data_8D0O # _model_server_result.job_id QFuVrkGC_vh6KFCpki4kXA _model_server_result.datetime_utc '2024-12-01 05:46:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":413}' # _entry.id 8D0O # _exptl.entry_id 8D0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8D0O _cell.length_a 127.12 _cell.length_b 127.12 _cell.length_c 127.12 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 14_665 -x+1,-y+3/2,z -1 0 0 0 -1 0 0 0 1 127.12 190.68 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 400 NAG 2 n B NAG 2 B 2 NAG A 401 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 82 1_555 A SG CYS 298 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 54 A CYS 91 1_555 A SG CYS 301 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf3 A SG CYS 153 A CYS 190 1_555 A SG CYS 201 A CYS 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? covale ? covale1 A ND2 ASN 116 A ASN 153 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8D0O _atom_sites.fract_transf_matrix[1][1] 0.007867 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IOD A 1 401 500 IOD IOD . D 3 IOD A 1 402 501 IOD IOD . E 3 IOD A 1 403 502 IOD IOD . F 3 IOD A 1 404 503 IOD IOD . G 3 IOD A 1 405 504 IOD IOD . H 3 IOD A 1 406 505 IOD IOD . I 3 IOD A 1 407 506 IOD IOD . J 3 IOD A 1 408 507 IOD IOD . K 3 IOD A 1 409 508 IOD IOD . L 3 IOD A 1 410 509 IOD IOD . M 3 IOD A 1 411 510 IOD IOD . N 3 IOD A 1 412 511 IOD IOD . O 3 IOD A 1 413 512 IOD IOD . P 3 IOD A 1 414 513 IOD IOD . Q 4 CS A 1 415 600 CS Cs . R 4 CS A 1 416 601 CS Cs . S 4 CS A 1 417 602 CS Cs . T 4 CS A 1 418 603 CS Cs . U 4 CS A 1 419 604 CS Cs . V 4 CS A 1 420 605 CS Cs . W 4 CS A 1 421 606 CS Cs . X 4 CS A 1 422 607 CS Cs . Y 4 CS A 1 423 608 CS Cs . Z 5 HOH A 1 501 159 HOH HOH . Z 5 HOH A 2 502 111 HOH HOH . Z 5 HOH A 3 503 109 HOH HOH . Z 5 HOH A 4 504 136 HOH HOH . Z 5 HOH A 5 505 78 HOH HOH . Z 5 HOH A 6 506 22 HOH HOH . Z 5 HOH A 7 507 58 HOH HOH . Z 5 HOH A 8 508 172 HOH HOH . Z 5 HOH A 9 509 21 HOH HOH . Z 5 HOH A 10 510 24 HOH HOH . Z 5 HOH A 11 511 45 HOH HOH . Z 5 HOH A 12 512 113 HOH HOH . Z 5 HOH A 13 513 215 HOH HOH . Z 5 HOH A 14 514 87 HOH HOH . Z 5 HOH A 15 515 1 HOH HOH . Z 5 HOH A 16 516 56 HOH HOH . Z 5 HOH A 17 517 135 HOH HOH . Z 5 HOH A 18 518 48 HOH HOH . Z 5 HOH A 19 519 103 HOH HOH . Z 5 HOH A 20 520 83 HOH HOH . Z 5 HOH A 21 521 18 HOH HOH . Z 5 HOH A 22 522 20 HOH HOH . Z 5 HOH A 23 523 123 HOH HOH . Z 5 HOH A 24 524 41 HOH HOH . Z 5 HOH A 25 525 16 HOH HOH . Z 5 HOH A 26 526 203 HOH HOH . Z 5 HOH A 27 527 92 HOH HOH . Z 5 HOH A 28 528 163 HOH HOH . Z 5 HOH A 29 529 149 HOH HOH . Z 5 HOH A 30 530 75 HOH HOH . Z 5 HOH A 31 531 25 HOH HOH . Z 5 HOH A 32 532 101 HOH HOH . Z 5 HOH A 33 533 43 HOH HOH . Z 5 HOH A 34 534 89 HOH HOH . Z 5 HOH A 35 535 52 HOH HOH . Z 5 HOH A 36 536 31 HOH HOH . Z 5 HOH A 37 537 9 HOH HOH . Z 5 HOH A 38 538 197 HOH HOH . Z 5 HOH A 39 539 84 HOH HOH . Z 5 HOH A 40 540 153 HOH HOH . Z 5 HOH A 41 541 44 HOH HOH . Z 5 HOH A 42 542 3 HOH HOH . Z 5 HOH A 43 543 76 HOH HOH . Z 5 HOH A 44 544 4 HOH HOH . Z 5 HOH A 45 545 30 HOH HOH . Z 5 HOH A 46 546 88 HOH HOH . Z 5 HOH A 47 547 28 HOH HOH . Z 5 HOH A 48 548 10 HOH HOH . Z 5 HOH A 49 549 8 HOH HOH . Z 5 HOH A 50 550 189 HOH HOH . Z 5 HOH A 51 551 106 HOH HOH . Z 5 HOH A 52 552 140 HOH HOH . Z 5 HOH A 53 553 2 HOH HOH . Z 5 HOH A 54 554 27 HOH HOH . Z 5 HOH A 55 555 62 HOH HOH . Z 5 HOH A 56 556 192 HOH HOH . Z 5 HOH A 57 557 174 HOH HOH . Z 5 HOH A 58 558 33 HOH HOH . Z 5 HOH A 59 559 118 HOH HOH . Z 5 HOH A 60 560 194 HOH HOH . Z 5 HOH A 61 561 185 HOH HOH . Z 5 HOH A 62 562 7 HOH HOH . Z 5 HOH A 63 563 13 HOH HOH . Z 5 HOH A 64 564 12 HOH HOH . Z 5 HOH A 65 565 36 HOH HOH . Z 5 HOH A 66 566 63 HOH HOH . Z 5 HOH A 67 567 37 HOH HOH . Z 5 HOH A 68 568 53 HOH HOH . Z 5 HOH A 69 569 166 HOH HOH . Z 5 HOH A 70 570 94 HOH HOH . Z 5 HOH A 71 571 125 HOH HOH . Z 5 HOH A 72 572 19 HOH HOH . Z 5 HOH A 73 573 131 HOH HOH . Z 5 HOH A 74 574 50 HOH HOH . Z 5 HOH A 75 575 66 HOH HOH . Z 5 HOH A 76 576 180 HOH HOH . Z 5 HOH A 77 577 91 HOH HOH . Z 5 HOH A 78 578 72 HOH HOH . Z 5 HOH A 79 579 51 HOH HOH . Z 5 HOH A 80 580 39 HOH HOH . Z 5 HOH A 81 581 68 HOH HOH . Z 5 HOH A 82 582 196 HOH HOH . Z 5 HOH A 83 583 26 HOH HOH . Z 5 HOH A 84 584 77 HOH HOH . Z 5 HOH A 85 585 65 HOH HOH . Z 5 HOH A 86 586 49 HOH HOH . Z 5 HOH A 87 587 81 HOH HOH . Z 5 HOH A 88 588 147 HOH HOH . Z 5 HOH A 89 589 122 HOH HOH . Z 5 HOH A 90 590 90 HOH HOH . Z 5 HOH A 91 591 42 HOH HOH . Z 5 HOH A 92 592 104 HOH HOH . Z 5 HOH A 93 593 85 HOH HOH . Z 5 HOH A 94 594 139 HOH HOH . Z 5 HOH A 95 595 46 HOH HOH . Z 5 HOH A 96 596 17 HOH HOH . Z 5 HOH A 97 597 61 HOH HOH . Z 5 HOH A 98 598 100 HOH HOH . Z 5 HOH A 99 599 38 HOH HOH . Z 5 HOH A 100 600 67 HOH HOH . Z 5 HOH A 101 601 158 HOH HOH . Z 5 HOH A 102 602 86 HOH HOH . Z 5 HOH A 103 603 169 HOH HOH . Z 5 HOH A 104 604 107 HOH HOH . Z 5 HOH A 105 605 23 HOH HOH . Z 5 HOH A 106 606 157 HOH HOH . Z 5 HOH A 107 607 168 HOH HOH . Z 5 HOH A 108 608 126 HOH HOH . Z 5 HOH A 109 609 59 HOH HOH . Z 5 HOH A 110 610 187 HOH HOH . Z 5 HOH A 111 611 116 HOH HOH . Z 5 HOH A 112 612 54 HOH HOH . Z 5 HOH A 113 613 98 HOH HOH . Z 5 HOH A 114 614 167 HOH HOH . Z 5 HOH A 115 615 124 HOH HOH . Z 5 HOH A 116 616 121 HOH HOH . Z 5 HOH A 117 617 29 HOH HOH . Z 5 HOH A 118 618 40 HOH HOH . Z 5 HOH A 119 619 32 HOH HOH . Z 5 HOH A 120 620 97 HOH HOH . Z 5 HOH A 121 621 128 HOH HOH . Z 5 HOH A 122 622 115 HOH HOH . Z 5 HOH A 123 623 110 HOH HOH . Z 5 HOH A 124 624 95 HOH HOH . Z 5 HOH A 125 625 60 HOH HOH . Z 5 HOH A 126 626 34 HOH HOH . Z 5 HOH A 127 627 138 HOH HOH . Z 5 HOH A 128 628 165 HOH HOH . Z 5 HOH A 129 629 55 HOH HOH . Z 5 HOH A 130 630 179 HOH HOH . Z 5 HOH A 131 631 130 HOH HOH . Z 5 HOH A 132 632 82 HOH HOH . Z 5 HOH A 133 633 143 HOH HOH . Z 5 HOH A 134 634 108 HOH HOH . Z 5 HOH A 135 635 57 HOH HOH . Z 5 HOH A 136 636 64 HOH HOH . Z 5 HOH A 137 637 79 HOH HOH . Z 5 HOH A 138 638 178 HOH HOH . Z 5 HOH A 139 639 112 HOH HOH . Z 5 HOH A 140 640 96 HOH HOH . Z 5 HOH A 141 641 119 HOH HOH . Z 5 HOH A 142 642 93 HOH HOH . Z 5 HOH A 143 643 35 HOH HOH . Z 5 HOH A 144 644 5 HOH HOH . Z 5 HOH A 145 645 132 HOH HOH . Z 5 HOH A 146 646 99 HOH HOH . Z 5 HOH A 147 647 47 HOH HOH . Z 5 HOH A 148 648 171 HOH HOH . Z 5 HOH A 149 649 133 HOH HOH . Z 5 HOH A 150 650 141 HOH HOH . Z 5 HOH A 151 651 70 HOH HOH . Z 5 HOH A 152 652 6 HOH HOH . Z 5 HOH A 153 653 102 HOH HOH . Z 5 HOH A 154 654 15 HOH HOH . Z 5 HOH A 155 655 117 HOH HOH . Z 5 HOH A 156 656 127 HOH HOH . Z 5 HOH A 157 657 207 HOH HOH . Z 5 HOH A 158 658 71 HOH HOH . Z 5 HOH A 159 659 137 HOH HOH . Z 5 HOH A 160 660 144 HOH HOH . Z 5 HOH A 161 661 191 HOH HOH . Z 5 HOH A 162 662 161 HOH HOH . Z 5 HOH A 163 663 176 HOH HOH . Z 5 HOH A 164 664 170 HOH HOH . Z 5 HOH A 165 665 150 HOH HOH . Z 5 HOH A 166 666 205 HOH HOH . Z 5 HOH A 167 667 145 HOH HOH . Z 5 HOH A 168 668 154 HOH HOH . Z 5 HOH A 169 669 14 HOH HOH . Z 5 HOH A 170 670 120 HOH HOH . Z 5 HOH A 171 671 182 HOH HOH . Z 5 HOH A 172 672 204 HOH HOH . Z 5 HOH A 173 673 200 HOH HOH . Z 5 HOH A 174 674 211 HOH HOH . Z 5 HOH A 175 675 183 HOH HOH . Z 5 HOH A 176 676 177 HOH HOH . Z 5 HOH A 177 677 175 HOH HOH . Z 5 HOH A 178 678 129 HOH HOH . Z 5 HOH A 179 679 73 HOH HOH . Z 5 HOH A 180 680 134 HOH HOH . Z 5 HOH A 181 681 208 HOH HOH . Z 5 HOH A 182 682 206 HOH HOH . Z 5 HOH A 183 683 199 HOH HOH . Z 5 HOH A 184 684 198 HOH HOH . Z 5 HOH A 185 685 11 HOH HOH . Z 5 HOH A 186 686 195 HOH HOH . Z 5 HOH A 187 687 212 HOH HOH . Z 5 HOH A 188 688 193 HOH HOH . Z 5 HOH A 189 689 217 HOH HOH . Z 5 HOH A 190 690 151 HOH HOH . Z 5 HOH A 191 691 105 HOH HOH . Z 5 HOH A 192 692 80 HOH HOH . Z 5 HOH A 193 693 114 HOH HOH . Z 5 HOH A 194 694 186 HOH HOH . Z 5 HOH A 195 695 152 HOH HOH . Z 5 HOH A 196 696 201 HOH HOH . Z 5 HOH A 197 697 69 HOH HOH . Z 5 HOH A 198 698 162 HOH HOH . Z 5 HOH A 199 699 214 HOH HOH . Z 5 HOH A 200 700 216 HOH HOH . Z 5 HOH A 201 701 188 HOH HOH . Z 5 HOH A 202 702 190 HOH HOH . Z 5 HOH A 203 703 142 HOH HOH . Z 5 HOH A 204 704 209 HOH HOH . Z 5 HOH A 205 705 202 HOH HOH . Z 5 HOH A 206 706 74 HOH HOH . Z 5 HOH A 207 707 181 HOH HOH . Z 5 HOH A 208 708 156 HOH HOH . Z 5 HOH A 209 709 160 HOH HOH . Z 5 HOH A 210 710 146 HOH HOH . Z 5 HOH A 211 711 173 HOH HOH . Z 5 HOH A 212 712 148 HOH HOH . Z 5 HOH A 213 713 210 HOH HOH . Z 5 HOH A 214 714 184 HOH HOH . Z 5 HOH A 215 715 164 HOH HOH . Z 5 HOH A 216 716 213 HOH HOH . Z 5 HOH A 217 717 155 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 3 _atom_site.Cartn_x 84.067 _atom_site.Cartn_y 102.997 _atom_site.Cartn_z 55.07 _atom_site.occupancy 0.2 _atom_site.B_iso_or_equiv 28.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 413 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #