data_8D0Z # _model_server_result.job_id 9aSXkr2ou2you0LgjAR5JQ _model_server_result.datetime_utc '2024-11-21 09:05:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d0z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1304}' # _entry.id 8D0Z # _exptl.entry_id 8D0Z _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8D0Z _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D0Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 131 C CYS 131 1_555 A SG CYS 166 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 291 C CYS 291 1_555 A SG CYS 301 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 538 C CYS 538 1_555 A SG CYS 590 C CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 617 C CYS 617 1_555 A SG CYS 649 C CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 662 C CYS 662 1_555 A SG CYS 671 C CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 A SG CYS 705 C CYS 705 1_555 B SG CYS 883 A CYS 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf7 A SG CYS 738 C CYS 738 1_555 A SG CYS 760 C CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf8 A SG CYS 743 C CYS 743 1_555 A SG CYS 749 C CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 A SG CYS 883 C CYS 883 1_555 C SG CYS 705 B CYS 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf10 A SG CYS 1082 C CYS 1082 1_555 A SG CYS 1126 C CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf11 B SG CYS 131 A CYS 131 1_555 B SG CYS 166 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf12 B SG CYS 291 A CYS 291 1_555 B SG CYS 301 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf13 B SG CYS 336 A CYS 336 1_555 B SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 B SG CYS 379 A CYS 379 1_555 B SG CYS 432 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf15 B SG CYS 391 A CYS 391 1_555 B SG CYS 525 A CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf16 B SG CYS 480 A CYS 480 1_555 B SG CYS 488 A CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf17 B SG CYS 538 A CYS 538 1_555 B SG CYS 590 A CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf18 B SG CYS 617 A CYS 617 1_555 B SG CYS 649 A CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf19 B SG CYS 662 A CYS 662 1_555 B SG CYS 671 A CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf20 B SG CYS 705 A CYS 705 1_555 C SG CYS 883 B CYS 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf21 B SG CYS 738 A CYS 738 1_555 B SG CYS 760 A CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf22 B SG CYS 1032 A CYS 1032 1_555 B SG CYS 1043 A CYS 1043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf23 B SG CYS 1082 A CYS 1082 1_555 B SG CYS 1126 A CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf24 C SG CYS 131 B CYS 131 1_555 C SG CYS 166 B CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf25 C SG CYS 291 B CYS 291 1_555 C SG CYS 301 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf26 C SG CYS 538 B CYS 538 1_555 C SG CYS 590 B CYS 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf27 C SG CYS 617 B CYS 617 1_555 C SG CYS 649 B CYS 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf28 C SG CYS 662 B CYS 662 1_555 C SG CYS 671 B CYS 671 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf29 C SG CYS 738 B CYS 738 1_555 C SG CYS 760 B CYS 760 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf30 C SG CYS 743 B CYS 743 1_555 C SG CYS 749 B CYS 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf31 C SG CYS 1082 B CYS 1082 1_555 C SG CYS 1126 B CYS 1126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf32 D SG CYS 22 H CYS 22 1_555 D SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf33 E SG CYS 20 L CYS 23 1_555 E SG CYS 85 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A ND2 ASN 717 C ASN 717 1_555 F C1 NAG . C NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale2 A ND2 ASN 801 C ASN 801 1_555 G C1 NAG . C NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.523 ? covale ? covale3 A ND2 ASN 1134 C ASN 1134 1_555 H C1 NAG . C NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.528 ? covale ? covale4 B ND2 ASN 331 A ASN 331 1_555 I C1 NAG . A NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.519 ? covale ? covale5 B ND2 ASN 343 A ASN 343 1_555 J C1 NAG . A NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.52 ? covale ? covale6 B ND2 ASN 717 A ASN 717 1_555 L C1 NAG . A NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale7 B ND2 ASN 801 A ASN 801 1_555 K C1 NAG . A NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.526 ? covale ? covale8 C ND2 ASN 331 B ASN 331 1_555 P C1 NAG . B NAG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.531 ? covale ? covale9 C ND2 ASN 717 B ASN 717 1_555 M C1 NAG . B NAG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.524 ? covale ? covale10 C ND2 ASN 801 B ASN 801 1_555 N C1 NAG . B NAG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.527 ? covale ? covale11 C ND2 ASN 1098 B ASN 1098 1_555 O C1 NAG . B NAG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.539 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8D0Z _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 NAG C 1 1301 1148 NAG NAG . G 4 NAG C 1 1302 1149 NAG NAG . H 4 NAG C 1 1303 1151 NAG NAG . I 4 NAG A 1 1301 1533 NAG NAG . J 4 NAG A 1 1302 1534 NAG NAG . K 4 NAG A 1 1303 1535 NAG NAG . L 4 NAG A 1 1304 1537 NAG NAG . M 4 NAG B 1 1301 1148 NAG NAG . N 4 NAG B 1 1302 1149 NAG NAG . O 4 NAG B 1 1303 1150 NAG NAG . P 4 NAG B 1 1304 1151 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . P 4 247.976 187.64 237.723 1 71.06 ? C1 NAG 1304 B 1 HETATM 2 C C2 NAG . . . P 4 249.311 187.867 236.862 1 71.06 ? C2 NAG 1304 B 1 HETATM 3 C C3 NAG . . . P 4 249.222 186.993 235.558 1 71.06 ? C3 NAG 1304 B 1 HETATM 4 C C4 NAG . . . P 4 249.041 185.483 235.939 1 71.06 ? C4 NAG 1304 B 1 HETATM 5 C C5 NAG . . . P 4 247.736 185.328 236.802 1 71.06 ? C5 NAG 1304 B 1 HETATM 6 C C6 NAG . . . P 4 247.509 183.895 237.289 1 71.06 ? C6 NAG 1304 B 1 HETATM 7 C C7 NAG . . . P 4 250.169 190.2 237.095 1 71.06 ? C7 NAG 1304 B 1 HETATM 8 C C8 NAG . . . P 4 250.155 191.633 236.655 1 71.06 ? C8 NAG 1304 B 1 HETATM 9 N N2 NAG . . . P 4 249.387 189.302 236.479 1 71.06 ? N2 NAG 1304 B 1 HETATM 10 O O3 NAG . . . P 4 250.432 187.158 234.792 1 71.06 ? O3 NAG 1304 B 1 HETATM 11 O O4 NAG . . . P 4 248.945 184.694 234.751 1 71.06 ? O4 NAG 1304 B 1 HETATM 12 O O5 NAG . . . P 4 247.835 186.199 238.014 1 71.06 ? O5 NAG 1304 B 1 HETATM 13 O O6 NAG . . . P 4 246.233 183.749 237.906 1 71.06 ? O6 NAG 1304 B 1 HETATM 14 O O7 NAG . . . P 4 250.905 189.872 238.037 1 71.06 ? O7 NAG 1304 B 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #