOH . 
IA 6 HOH B 2 302 2 HOH HOH . 
IA 6 HOH B 3 303 1 HOH HOH . 
JA 6 HOH F 1 201 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . P 3 23.881 13.891 -11.226 1 134.79 ? C1 GOL 202 C 1 
HETATM 2 O O1 GOL . . . P 3 24.409 13.047 -10.254 1 129.28 ? O1 GOL 202 C 1 
HETATM 3 C C2 GOL . . . P 3 23.099 13.007 -12.225 1 136.09 ? C2 GOL 202 C 1 
HETATM 4 O O2 GOL . . . P 3 21.856 12.637 -11.732 1 133.46 ? O2 GOL 202 C 1 
HETATM 5 C C3 GOL . . . P 3 23.001 13.85 -13.523 1 138.81 ? C3 GOL 202 C 1 
HETATM 6 O O3 GOL . . . P 3 22.977 15.191 -13.14 1 148.34 ? O3 GOL 202 C 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#