data_8CZV
#
_model_server_result.job_id            gn-MYFtEDCtZ1pC0_XouFw 
_model_server_result.datetime_utc      '2024-11-16 09:32:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8czv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8CZV 
#
_exptl.entry_id    8CZV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.652 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1~{S},2~{R})-2-[4,4-bis(fluoranyl)cyclohexyl]cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.47 
_cell.angle_gamma         90 
_cell.entry_id            8CZV 
_cell.length_a            101.47 
_cell.length_b            57.45 
_cell.length_c            49.858 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CZV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -19.05571 0 46.07277 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 155 A CYS 148 1_555 B C19 P8C . A P8C 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.794 ? 
covale ? covale2 A SG CYS 155 A CYS 148 1_555 C C19 PJR . A PJR 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.765 ? 
#
_chem_comp.formula           'C24 H40 F2 N3 O8 S 1' 
_chem_comp.formula_weight    568.652 
_chem_comp.id                P8C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1~{S},2~{R})-2-[4,4-bis(fluoranyl)cyclohexyl]cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C08 C06 P8C sing 237 n n 
F33 C29 P8C sing 238 n n 
F32 C29 P8C sing 239 n n 
C30 C29 P8C sing 240 n n 
C30 C31 P8C sing 241 n n 
C29 C28 P8C sing 242 n n 
C06 C07 P8C sing 243 n n 
C06 C05 P8C sing 244 n n 
C31 C26 P8C sing 245 n n 
C28 C27 P8C sing 246 n n 
C05 C04 P8C sing 247 n n 
C26 C27 P8C sing 248 n n 
C26 C25 P8C sing 249 n n 
N03 C04 P8C sing 250 n n 
N03 C02 P8C sing 251 n n 
C04 C09 P8C sing 252 n n 
O22 C02 P8C sing 253 n n 
O22 C23 P8C sing 254 n n 
C02 O01 P8C doub 255 n n 
C25 C24 P8C sing 256 n n 
C25 C34 P8C sing 257 n n 
C24 C23 P8C sing 258 n n 
C24 C34 P8C sing 259 n n 
C09 O21 P8C doub 260 n n 
C09 N10 P8C sing 261 n n 
N10 C11 P8C sing 262 n n 
O20 C19 P8C sing 263 n n 
S1 C19 P8C sing 264 n n 
C11 C19 P8C sing 265 n n 
C11 C12 P8C sing 266 n n 
C13 C12 P8C sing 267 n n 
C13 C17 P8C sing 268 n n 
C13 C14 P8C sing 269 n n 
C17 C16 P8C sing 270 n n 
C14 O18 P8C doub 271 n n 
C14 N15 P8C sing 272 n n 
C16 N15 P8C sing 273 n n 
C04 H1 P8C sing 274 n n 
C05 H2 P8C sing 275 n n 
C05 H3 P8C sing 276 n n 
C06 H4 P8C sing 277 n n 
C07 H5 P8C sing 278 n n 
C07 H6 P8C sing 279 n n 
C07 H7 P8C sing 280 n n 
C08 H8 P8C sing 281 n n 
C08 H9 P8C sing 282 n n 
C08 H10 P8C sing 283 n n 
C11 H11 P8C sing 284 n n 
C12 H12 P8C sing 285 n n 
C12 H13 P8C sing 286 n n 
C13 H14 P8C sing 287 n n 
C16 H15 P8C sing 288 n n 
C16 H16 P8C sing 289 n n 
C17 H17 P8C sing 290 n n 
C17 H18 P8C sing 291 n n 
C19 H19 P8C sing 292 n n 
C23 H20 P8C sing 293 n n 
C23 H21 P8C sing 294 n n 
C24 H22 P8C sing 295 n n 
C25 H23 P8C sing 296 n n 
C26 H24 P8C sing 297 n n 
C27 H25 P8C sing 298 n n 
C27 H26 P8C sing 299 n n 
C28 H27 P8C sing 300 n n 
C28 H28 P8C sing 301 n n 
C30 H29 P8C sing 302 n n 
C30 H30 P8C sing 303 n n 
C31 H31 P8C sing 304 n n 
C31 H32 P8C sing 305 n n 
C34 H33 P8C sing 306 n n 
C34 H34 P8C sing 307 n n 
N03 H35 P8C sing 308 n n 
N10 H36 P8C sing 309 n n 
N15 H37 P8C sing 310 n n 
O20 H38 P8C sing 311 n n 
S1 O1 P8C doub 312 n n 
S1 O2 P8C sing 313 n n 
S1 O3 P8C sing 314 n n 
O2 H39 P8C sing 315 n n 
O3 H40 P8C sing 316 n n 
#
_atom_sites.entry_id                     8CZV 
_atom_sites.fract_transf_matrix[1][1]    0.009855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004076 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017406 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021705 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 P8C A 1 401 1 P8C C25 . 
C 3 PJR A 1 402 2 PJR C25 . 
D 4 HOH A 1 501 54 HOH HOH . 
D 4 HOH A 2 502 64 HOH HOH . 
D 4 HOH A 3 503 13 HOH HOH . 
D 4 HOH A 4 504 19 HOH HOH . 
D 4 HOH A 5 505 65 HOH HOH . 
D 4 HOH A 6 506 14 HOH HOH . 
D 4 HOH A 7 507 7 HOH HOH . 
D 4 HOH A 8 508 30 HOH HOH . 
D 4 HOH A 9 509 49 HOH HOH . 
D 4 HOH A 10 510 37 HOH HOH . 
D 4 HOH A 11 511 28 HOH HOH . 
D 4 HOH A 12 512 78 HOH HOH . 
D 4 HOH A 13 513 52 HOH HOH . 
D 4 HOH A 14 514 5 HOH HOH . 
D 4 HOH A 15 515 39 HOH HOH . 
D 4 HOH A 16 516 63 HOH HOH . 
D 4 HOH A 17 517 17 HOH HOH . 
D 4 HOH A 18 518 62 HOH HOH . 
D 4 HOH A 19 519 26 HOH HOH . 
D 4 HOH A 20 520 6 HOH HOH . 
D 4 HOH A 21 521 27 HOH HOH . 
D 4 HOH A 22 522 47 HOH HOH . 
D 4 HOH A 23 523 44 HOH HOH . 
D 4 HOH A 24 524 31 HOH HOH . 
D 4 HOH A 25 525 68 HOH HOH . 
D 4 HOH A 26 526 8 HOH HOH . 
D 4 HOH A 27 527 81 HOH HOH . 
D 4 HOH A 28 528 35 HOH HOH . 
D 4 HOH A 29 529 77 HOH HOH . 
D 4 HOH A 30 530 40 HOH HOH . 
D 4 HOH A 31 531 11 HOH HOH . 
D 4 HOH A 32 532 16 HOH HOH . 
D 4 HOH A 33 533 36 HOH HOH . 
D 4 HOH A 34 534 32 HOH HOH . 
D 4 HOH A 35 535 1 HOH HOH . 
D 4 HOH A 36 536 80 HOH HOH . 
D 4 HOH A 37 537 2 HOH HOH . 
D 4 HOH A 38 538 24 HOH HOH . 
D 4 HOH A 39 539 20 HOH HOH . 
D 4 HOH A 40 540 83 HOH HOH . 
D 4 HOH A 41 541 82 HOH HOH . 
D 4 HOH A 42 542 85 HOH HOH . 
D 4 HOH A 43 543 12 HOH HOH . 
D 4 HOH A 44 544 33 HOH HOH . 
D 4 HOH A 45 545 15 HOH HOH . 
D 4 HOH A 46 546 38 HOH HOH . 
D 4 HOH A 47 547 66 HOH HOH . 
D 4 HOH A 48 548 45 HOH HOH . 
D 4 HOH A 49 549 50 HOH HOH . 
D 4 HOH A 50 550 59 HOH HOH . 
D 4 HOH A 51 551 55 HOH HOH . 
D 4 HOH A 52 552 9 HOH HOH . 
D 4 HOH A 53 553 29 HOH HOH . 
D 4 HOH A 54 554 23 HOH HOH . 
D 4 HOH A 55 555 21 HOH HOH . 
D 4 HOH A 56 556 42 HOH HOH . 
D 4 HOH A 57 557 46 HOH HOH . 
D 4 HOH A 58 558 10 HOH HOH . 
D 4 HOH A 59 559 57 HOH HOH . 
D 4 HOH A 60 560 34 HOH HOH . 
D 4 HOH A 61 561 67 HOH HOH . 
D 4 HOH A 62 562 18 HOH HOH . 
D 4 HOH A 63 563 60 HOH HOH . 
D 4 HOH A 64 564 79 HOH HOH . 
D 4 HOH A 65 565 48 HOH HOH . 
D 4 HOH A 66 566 41 HOH HOH . 
D 4 HOH A 67 567 22 HOH HOH . 
D 4 HOH A 68 568 43 HOH HOH . 
D 4 HOH A 69 569 51 HOH HOH . 
D 4 HOH A 70 570 84 HOH HOH . 
D 4 HOH A 71 571 3 HOH HOH . 
D 4 HOH A 72 572 61 HOH HOH . 
D 4 HOH A 73 573 53 HOH HOH . 
D 4 HOH A 74 574 76 HOH HOH . 
D 4 HOH A 75 575 75 HOH HOH . 
D 4 HOH A 76 576 56 HOH HOH . 
D 4 HOH A 77 577 73 HOH HOH . 
D 4 HOH A 78 578 86 HOH HOH . 
D 4 HOH A 79 579 71 HOH HOH . 
D 4 HOH A 80 580 72 HOH HOH . 
D 4 HOH A 81 581 70 HOH HOH . 
D 4 HOH A 82 582 74 HOH HOH . 
D 4 HOH A 83 583 69 HOH HOH . 
D 4 HOH A 84 584 25 HOH HOH . 
D 4 HOH A 85 585 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 P8C . A . B 2 -21.708 23.778 2.484 0.5 38.22 ? C02 P8C 401 A 1 
HETATM 2 C C04 P8C . A . B 2 -21.152 26.103 1.841 0.5 28.97 ? C04 P8C 401 A 1 
HETATM 3 C C05 P8C . A . B 2 -21.41 27.151 0.724 0.5 31.98 ? C05 P8C 401 A 1 
HETATM 4 C C06 P8C . A . B 2 -20.8 26.696 -0.634 0.5 32.98 ? C06 P8C 401 A 1 
HETATM 5 C C07 P8C . A . B 2 -19.269 26.518 -0.555 0.5 32.86 ? C07 P8C 401 A 1 
HETATM 6 C C08 P8C . A . B 2 -21.103 27.667 -1.779 0.5 28.56 ? C08 P8C 401 A 1 
HETATM 7 C C09 P8C . A . B 2 -21.673 26.624 3.225 0.5 33.66 ? C09 P8C 401 A 1 
HETATM 8 C C11 P8C . A . B 2 -21.206 27.751 5.396 0.5 30.64 ? C11 P8C 401 A 1 
HETATM 9 C C12 P8C . A . B 2 -20.529 26.898 6.528 0.5 24.07 ? C12 P8C 401 A 1 
HETATM 10 C C13 P8C . A . B 2 -20.972 25.401 6.489 0.5 23.04 ? C13 P8C 401 A 1 
HETATM 11 C C14 P8C . A . B 2 -20.337 24.567 7.635 0.5 29.59 ? C14 P8C 401 A 1 
HETATM 12 C C16 P8C . A . B 2 -22.682 24.07 7.705 0.5 32.04 ? C16 P8C 401 A 1 
HETATM 13 C C17 P8C . A . B 2 -22.499 25.273 6.752 0.5 24.37 ? C17 P8C 401 A 1 
HETATM 14 C C19 P8C . A . B 2 -20.764 29.225 5.521 0.5 29.54 ? C19 P8C 401 A 1 
HETATM 15 C C23 P8C . A . B 2 -22.649 21.768 3.292 0.5 38.42 ? C23 P8C 401 A 1 
HETATM 16 C C24 P8C . A . B 2 -22.211 20.369 2.888 0.5 43.21 ? C24 P8C 401 A 1 
HETATM 17 C C25 P8C . A . B 2 -23.312 19.325 2.702 0.5 44.94 ? C25 P8C 401 A 1 
HETATM 18 C C26 P8C . A . B 2 -23.42 18.36 1.538 0.5 46.17 ? C26 P8C 401 A 1 
HETATM 19 C C27 P8C . A . B 2 -22.831 16.967 1.613 0.5 39.87 ? C27 P8C 401 A 1 
HETATM 20 C C28 P8C . A . B 2 -23.493 16.072 0.604 0.5 50.89 ? C28 P8C 401 A 1 
HETATM 21 C C29 P8C . A . B 2 -23.221 16.615 -0.824 0.5 48.76 ? C29 P8C 401 A 1 
HETATM 22 C C30 P8C . A . B 2 -23.523 18.148 -0.965 0.5 43.91 ? C30 P8C 401 A 1 
HETATM 23 C C31 P8C . A . B 2 -22.927 18.94 0.198 0.5 43.18 ? C31 P8C 401 A 1 
HETATM 24 C C34 P8C . A . B 2 -22.378 19.224 3.862 0.5 43.54 ? C34 P8C 401 A 1 
HETATM 25 F F32 P8C . A . B 2 -21.947 16.356 -1.157 0.5 47.48 ? F32 P8C 401 A 1 
HETATM 26 F F33 P8C . A . B 2 -23.929 15.898 -1.735 0.5 48.93 ? F33 P8C 401 A 1 
HETATM 27 N N03 P8C . A . B 2 -21.785 24.814 1.566 0.5 31.46 ? N03 P8C 401 A 1 
HETATM 28 N N10 P8C . A . B 2 -20.805 27.255 4.09 0.5 28.95 ? N10 P8C 401 A 1 
HETATM 29 N N15 P8C . A . B 2 -21.351 23.842 8.279 0.5 30.59 ? N15 P8C 401 A 1 
HETATM 30 O O01 P8C . A . B 2 -20.95 23.776 3.445 0.5 35.21 ? O01 P8C 401 A 1 
HETATM 31 O O18 P8C . A . B 2 -19.171 24.5 7.95 0.5 25.02 ? O18 P8C 401 A 1 
HETATM 32 O O20 P8C . A . B 2 -21.479 29.941 4.539 0.5 25.02 ? O20 P8C 401 A 1 
HETATM 33 O O21 P8C . A . B 2 -22.835 26.459 3.564 0.5 32.28 ? O21 P8C 401 A 1 
HETATM 34 O O22 P8C . A . B 2 -22.544 22.719 2.256 0.5 36.15 ? O22 P8C 401 A 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           34 
#