data_8CZT # _model_server_result.job_id YJn0hLcpWVGLluRaZn8BuQ _model_server_result.datetime_utc '2024-11-16 08:55:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8czt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8CZT # _exptl.entry_id 8CZT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 532.671 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1~{S},2~{R})-2-cyclohexylcyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.41 _cell.angle_gamma 90 _cell.entry_id 8CZT _cell.length_a 101.619 _cell.length_b 56.935 _cell.length_c 49.83 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CZT _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.996777 0 46.066814 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 148 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C14 _struct_conn.ptnr2_label_comp_id P8L _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id P8L _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.802 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C24 H42 N3 O8 S 1' _chem_comp.formula_weight 532.671 _chem_comp.id P8L _chem_comp.mon_nstd_flag . _chem_comp.name '[(1~{S},2~{R})-2-cyclohexylcyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 P8L sing 237 n n C21 C22 P8L sing 238 n n C21 C20 P8L sing 239 n n C22 C23 P8L sing 240 n n C4 C6 P8L sing 241 n n C4 C3 P8L sing 242 n n C20 C19 P8L sing 243 n n C23 C24 P8L sing 244 n n C3 C2 P8L sing 245 n n C19 C24 P8L sing 246 n n C19 C17 P8L sing 247 n n N1 C2 P8L sing 248 n n N1 C1 P8L sing 249 n n C2 C7 P8L sing 250 n n C17 C16 P8L sing 251 n n C17 C18 P8L sing 252 n n O5 C1 P8L sing 253 n n O5 C15 P8L sing 254 n n C1 O1 P8L doub 255 n n C16 C15 P8L sing 256 n n C16 C18 P8L sing 257 n n C7 O4 P8L doub 258 n n C7 N2 P8L sing 259 n n N2 C8 P8L sing 260 n n O3 C14 P8L sing 261 n n SG C14 P8L sing 262 n n C8 C14 P8L sing 263 n n C8 C9 P8L sing 264 n n C10 C9 P8L sing 265 n n C10 C13 P8L sing 266 n n C10 C11 P8L sing 267 n n C13 C12 P8L sing 268 n n C12 N3 P8L sing 269 n n C11 O2 P8L doub 270 n n C11 N3 P8L sing 271 n n SG O6 P8L doub 272 n n N1 H1 P8L sing 273 n n C2 H2 P8L sing 274 n n C3 H3 P8L sing 275 n n C3 H4 P8L sing 276 n n C4 H5 P8L sing 277 n n C6 H6 P8L sing 278 n n C6 H7 P8L sing 279 n n C6 H8 P8L sing 280 n n C8 H9 P8L sing 281 n n C9 H10 P8L sing 282 n n C9 H11 P8L sing 283 n n C10 H12 P8L sing 284 n n C16 H13 P8L sing 285 n n C17 H14 P8L sing 286 n n C19 H15 P8L sing 287 n n C20 H16 P8L sing 288 n n C20 H17 P8L sing 289 n n C21 H18 P8L sing 290 n n C21 H19 P8L sing 291 n n C22 H20 P8L sing 292 n n C22 H21 P8L sing 293 n n C12 H22 P8L sing 294 n n C12 H23 P8L sing 295 n n C13 H24 P8L sing 296 n n C13 H25 P8L sing 297 n n C14 H26 P8L sing 298 n n C15 H27 P8L sing 299 n n C15 H28 P8L sing 300 n n C18 H29 P8L sing 301 n n C18 H30 P8L sing 302 n n C23 H31 P8L sing 303 n n C23 H32 P8L sing 304 n n C24 H33 P8L sing 305 n n C24 H34 P8L sing 306 n n C5 H35 P8L sing 307 n n C5 H36 P8L sing 308 n n C5 H37 P8L sing 309 n n N2 H38 P8L sing 310 n n N3 H39 P8L sing 311 n n O3 H40 P8L sing 312 n n SG O7 P8L sing 313 n n SG O8 P8L sing 314 n n O7 H41 P8L sing 315 n n O8 H42 P8L sing 316 n n # _atom_sites.entry_id 8CZT _atom_sites.fract_transf_matrix[1][1] 0.009841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P8L A 1 401 1 P8L C19 . C 3 HOH A 1 501 32 HOH HOH . C 3 HOH A 2 502 36 HOH HOH . C 3 HOH A 3 503 18 HOH HOH . C 3 HOH A 4 504 17 HOH HOH . C 3 HOH A 5 505 30 HOH HOH . C 3 HOH A 6 506 50 HOH HOH . C 3 HOH A 7 507 38 HOH HOH . C 3 HOH A 8 508 29 HOH HOH . C 3 HOH A 9 509 40 HOH HOH . C 3 HOH A 10 510 25 HOH HOH . C 3 HOH A 11 511 4 HOH HOH . C 3 HOH A 12 512 9 HOH HOH . C 3 HOH A 13 513 41 HOH HOH . C 3 HOH A 14 514 2 HOH HOH . C 3 HOH A 15 515 14 HOH HOH . C 3 HOH A 16 516 24 HOH HOH . C 3 HOH A 17 517 49 HOH HOH . C 3 HOH A 18 518 42 HOH HOH . C 3 HOH A 19 519 51 HOH HOH . C 3 HOH A 20 520 7 HOH HOH . C 3 HOH A 21 521 37 HOH HOH . C 3 HOH A 22 522 28 HOH HOH . C 3 HOH A 23 523 23 HOH HOH . C 3 HOH A 24 524 53 HOH HOH . C 3 HOH A 25 525 13 HOH HOH . C 3 HOH A 26 526 31 HOH HOH . C 3 HOH A 27 527 34 HOH HOH . C 3 HOH A 28 528 8 HOH HOH . C 3 HOH A 29 529 46 HOH HOH . C 3 HOH A 30 530 27 HOH HOH . C 3 HOH A 31 531 11 HOH HOH . C 3 HOH A 32 532 44 HOH HOH . C 3 HOH A 33 533 1 HOH HOH . C 3 HOH A 34 534 6 HOH HOH . C 3 HOH A 35 535 21 HOH HOH . C 3 HOH A 36 536 47 HOH HOH . C 3 HOH A 37 537 5 HOH HOH . C 3 HOH A 38 538 19 HOH HOH . C 3 HOH A 39 539 33 HOH HOH . C 3 HOH A 40 540 52 HOH HOH . C 3 HOH A 41 541 20 HOH HOH . C 3 HOH A 42 542 39 HOH HOH . C 3 HOH A 43 543 43 HOH HOH . C 3 HOH A 44 544 10 HOH HOH . C 3 HOH A 45 545 16 HOH HOH . C 3 HOH A 46 546 35 HOH HOH . C 3 HOH A 47 547 3 HOH HOH . C 3 HOH A 48 548 22 HOH HOH . C 3 HOH A 49 549 12 HOH HOH . C 3 HOH A 50 550 48 HOH HOH . C 3 HOH A 51 551 15 HOH HOH . C 3 HOH A 52 552 45 HOH HOH . C 3 HOH A 53 553 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 P8L . . . B 2 -21.77 24.601 1.59 1 36.41 ? N1 P8L 401 A 1 HETATM 2 C C2 P8L . . . B 2 -21.11 25.863 1.88 1 37.33 ? C2 P8L 401 A 1 HETATM 3 C C3 P8L . . . B 2 -21.318 26.858 0.722 1 32.21 ? C3 P8L 401 A 1 HETATM 4 C C4 P8L . . . B 2 -20.692 26.316 -0.603 1 37.63 ? C4 P8L 401 A 1 HETATM 5 C C6 P8L . . . B 2 -19.145 26.323 -0.526 1 35.2 ? C6 P8L 401 A 1 HETATM 6 C C8 P8L . . . B 2 -21.197 27.564 5.431 1 36.31 ? C8 P8L 401 A 1 HETATM 7 C C9 P8L . . . B 2 -20.579 26.774 6.6 1 28.79 ? C9 P8L 401 A 1 HETATM 8 C C10 P8L . . . B 2 -21.044 25.262 6.554 1 25.3 ? C10 P8L 401 A 1 HETATM 9 C C11 P8L . . . B 2 -20.403 24.475 7.656 1 31.33 ? C11 P8L 401 A 1 HETATM 10 C C16 P8L . . . B 2 -22.355 19.996 3.14 1 43.67 ? C16 P8L 401 A 1 HETATM 11 C C17 P8L . . . B 2 -23.241 19.326 2.036 1 44.91 ? C17 P8L 401 A 1 HETATM 12 C C19 P8L . . . B 2 -22.673 18.525 0.855 1 43.54 ? C19 P8L 401 A 1 HETATM 13 C C20 P8L . . . B 2 -23.584 18.747 -0.361 1 47.06 ? C20 P8L 401 A 1 HETATM 14 C C21 P8L . . . B 2 -23.427 17.677 -1.464 1 45.82 ? C21 P8L 401 A 1 HETATM 15 C C22 P8L . . . B 2 -23.635 16.273 -0.895 1 47.18 ? C22 P8L 401 A 1 HETATM 16 C C1 P8L . . . B 2 -21.625 23.488 2.546 1 37.57 ? C1 P8L 401 A 1 HETATM 17 C C12 P8L . . . B 2 -22.805 23.936 7.621 1 34.7 ? C12 P8L 401 A 1 HETATM 18 C C13 P8L . . . B 2 -22.533 25.157 6.686 1 33.28 ? C13 P8L 401 A 1 HETATM 19 C C14 P8L . . . B 2 -20.815 29.043 5.523 1 33.06 ? C14 P8L 401 A 1 HETATM 20 C C15 P8L . . . B 2 -22.63 21.497 3.428 1 41.28 ? C15 P8L 401 A 1 HETATM 21 C C18 P8L . . . B 2 -23.466 19.073 3.554 1 45.85 ? C18 P8L 401 A 1 HETATM 22 C C23 P8L . . . B 2 -22.556 16.017 0.162 1 53.07 ? C23 P8L 401 A 1 HETATM 23 C C24 P8L . . . B 2 -22.602 17.054 1.307 1 46.61 ? C24 P8L 401 A 1 HETATM 24 C C5 P8L . . . B 2 -21.103 27.227 -1.79 1 31.95 ? C5 P8L 401 A 1 HETATM 25 C C7 P8L . . . B 2 -21.669 26.424 3.195 1 38.03 ? C7 P8L 401 A 1 HETATM 26 N N2 P8L . . . B 2 -20.726 27.022 4.163 1 32.44 ? N2 P8L 401 A 1 HETATM 27 N N3 P8L . . . B 2 -21.454 23.645 8.308 1 31.2 ? N3 P8L 401 A 1 HETATM 28 O O1 P8L . . . B 2 -20.965 23.619 3.526 1 36.5 ? O1 P8L 401 A 1 HETATM 29 O O2 P8L . . . B 2 -19.253 24.482 7.955 1 27.83 ? O2 P8L 401 A 1 HETATM 30 O O3 P8L . . . B 2 -21.599 29.731 4.573 1 37.11 ? O3 P8L 401 A 1 HETATM 31 O O4 P8L . . . B 2 -22.834 26.365 3.435 1 34.82 ? O4 P8L 401 A 1 HETATM 32 O O5 P8L . . . B 2 -22.263 22.251 2.28 1 38.05 ? O5 P8L 401 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #