data_8CZV
#
_model_server_result.job_id            cJHessItGVlG5NdMWlAB1g 
_model_server_result.datetime_utc      '2024-11-16 10:05:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8czv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    8CZV 
#
_exptl.entry_id    8CZV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              568.652 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(1~{S},2~{R})-2-[4,4-bis(fluoranyl)cyclohexyl]cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.47 
_cell.angle_gamma         90 
_cell.entry_id            8CZV 
_cell.length_a            101.47 
_cell.length_b            57.45 
_cell.length_c            49.858 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CZV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -19.05571 0 46.07277 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 155 A CYS 148 1_555 B C19 P8C . A P8C 401 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.794 ? 
covale ? covale2 A SG CYS 155 A CYS 148 1_555 C C19 PJR . A PJR 402 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.765 ? 
#
_chem_comp.formula           'C24 H40 F2 N3 O8 S 1' 
_chem_comp.formula_weight    568.652 
_chem_comp.id                PJR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(1~{S},2~{R})-2-[4,4-bis(fluoranyl)cyclohexyl]cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C08 C06 PJR sing 340 n n 
F33 C29 PJR sing 341 n n 
F32 C29 PJR sing 342 n n 
C30 C29 PJR sing 343 n n 
C30 C31 PJR sing 344 n n 
C29 C28 PJR sing 345 n n 
C06 C07 PJR sing 346 n n 
C06 C05 PJR sing 347 n n 
C31 C26 PJR sing 348 n n 
C28 C27 PJR sing 349 n n 
C05 C04 PJR sing 350 n n 
C26 C27 PJR sing 351 n n 
C26 C25 PJR sing 352 n n 
N03 C04 PJR sing 353 n n 
N03 C02 PJR sing 354 n n 
C04 C09 PJR sing 355 n n 
O22 C02 PJR sing 356 n n 
O22 C23 PJR sing 357 n n 
C02 O01 PJR doub 358 n n 
C25 C24 PJR sing 359 n n 
C25 C34 PJR sing 360 n n 
C24 C23 PJR sing 361 n n 
C24 C34 PJR sing 362 n n 
C09 O21 PJR doub 363 n n 
C09 N10 PJR sing 364 n n 
N10 C11 PJR sing 365 n n 
S1 C19 PJR sing 366 n n 
C19 C11 PJR sing 367 n n 
C19 O20 PJR sing 368 n n 
C11 C12 PJR sing 369 n n 
C12 C13 PJR sing 370 n n 
C13 C17 PJR sing 371 n n 
C13 C14 PJR sing 372 n n 
C17 C16 PJR sing 373 n n 
C14 O18 PJR doub 374 n n 
C14 N15 PJR sing 375 n n 
C16 N15 PJR sing 376 n n 
C04 H1 PJR sing 377 n n 
C05 H2 PJR sing 378 n n 
C05 H3 PJR sing 379 n n 
C06 H4 PJR sing 380 n n 
C07 H5 PJR sing 381 n n 
C07 H6 PJR sing 382 n n 
C07 H7 PJR sing 383 n n 
C08 H8 PJR sing 384 n n 
C08 H9 PJR sing 385 n n 
C08 H10 PJR sing 386 n n 
C11 H11 PJR sing 387 n n 
C12 H12 PJR sing 388 n n 
C12 H13 PJR sing 389 n n 
C13 H14 PJR sing 390 n n 
C16 H15 PJR sing 391 n n 
C16 H16 PJR sing 392 n n 
C17 H17 PJR sing 393 n n 
C17 H18 PJR sing 394 n n 
C19 H19 PJR sing 395 n n 
C23 H20 PJR sing 396 n n 
C23 H21 PJR sing 397 n n 
C24 H22 PJR sing 398 n n 
C25 H23 PJR sing 399 n n 
C26 H24 PJR sing 400 n n 
C27 H25 PJR sing 401 n n 
C27 H26 PJR sing 402 n n 
C28 H27 PJR sing 403 n n 
C28 H28 PJR sing 404 n n 
C30 H29 PJR sing 405 n n 
C30 H30 PJR sing 406 n n 
C31 H31 PJR sing 407 n n 
C31 H32 PJR sing 408 n n 
C34 H33 PJR sing 409 n n 
C34 H34 PJR sing 410 n n 
N03 H35 PJR sing 411 n n 
N10 H36 PJR sing 412 n n 
N15 H37 PJR sing 413 n n 
O20 H38 PJR sing 414 n n 
S1 O1 PJR sing 415 n n 
S1 O2 PJR sing 416 n n 
S1 O3 PJR doub 417 n n 
O1 H39 PJR sing 418 n n 
O2 H40 PJR sing 419 n n 
#
_atom_sites.entry_id                     8CZV 
_atom_sites.fract_transf_matrix[1][1]    0.009855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004076 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017406 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021705 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 P8C A 1 401 1 P8C C25 . 
C 3 PJR A 1 402 2 PJR C25 . 
D 4 HOH A 1 501 54 HOH HOH . 
D 4 HOH A 2 502 64 HOH HOH . 
D 4 HOH A 3 503 13 HOH HOH . 
D 4 HOH A 4 504 19 HOH HOH . 
D 4 HOH A 5 505 65 HOH HOH . 
D 4 HOH A 6 506 14 HOH HOH . 
D 4 HOH A 7 507 7 HOH HOH . 
D 4 HOH A 8 508 30 HOH HOH . 
D 4 HOH A 9 509 49 HOH HOH . 
D 4 HOH A 10 510 37 HOH HOH . 
D 4 HOH A 11 511 28 HOH HOH . 
D 4 HOH A 12 512 78 HOH HOH . 
D 4 HOH A 13 513 52 HOH HOH . 
D 4 HOH A 14 514 5 HOH HOH . 
D 4 HOH A 15 515 39 HOH HOH . 
D 4 HOH A 16 516 63 HOH HOH . 
D 4 HOH A 17 517 17 HOH HOH . 
D 4 HOH A 18 518 62 HOH HOH . 
D 4 HOH A 19 519 26 HOH HOH . 
D 4 HOH A 20 520 6 HOH HOH . 
D 4 HOH A 21 521 27 HOH HOH . 
D 4 HOH A 22 522 47 HOH HOH . 
D 4 HOH A 23 523 44 HOH HOH . 
D 4 HOH A 24 524 31 HOH HOH . 
D 4 HOH A 25 525 68 HOH HOH . 
D 4 HOH A 26 526 8 HOH HOH . 
D 4 HOH A 27 527 81 HOH HOH . 
D 4 HOH A 28 528 35 HOH HOH . 
D 4 HOH A 29 529 77 HOH HOH . 
D 4 HOH A 30 530 40 HOH HOH . 
D 4 HOH A 31 531 11 HOH HOH . 
D 4 HOH A 32 532 16 HOH HOH . 
D 4 HOH A 33 533 36 HOH HOH . 
D 4 HOH A 34 534 32 HOH HOH . 
D 4 HOH A 35 535 1 HOH HOH . 
D 4 HOH A 36 536 80 HOH HOH . 
D 4 HOH A 37 537 2 HOH HOH . 
D 4 HOH A 38 538 24 HOH HOH . 
D 4 HOH A 39 539 20 HOH HOH . 
D 4 HOH A 40 540 83 HOH HOH . 
D 4 HOH A 41 541 82 HOH HOH . 
D 4 HOH A 42 542 85 HOH HOH . 
D 4 HOH A 43 543 12 HOH HOH . 
D 4 HOH A 44 544 33 HOH HOH . 
D 4 HOH A 45 545 15 HOH HOH . 
D 4 HOH A 46 546 38 HOH HOH . 
D 4 HOH A 47 547 66 HOH HOH . 
D 4 HOH A 48 548 45 HOH HOH . 
D 4 HOH A 49 549 50 HOH HOH . 
D 4 HOH A 50 550 59 HOH HOH . 
D 4 HOH A 51 551 55 HOH HOH . 
D 4 HOH A 52 552 9 HOH HOH . 
D 4 HOH A 53 553 29 HOH HOH . 
D 4 HOH A 54 554 23 HOH HOH . 
D 4 HOH A 55 555 21 HOH HOH . 
D 4 HOH A 56 556 42 HOH HOH . 
D 4 HOH A 57 557 46 HOH HOH . 
D 4 HOH A 58 558 10 HOH HOH . 
D 4 HOH A 59 559 57 HOH HOH . 
D 4 HOH A 60 560 34 HOH HOH . 
D 4 HOH A 61 561 67 HOH HOH . 
D 4 HOH A 62 562 18 HOH HOH . 
D 4 HOH A 63 563 60 HOH HOH . 
D 4 HOH A 64 564 79 HOH HOH . 
D 4 HOH A 65 565 48 HOH HOH . 
D 4 HOH A 66 566 41 HOH HOH . 
D 4 HOH A 67 567 22 HOH HOH . 
D 4 HOH A 68 568 43 HOH HOH . 
D 4 HOH A 69 569 51 HOH HOH . 
D 4 HOH A 70 570 84 HOH HOH . 
D 4 HOH A 71 571 3 HOH HOH . 
D 4 HOH A 72 572 61 HOH HOH . 
D 4 HOH A 73 573 53 HOH HOH . 
D 4 HOH A 74 574 76 HOH HOH . 
D 4 HOH A 75 575 75 HOH HOH . 
D 4 HOH A 76 576 56 HOH HOH . 
D 4 HOH A 77 577 73 HOH HOH . 
D 4 HOH A 78 578 86 HOH HOH . 
D 4 HOH A 79 579 71 HOH HOH . 
D 4 HOH A 80 580 72 HOH HOH . 
D 4 HOH A 81 581 70 HOH HOH . 
D 4 HOH A 82 582 74 HOH HOH . 
D 4 HOH A 83 583 69 HOH HOH . 
D 4 HOH A 84 584 25 HOH HOH . 
D 4 HOH A 85 585 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 PJR . B . C 3 -21.725 23.687 2.502 0.5 38.24 ? C02 PJR 402 A 1 
HETATM 2 C C04 PJR . B . C 3 -21.222 25.993 1.724 0.5 29.05 ? C04 PJR 402 A 1 
HETATM 3 C C05 PJR . B . C 3 -21.481 26.965 0.541 0.5 32.35 ? C05 PJR 402 A 1 
HETATM 4 C C06 PJR . B . C 3 -20.716 26.561 -0.745 0.5 32.97 ? C06 PJR 402 A 1 
HETATM 5 C C07 PJR . B . C 3 -19.19 26.491 -0.521 0.5 32.82 ? C07 PJR 402 A 1 
HETATM 6 C C08 PJR . B . C 3 -20.969 27.537 -1.896 0.5 28.47 ? C08 PJR 402 A 1 
HETATM 7 C C09 PJR . B . C 3 -21.741 26.636 3.053 0.5 33.71 ? C09 PJR 402 A 1 
HETATM 8 C C11 PJR . B . C 3 -21.241 27.798 5.193 0.5 30.64 ? C11 PJR 402 A 1 
HETATM 9 C C12 PJR . B . C 3 -20.583 27.032 6.399 0.5 24.13 ? C12 PJR 402 A 1 
HETATM 10 C C13 PJR . B . C 3 -21.034 25.54 6.449 0.5 23.04 ? C13 PJR 402 A 1 
HETATM 11 C C14 PJR . B . C 3 -20.393 24.756 7.622 0.5 29.62 ? C14 PJR 402 A 1 
HETATM 12 C C16 PJR . B . C 3 -22.716 24.173 7.629 0.5 31.97 ? C16 PJR 402 A 1 
HETATM 13 C C17 PJR . B . C 3 -22.553 25.434 6.754 0.5 24.23 ? C17 PJR 402 A 1 
HETATM 14 C C19 PJR . B . C 3 -20.781 29.275 5.186 0.5 29.61 ? C19 PJR 402 A 1 
HETATM 15 C C23 PJR . B . C 3 -22.569 21.678 3.408 0.5 38.56 ? C23 PJR 402 A 1 
HETATM 16 C C24 PJR . B . C 3 -22.252 20.239 3.023 0.5 43.43 ? C24 PJR 402 A 1 
HETATM 17 C C25 PJR . B . C 3 -23.434 19.339 2.652 0.5 45.05 ? C25 PJR 402 A 1 
HETATM 18 C C26 PJR . B . C 3 -23.493 18.388 1.47 0.5 46.19 ? C26 PJR 402 A 1 
HETATM 19 C C27 PJR . B . C 3 -22.995 16.962 1.589 0.5 40.01 ? C27 PJR 402 A 1 
HETATM 20 C C28 PJR . B . C 3 -23.615 16.106 0.52 0.5 50.88 ? C28 PJR 402 A 1 
HETATM 21 C C29 PJR . B . C 3 -23.176 16.627 -0.873 0.5 48.77 ? C29 PJR 402 A 1 
HETATM 22 C C30 PJR . B . C 3 -23.379 18.176 -1.037 0.5 43.96 ? C30 PJR 402 A 1 
HETATM 23 C C31 PJR . B . C 3 -22.855 18.942 0.18 0.5 43.14 ? C31 PJR 402 A 1 
HETATM 24 C C34 PJR . B . C 3 -22.696 19.114 3.931 0.5 42.32 ? C34 PJR 402 A 1 
HETATM 25 F F32 PJR . B . C 3 -21.89 16.295 -1.085 0.5 47.47 ? F32 PJR 402 A 1 
HETATM 26 F F33 PJR . B . C 3 -23.833 15.947 -1.849 0.5 49.03 ? F33 PJR 402 A 1 
HETATM 27 N N03 PJR . B . C 3 -21.863 24.685 1.548 0.5 31.45 ? N03 PJR 402 A 1 
HETATM 28 N N10 PJR . B . C 3 -20.842 27.189 3.941 0.5 29.15 ? N10 PJR 402 A 1 
HETATM 29 N N15 PJR . B . C 3 -21.396 24 8.251 0.5 30.75 ? N15 PJR 402 A 1 
HETATM 30 O O01 PJR . B . C 3 -20.953 23.754 3.449 0.5 35.21 ? O01 PJR 402 A 1 
HETATM 31 O O18 PJR . B . C 3 -19.235 24.747 7.97 0.5 25.19 ? O18 PJR 402 A 1 
HETATM 32 O O20 PJR . B . C 3 -21.238 29.887 6.353 0.5 28.46 ? O20 PJR 402 A 1 
HETATM 33 O O21 PJR . B . C 3 -22.93 26.651 3.328 0.5 32.62 ? O21 PJR 402 A 1 
HETATM 34 O O22 PJR . B . C 3 -22.516 22.583 2.328 0.5 36.17 ? O22 PJR 402 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           34 
#