data_8CY8 # _model_server_result.job_id QsywE0HDVBy3Me9dEIlnvw _model_server_result.datetime_utc '2024-12-21 13:25:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":401}' # _entry.id 8CY8 # _exptl.entry_id 8CY8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 100.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANEDIAL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CY8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _chem_comp.formula 'C5 H8 O2' _chem_comp.formula_weight 100.116 _chem_comp.id PTD _chem_comp.mon_nstd_flag . _chem_comp.name PENTANEDIAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PTD sing 275 n n C1 O1 PTD doub 276 n n C1 HC1 PTD sing 277 n n C2 C3 PTD sing 278 n n C2 HC21 PTD sing 279 n n C2 HC22 PTD sing 280 n n C3 C4 PTD sing 281 n n C3 HC31 PTD sing 282 n n C3 HC32 PTD sing 283 n n C4 C5 PTD sing 284 n n C4 HC41 PTD sing 285 n n C4 HC42 PTD sing 286 n n C5 O5 PTD doub 287 n n C5 HC5 PTD sing 288 n n # _atom_sites.entry_id 8CY8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 PTD A 1 401 401 PTD PTD . N 2 PTD B 1 401 401 PTD PTD . O 2 PTD D 1 401 401 PTD PTD . P 2 PTD D 1 402 401 PTD PTD . Q 2 PTD E 1 401 401 PTD PTD . R 2 PTD F 1 401 401 PTD PTD . S 2 PTD G 1 401 401 PTD PTD . T 2 PTD H 1 401 401 PTD PTD . U 2 PTD I 1 401 401 PTD PTD . V 2 PTD J 1 401 401 PTD PTD . W 2 PTD K 1 401 401 PTD PTD . X 2 PTD L 1 401 401 PTD PTD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTD . . . W 2 152.5 185.286 154.854 1 34.67 ? C1 PTD 401 K 1 HETATM 2 C C2 PTD . . . W 2 153.456 186.369 155.339 1 34.67 ? C2 PTD 401 K 1 HETATM 3 C C3 PTD . . . W 2 154.012 187.187 154.18 1 34.67 ? C3 PTD 401 K 1 HETATM 4 C C4 PTD . . . W 2 155.315 187.905 154.521 1 34.67 ? C4 PTD 401 K 1 HETATM 5 C C5 PTD . . . W 2 156.053 187.312 155.716 1 34.67 ? C5 PTD 401 K 1 HETATM 6 O O1 PTD . . . W 2 151.547 185.585 154.215 1 34.67 ? O1 PTD 401 K 1 HETATM 7 O O5 PTD . . . W 2 157.089 187.777 156.05 1 34.67 ? O5 PTD 401 K 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #