data_8CZU # _model_server_result.job_id IDWyxVrk5G9ooBhqiHDnAg _model_server_result.datetime_utc '2024-11-16 08:50:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8czu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8CZU # _exptl.entry_id 8CZU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 544.681 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1~{S},2~{S})-2-(cyclohexylmethyl)cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.21 _cell.angle_gamma 90 _cell.entry_id 8CZU _cell.length_a 100.443 _cell.length_b 57.312 _cell.length_c 49.682 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CZU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -18.779914 0 45.995825 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 155 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 148 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C19 _struct_conn.ptnr2_label_comp_id P9R _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id P9R _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.797 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H42 N3 O8 S 1' _chem_comp.formula_weight 544.681 _chem_comp.id P9R _chem_comp.mon_nstd_flag . _chem_comp.name '[(1~{S},2~{S})-2-(cyclohexylmethyl)cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C08 C06 P9R sing 235 n n C30 C29 P9R sing 236 n n C30 C31 P9R sing 237 n n C07 C06 P9R sing 238 n n C29 C28 P9R sing 239 n n C06 C05 P9R sing 240 n n C28 C27 P9R sing 241 n n C31 C32 P9R sing 242 n n C32 C27 P9R sing 243 n n C05 C04 P9R sing 244 n n C27 C26 P9R sing 245 n n C26 C25 P9R sing 246 n n N03 C04 P9R sing 247 n n N03 C02 P9R sing 248 n n C04 C09 P9R sing 249 n n C25 C24 P9R sing 250 n n C25 C33 P9R sing 251 n n O22 C02 P9R sing 252 n n O22 C23 P9R sing 253 n n C02 O01 P9R doub 254 n n C24 C33 P9R sing 255 n n C24 C23 P9R sing 256 n n C09 O21 P9R doub 257 n n C09 N10 P9R sing 258 n n N10 C11 P9R sing 259 n n O20 C19 P9R sing 260 n n C11 C19 P9R sing 261 n n C11 C12 P9R sing 262 n n C12 C13 P9R sing 263 n n C13 C17 P9R sing 264 n n C13 C14 P9R sing 265 n n C17 C16 P9R sing 266 n n C14 O18 P9R doub 267 n n C14 N15 P9R sing 268 n n C16 N15 P9R doub 269 n n C16 H1 P9R sing 270 n n C17 H2 P9R sing 271 n n C17 H3 P9R sing 272 n n C19 H4 P9R sing 273 n n C13 H6 P9R sing 274 n n C12 H7 P9R sing 275 n n C12 H8 P9R sing 276 n n C11 H9 P9R sing 277 n n C04 H10 P9R sing 278 n n C05 H11 P9R sing 279 n n C05 H12 P9R sing 280 n n C06 H13 P9R sing 281 n n C07 H14 P9R sing 282 n n C07 H15 P9R sing 283 n n C07 H16 P9R sing 284 n n C08 H17 P9R sing 285 n n C08 H18 P9R sing 286 n n C08 H19 P9R sing 287 n n C23 H20 P9R sing 288 n n C23 H21 P9R sing 289 n n C24 H22 P9R sing 290 n n C25 H23 P9R sing 291 n n C26 H24 P9R sing 292 n n C26 H25 P9R sing 293 n n C27 H26 P9R sing 294 n n C28 H27 P9R sing 295 n n C28 H28 P9R sing 296 n n C29 H29 P9R sing 297 n n C29 H30 P9R sing 298 n n C30 H31 P9R sing 299 n n C30 H32 P9R sing 300 n n C31 H33 P9R sing 301 n n C31 H34 P9R sing 302 n n C32 H35 P9R sing 303 n n C32 H36 P9R sing 304 n n C33 H37 P9R sing 305 n n C33 H38 P9R sing 306 n n N03 H39 P9R sing 307 n n N10 H40 P9R sing 308 n n O20 H41 P9R sing 309 n n C19 S1 P9R sing 310 n n S1 O1 P9R doub 311 n n S1 O2 P9R sing 312 n n S1 O3 P9R sing 313 n n O2 H5 P9R sing 314 n n O3 H42 P9R sing 315 n n # _atom_sites.entry_id 8CZU _atom_sites.fract_transf_matrix[1][1] 0.009956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id P9R _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id P9R _pdbx_nonpoly_scheme.auth_mon_id C23 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 P9R . . . B 2 -20.336 23.807 7.659 1 43.68 ? C14 P9R 401 A 1 HETATM 2 C C16 P9R . . . B 2 -22.653 23.553 8.04 1 45.61 ? C16 P9R 401 A 1 HETATM 3 C C17 P9R . . . B 2 -22.477 24.559 6.887 1 45.54 ? C17 P9R 401 A 1 HETATM 4 C C19 P9R . . . B 2 -20.69 28.428 5.739 1 44.65 ? C19 P9R 401 A 1 HETATM 5 C C13 P9R . . . B 2 -20.969 24.626 6.562 1 42.02 ? C13 P9R 401 A 1 HETATM 6 C C12 P9R . . . B 2 -20.368 26.022 6.464 1 38.37 ? C12 P9R 401 A 1 HETATM 7 C C11 P9R . . . B 2 -21.041 26.939 5.417 1 43.12 ? C11 P9R 401 A 1 HETATM 8 C C02 P9R . . . B 2 -21.261 23.524 2.37 1 50.28 ? C02 P9R 401 A 1 HETATM 9 C C04 P9R . . . B 2 -20.799 25.818 1.665 1 48.15 ? C04 P9R 401 A 1 HETATM 10 C C05 P9R . . . B 2 -21.386 26.738 0.558 1 52.05 ? C05 P9R 401 A 1 HETATM 11 C C06 P9R . . . B 2 -20.966 26.33 -0.875 1 49.38 ? C06 P9R 401 A 1 HETATM 12 C C07 P9R . . . B 2 -19.474 25.975 -0.975 1 49.53 ? C07 P9R 401 A 1 HETATM 13 C C08 P9R . . . B 2 -21.234 27.434 -1.9 1 51.49 ? C08 P9R 401 A 1 HETATM 14 C C09 P9R . . . B 2 -21.411 26.14 3.038 1 46.98 ? C09 P9R 401 A 1 HETATM 15 C C23 P9R . . . B 2 -22.455 21.605 3.085 1 60.22 ? C23 P9R 401 A 1 HETATM 16 C C24 P9R . . . B 2 -21.937 20.365 2.437 1 67.5 ? C24 P9R 401 A 1 HETATM 17 C C25 P9R . . . B 2 -22.964 19.248 2.165 1 65.77 ? C25 P9R 401 A 1 HETATM 18 C C26 P9R . . . B 2 -23.077 18.741 0.753 1 62.41 ? C26 P9R 401 A 1 HETATM 19 C C27 P9R . . . B 2 -23.09 17.225 0.561 1 62.45 ? C27 P9R 401 A 1 HETATM 20 C C28 P9R . . . B 2 -24.068 16.739 -0.518 1 58.24 ? C28 P9R 401 A 1 HETATM 21 C C29 P9R . . . B 2 -23.875 15.298 -0.955 1 60.31 ? C29 P9R 401 A 1 HETATM 22 C C30 P9R . . . B 2 -22.442 15.033 -1.34 1 64.76 ? C30 P9R 401 A 1 HETATM 23 C C31 P9R . . . B 2 -21.532 15.333 -0.178 1 67.14 ? C31 P9R 401 A 1 HETATM 24 C C32 P9R . . . B 2 -21.649 16.777 0.232 1 60.59 ? C32 P9R 401 A 1 HETATM 25 C C33 P9R . . . B 2 -21.77 19.003 3.075 1 55.8 ? C33 P9R 401 A 1 HETATM 26 N N03 P9R . . . B 2 -21.183 24.436 1.339 1 55.56 ? N03 P9R 401 A 1 HETATM 27 N N10 P9R . . . B 2 -20.603 26.604 4.06 1 48.19 ? N10 P9R 401 A 1 HETATM 28 N N15 P9R . . . B 2 -21.304 23.222 8.462 1 46.3 ? N15 P9R 401 A 1 HETATM 29 O O01 P9R . . . B 2 -20.502 23.423 3.306 1 52.05 ? O01 P9R 401 A 1 HETATM 30 O O18 P9R . . . B 2 -19.133 23.635 7.87 1 41.16 ? O18 P9R 401 A 1 HETATM 31 O O20 P9R . . . B 2 -21.624 29.209 5.062 1 45.84 ? O20 P9R 401 A 1 HETATM 32 O O21 P9R . . . B 2 -22.636 25.954 3.223 1 42.53 ? O21 P9R 401 A 1 HETATM 33 O O22 P9R . . . B 2 -22.349 22.732 2.217 1 58.17 ? O22 P9R 401 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 33 #