data_8D1Q # _model_server_result.job_id bGXV9gB8_v3k5k3m7TlGMQ _model_server_result.datetime_utc '2025-08-28 19:43:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d1q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8D1Q # _exptl.entry_id 8D1Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.256 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R,3R,4S,5R)-2-(6,8-diaminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8D1Q _cell.length_a 85.108 _cell.length_b 85.108 _cell.length_c 292.069 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D1Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H14 N6 O4' _chem_comp.formula_weight 282.256 _chem_comp.id 3BH _chem_comp.mon_nstd_flag . _chem_comp.name (2R,3R,4S,5R)-2-(6,8-diaminopurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 8-aminoadenosine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C8 3BH sing 1 n n C8 C14 3BH sing 2 n n C8 C3 3BH sing 3 n n C14 O19 3BH sing 4 n n C14 C13 3BH sing 5 n n C13 C18 3BH sing 6 n n C13 O7 3BH sing 7 n n C18 O20 3BH sing 8 n n O7 C3 3BH sing 9 n n C3 N1 3BH sing 10 n n N1 C2 3BH sing 11 n y N1 C4 3BH sing 12 n y C2 N6 3BH doub 13 n y C2 C5 3BH sing 14 n y N6 C12 3BH sing 15 n y C12 N16 3BH doub 16 n y N16 C11 3BH sing 17 n y C11 N17 3BH sing 18 n n C11 C5 3BH doub 19 n y C5 N9 3BH sing 20 n y N9 C4 3BH doub 21 n y C4 N10 3BH sing 22 n n O15 HO15 3BH sing 23 n n C8 H8 3BH sing 24 n n C14 H14 3BH sing 25 n n O19 HO19 3BH sing 26 n n C13 H13 3BH sing 27 n n C18 H18 3BH sing 28 n n C18 H18A 3BH sing 29 n n O20 HO20 3BH sing 30 n n C3 H3 3BH sing 31 n n C12 H12 3BH sing 32 n n N17 HN17 3BH sing 33 n n N17 HN1A 3BH sing 34 n n N10 HN10 3BH sing 35 n n N10 HN1B 3BH sing 36 n n # _atom_sites.entry_id 8D1Q _atom_sites.fract_transf_matrix[1][1] 0.01175 _atom_sites.fract_transf_matrix[1][2] 0.006784 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013567 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3BH A 1 601 601 3BH XXX . C 3 SO4 A 1 602 1 SO4 SO4 . D 3 SO4 A 1 603 2 SO4 SO4 . E 3 SO4 A 1 604 3 SO4 SO4 . F 4 HOH A 1 701 28 HOH HOH . F 4 HOH A 2 702 186 HOH HOH . F 4 HOH A 3 703 197 HOH HOH . F 4 HOH A 4 704 86 HOH HOH . F 4 HOH A 5 705 118 HOH HOH . F 4 HOH A 6 706 322 HOH HOH . F 4 HOH A 7 707 276 HOH HOH . F 4 HOH A 8 708 166 HOH HOH . F 4 HOH A 9 709 191 HOH HOH . F 4 HOH A 10 710 156 HOH HOH . F 4 HOH A 11 711 357 HOH HOH . F 4 HOH A 12 712 290 HOH HOH . F 4 HOH A 13 713 309 HOH HOH . F 4 HOH A 14 714 109 HOH HOH . F 4 HOH A 15 715 13 HOH HOH . F 4 HOH A 16 716 192 HOH HOH . F 4 HOH A 17 717 288 HOH HOH . F 4 HOH A 18 718 263 HOH HOH . F 4 HOH A 19 719 332 HOH HOH . F 4 HOH A 20 720 259 HOH HOH . F 4 HOH A 21 721 142 HOH HOH . F 4 HOH A 22 722 80 HOH HOH . F 4 HOH A 23 723 75 HOH HOH . F 4 HOH A 24 724 157 HOH HOH . F 4 HOH A 25 725 195 HOH HOH . F 4 HOH A 26 726 40 HOH HOH . F 4 HOH A 27 727 26 HOH HOH . F 4 HOH A 28 728 280 HOH HOH . F 4 HOH A 29 729 119 HOH HOH . F 4 HOH A 30 730 94 HOH HOH . F 4 HOH A 31 731 220 HOH HOH . F 4 HOH A 32 732 161 HOH HOH . F 4 HOH A 33 733 102 HOH HOH . F 4 HOH A 34 734 6 HOH HOH . F 4 HOH A 35 735 11 HOH HOH . F 4 HOH A 36 736 103 HOH HOH . F 4 HOH A 37 737 7 HOH HOH . F 4 HOH A 38 738 335 HOH HOH . F 4 HOH A 39 739 352 HOH HOH . F 4 HOH A 40 740 262 HOH HOH . F 4 HOH A 41 741 79 HOH HOH . F 4 HOH A 42 742 84 HOH HOH . F 4 HOH A 43 743 97 HOH HOH . F 4 HOH A 44 744 208 HOH HOH . F 4 HOH A 45 745 212 HOH HOH . F 4 HOH A 46 746 132 HOH HOH . F 4 HOH A 47 747 93 HOH HOH . F 4 HOH A 48 748 106 HOH HOH . F 4 HOH A 49 749 151 HOH HOH . F 4 HOH A 50 750 9 HOH HOH . F 4 HOH A 51 751 245 HOH HOH . F 4 HOH A 52 752 37 HOH HOH . F 4 HOH A 53 753 51 HOH HOH . F 4 HOH A 54 754 41 HOH HOH . F 4 HOH A 55 755 67 HOH HOH . F 4 HOH A 56 756 22 HOH HOH . F 4 HOH A 57 757 137 HOH HOH . F 4 HOH A 58 758 3 HOH HOH . F 4 HOH A 59 759 144 HOH HOH . F 4 HOH A 60 760 89 HOH HOH . F 4 HOH A 61 761 155 HOH HOH . F 4 HOH A 62 762 307 HOH HOH . F 4 HOH A 63 763 218 HOH HOH . F 4 HOH A 64 764 34 HOH HOH . F 4 HOH A 65 765 130 HOH HOH . F 4 HOH A 66 766 66 HOH HOH . F 4 HOH A 67 767 111 HOH HOH . F 4 HOH A 68 768 235 HOH HOH . F 4 HOH A 69 769 31 HOH HOH . F 4 HOH A 70 770 125 HOH HOH . F 4 HOH A 71 771 258 HOH HOH . F 4 HOH A 72 772 211 HOH HOH . F 4 HOH A 73 773 115 HOH HOH . F 4 HOH A 74 774 99 HOH HOH . F 4 HOH A 75 775 20 HOH HOH . F 4 HOH A 76 776 12 HOH HOH . F 4 HOH A 77 777 181 HOH HOH . F 4 HOH A 78 778 58 HOH HOH . F 4 HOH A 79 779 200 HOH HOH . F 4 HOH A 80 780 55 HOH HOH . F 4 HOH A 81 781 78 HOH HOH . F 4 HOH A 82 782 48 HOH HOH . F 4 HOH A 83 783 5 HOH HOH . F 4 HOH A 84 784 203 HOH HOH . F 4 HOH A 85 785 62 HOH HOH . F 4 HOH A 86 786 330 HOH HOH . F 4 HOH A 87 787 113 HOH HOH . F 4 HOH A 88 788 158 HOH HOH . F 4 HOH A 89 789 29 HOH HOH . F 4 HOH A 90 790 174 HOH HOH . F 4 HOH A 91 791 266 HOH HOH . F 4 HOH A 92 792 241 HOH HOH . F 4 HOH A 93 793 110 HOH HOH . F 4 HOH A 94 794 268 HOH HOH . F 4 HOH A 95 795 8 HOH HOH . F 4 HOH A 96 796 56 HOH HOH . F 4 HOH A 97 797 179 HOH HOH . F 4 HOH A 98 798 74 HOH HOH . F 4 HOH A 99 799 329 HOH HOH . F 4 HOH A 100 800 52 HOH HOH . F 4 HOH A 101 801 182 HOH HOH . F 4 HOH A 102 802 317 HOH HOH . F 4 HOH A 103 803 100 HOH HOH . F 4 HOH A 104 804 188 HOH HOH . F 4 HOH A 105 805 18 HOH HOH . F 4 HOH A 106 806 88 HOH HOH . F 4 HOH A 107 807 81 HOH HOH . F 4 HOH A 108 808 154 HOH HOH . F 4 HOH A 109 809 83 HOH HOH . F 4 HOH A 110 810 35 HOH HOH . F 4 HOH A 111 811 30 HOH HOH . F 4 HOH A 112 812 163 HOH HOH . F 4 HOH A 113 813 252 HOH HOH . F 4 HOH A 114 814 234 HOH HOH . F 4 HOH A 115 815 135 HOH HOH . F 4 HOH A 116 816 140 HOH HOH . F 4 HOH A 117 817 133 HOH HOH . F 4 HOH A 118 818 63 HOH HOH . F 4 HOH A 119 819 54 HOH HOH . F 4 HOH A 120 820 169 HOH HOH . F 4 HOH A 121 821 32 HOH HOH . F 4 HOH A 122 822 285 HOH HOH . F 4 HOH A 123 823 65 HOH HOH . F 4 HOH A 124 824 126 HOH HOH . F 4 HOH A 125 825 23 HOH HOH . F 4 HOH A 126 826 138 HOH HOH . F 4 HOH A 127 827 61 HOH HOH . F 4 HOH A 128 828 105 HOH HOH . F 4 HOH A 129 829 104 HOH HOH . F 4 HOH A 130 830 246 HOH HOH . F 4 HOH A 131 831 175 HOH HOH . F 4 HOH A 132 832 275 HOH HOH . F 4 HOH A 133 833 225 HOH HOH . F 4 HOH A 134 834 68 HOH HOH . F 4 HOH A 135 835 277 HOH HOH . F 4 HOH A 136 836 231 HOH HOH . F 4 HOH A 137 837 43 HOH HOH . F 4 HOH A 138 838 39 HOH HOH . F 4 HOH A 139 839 14 HOH HOH . F 4 HOH A 140 840 150 HOH HOH . F 4 HOH A 141 841 344 HOH HOH . F 4 HOH A 142 842 189 HOH HOH . F 4 HOH A 143 843 272 HOH HOH . F 4 HOH A 144 844 173 HOH HOH . F 4 HOH A 145 845 120 HOH HOH . F 4 HOH A 146 846 147 HOH HOH . F 4 HOH A 147 847 286 HOH HOH . F 4 HOH A 148 848 318 HOH HOH . F 4 HOH A 149 849 33 HOH HOH . F 4 HOH A 150 850 36 HOH HOH . F 4 HOH A 151 851 85 HOH HOH . F 4 HOH A 152 852 4 HOH HOH . F 4 HOH A 153 853 10 HOH HOH . F 4 HOH A 154 854 71 HOH HOH . F 4 HOH A 155 855 42 HOH HOH . F 4 HOH A 156 856 124 HOH HOH . F 4 HOH A 157 857 73 HOH HOH . F 4 HOH A 158 858 214 HOH HOH . F 4 HOH A 159 859 202 HOH HOH . F 4 HOH A 160 860 117 HOH HOH . F 4 HOH A 161 861 17 HOH HOH . F 4 HOH A 162 862 149 HOH HOH . F 4 HOH A 163 863 327 HOH HOH . F 4 HOH A 164 864 108 HOH HOH . F 4 HOH A 165 865 47 HOH HOH . F 4 HOH A 166 866 194 HOH HOH . F 4 HOH A 167 867 59 HOH HOH . F 4 HOH A 168 868 281 HOH HOH . F 4 HOH A 169 869 53 HOH HOH . F 4 HOH A 170 870 296 HOH HOH . F 4 HOH A 171 871 44 HOH HOH . F 4 HOH A 172 872 247 HOH HOH . F 4 HOH A 173 873 15 HOH HOH . F 4 HOH A 174 874 92 HOH HOH . F 4 HOH A 175 875 91 HOH HOH . F 4 HOH A 176 876 201 HOH HOH . F 4 HOH A 177 877 316 HOH HOH . F 4 HOH A 178 878 128 HOH HOH . F 4 HOH A 179 879 16 HOH HOH . F 4 HOH A 180 880 141 HOH HOH . F 4 HOH A 181 881 82 HOH HOH . F 4 HOH A 182 882 251 HOH HOH . F 4 HOH A 183 883 60 HOH HOH . F 4 HOH A 184 884 19 HOH HOH . F 4 HOH A 185 885 264 HOH HOH . F 4 HOH A 186 886 221 HOH HOH . F 4 HOH A 187 887 72 HOH HOH . F 4 HOH A 188 888 229 HOH HOH . F 4 HOH A 189 889 70 HOH HOH . F 4 HOH A 190 890 46 HOH HOH . F 4 HOH A 191 891 297 HOH HOH . F 4 HOH A 192 892 121 HOH HOH . F 4 HOH A 193 893 283 HOH HOH . F 4 HOH A 194 894 146 HOH HOH . F 4 HOH A 195 895 294 HOH HOH . F 4 HOH A 196 896 152 HOH HOH . F 4 HOH A 197 897 145 HOH HOH . F 4 HOH A 198 898 25 HOH HOH . F 4 HOH A 199 899 49 HOH HOH . F 4 HOH A 200 900 45 HOH HOH . F 4 HOH A 201 901 183 HOH HOH . F 4 HOH A 202 902 27 HOH HOH . F 4 HOH A 203 903 87 HOH HOH . F 4 HOH A 204 904 2 HOH HOH . F 4 HOH A 205 905 271 HOH HOH . F 4 HOH A 206 906 310 HOH HOH . F 4 HOH A 207 907 260 HOH HOH . F 4 HOH A 208 908 210 HOH HOH . F 4 HOH A 209 909 205 HOH HOH . F 4 HOH A 210 910 312 HOH HOH . F 4 HOH A 211 911 193 HOH HOH . F 4 HOH A 212 912 112 HOH HOH . F 4 HOH A 213 913 139 HOH HOH . F 4 HOH A 214 914 293 HOH HOH . F 4 HOH A 215 915 98 HOH HOH . F 4 HOH A 216 916 153 HOH HOH . F 4 HOH A 217 917 184 HOH HOH . F 4 HOH A 218 918 250 HOH HOH . F 4 HOH A 219 919 134 HOH HOH . F 4 HOH A 220 920 228 HOH HOH . F 4 HOH A 221 921 261 HOH HOH . F 4 HOH A 222 922 207 HOH HOH . F 4 HOH A 223 923 315 HOH HOH . F 4 HOH A 224 924 303 HOH HOH . F 4 HOH A 225 925 223 HOH HOH . F 4 HOH A 226 926 50 HOH HOH . F 4 HOH A 227 927 257 HOH HOH . F 4 HOH A 228 928 265 HOH HOH . F 4 HOH A 229 929 167 HOH HOH . F 4 HOH A 230 930 90 HOH HOH . F 4 HOH A 231 931 298 HOH HOH . F 4 HOH A 232 932 301 HOH HOH . F 4 HOH A 233 933 308 HOH HOH . F 4 HOH A 234 934 242 HOH HOH . F 4 HOH A 235 935 270 HOH HOH . F 4 HOH A 236 936 278 HOH HOH . F 4 HOH A 237 937 213 HOH HOH . F 4 HOH A 238 938 324 HOH HOH . F 4 HOH A 239 939 159 HOH HOH . F 4 HOH A 240 940 313 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O15 3BH . . . B 2 19.101 9.564 13.528 1 34.99 ? O15 3BH 601 A 1 HETATM 2 C C8 3BH . . . B 2 18.848 9.711 12.143 1 35.41 ? C8 3BH 601 A 1 HETATM 3 C C14 3BH . . . B 2 18.679 11.171 11.676 1 36.45 ? C14 3BH 601 A 1 HETATM 4 O O19 3BH . . . B 2 18.106 12.03 12.681 1 30.1 ? O19 3BH 601 A 1 HETATM 5 C C13 3BH . . . B 2 17.769 11.013 10.436 1 33.38 ? C13 3BH 601 A 1 HETATM 6 C C18 3BH . . . B 2 18.461 11.18 9.115 1 33.21 ? C18 3BH 601 A 1 HETATM 7 O O20 3BH . . . B 2 19.622 10.357 9.086 1 30.6 ? O20 3BH 601 A 1 HETATM 8 O O7 3BH . . . B 2 17.214 9.678 10.494 1 35.08 ? O7 3BH 601 A 1 HETATM 9 C C3 3BH . . . B 2 17.49 9.126 11.758 1 34.49 ? C3 3BH 601 A 1 HETATM 10 N N1 3BH . . . B 2 17.431 7.674 11.665 1 32.42 ? N1 3BH 601 A 1 HETATM 11 C C2 3BH . . . B 2 16.762 6.872 12.558 1 33.29 ? C2 3BH 601 A 1 HETATM 12 N N6 3BH . . . B 2 15.853 7.242 13.445 1 32.98 ? N6 3BH 601 A 1 HETATM 13 C C12 3BH . . . B 2 15.341 6.186 14.083 1 33.87 ? C12 3BH 601 A 1 HETATM 14 N N16 3BH . . . B 2 15.675 4.908 13.97 1 31.67 ? N16 3BH 601 A 1 HETATM 15 C C11 3BH . . . B 2 16.615 4.559 13.069 1 35.41 ? C11 3BH 601 A 1 HETATM 16 N N17 3BH . . . B 2 17.017 3.282 13.013 1 29.02 ? N17 3BH 601 A 1 HETATM 17 C C5 3BH . . . B 2 17.156 5.58 12.271 1 37.22 ? C5 3BH 601 A 1 HETATM 18 N N9 3BH . . . B 2 18.003 5.548 11.172 1 33.27 ? N9 3BH 601 A 1 HETATM 19 C C4 3BH . . . B 2 18.136 6.815 10.842 1 36.27 ? C4 3BH 601 A 1 HETATM 20 N N10 3BH . . . B 2 18.921 7.256 9.834 1 30.81 ? N10 3BH 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #