data_8D23 # _model_server_result.job_id XU3f4jv-q-XZEHpXeB3xeg _model_server_result.datetime_utc '2025-01-10 06:35:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d23 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8D23 # _exptl.entry_id 8D23 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 338.831 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{2-[(3-chlorophenyl)methoxy]phenyl}-N-[(pyridin-3-yl)methyl]methanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8D23 _cell.length_a 174.826 _cell.length_b 174.826 _cell.length_c 123.721 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D23 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 123.721 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 123.721 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 123.721 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H19 Cl N2 O' _chem_comp.formula_weight 338.831 _chem_comp.id PVU _chem_comp.mon_nstd_flag . _chem_comp.name 1-{2-[(3-chlorophenyl)methoxy]phenyl}-N-[(pyridin-3-yl)methyl]methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C1 PVU sing 290 n n C1 C20 PVU doub 291 n y C1 C2 PVU sing 292 n y C20 C5 PVU sing 293 n y C2 C3 PVU doub 294 n y C5 C6 PVU sing 295 n n C5 C4 PVU doub 296 n y C3 C4 PVU sing 297 n y C6 O1 PVU sing 298 n n C8 C9 PVU doub 299 n y C8 C7 PVU sing 300 n y O1 C7 PVU sing 301 n n C9 C10 PVU sing 302 n y C7 C12 PVU doub 303 n y C18 C17 PVU doub 304 n y C18 C19 PVU sing 305 n y C10 C11 PVU doub 306 n y C17 N2 PVU sing 307 n y C19 C15 PVU doub 308 n y C12 C11 PVU sing 309 n y C12 C13 PVU sing 310 n n C13 N1 PVU sing 311 n n N2 C16 PVU doub 312 n y C15 C16 PVU sing 313 n y C15 C14 PVU sing 314 n n C14 N1 PVU sing 315 n n C2 H1 PVU sing 316 n n C4 H2 PVU sing 317 n n C8 H3 PVU sing 318 n n C9 H4 PVU sing 319 n n C10 H5 PVU sing 320 n n C11 H6 PVU sing 321 n n C13 H7 PVU sing 322 n n C13 H8 PVU sing 323 n n C14 H9 PVU sing 324 n n C14 H10 PVU sing 325 n n C16 H11 PVU sing 326 n n C17 H12 PVU sing 327 n n C18 H13 PVU sing 328 n n C19 H14 PVU sing 329 n n C3 H15 PVU sing 330 n n C6 H16 PVU sing 331 n n C6 H17 PVU sing 332 n n N1 H18 PVU sing 333 n n C20 H20 PVU sing 334 n n # _atom_sites.entry_id 8D23 _atom_sites.fract_transf_matrix[1][1] 0.00572 _atom_sites.fract_transf_matrix[1][2] 0.003302 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006605 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PVU A 1 501 501 PVU A91 . C 3 GOL A 1 502 601 GOL GOL . D 4 HOH A 1 601 119 HOH HOH . D 4 HOH A 2 602 101 HOH HOH . D 4 HOH A 3 603 108 HOH HOH . D 4 HOH A 4 604 59 HOH HOH . D 4 HOH A 5 605 87 HOH HOH . D 4 HOH A 6 606 90 HOH HOH . D 4 HOH A 7 607 5 HOH HOH . D 4 HOH A 8 608 68 HOH HOH . D 4 HOH A 9 609 125 HOH HOH . D 4 HOH A 10 610 58 HOH HOH . D 4 HOH A 11 611 37 HOH HOH . D 4 HOH A 12 612 41 HOH HOH . D 4 HOH A 13 613 40 HOH HOH . D 4 HOH A 14 614 75 HOH HOH . D 4 HOH A 15 615 86 HOH HOH . D 4 HOH A 16 616 80 HOH HOH . D 4 HOH A 17 617 112 HOH HOH . D 4 HOH A 18 618 100 HOH HOH . D 4 HOH A 19 619 21 HOH HOH . D 4 HOH A 20 620 88 HOH HOH . D 4 HOH A 21 621 82 HOH HOH . D 4 HOH A 22 622 111 HOH HOH . D 4 HOH A 23 623 44 HOH HOH . D 4 HOH A 24 624 71 HOH HOH . D 4 HOH A 25 625 2 HOH HOH . D 4 HOH A 26 626 129 HOH HOH . D 4 HOH A 27 627 79 HOH HOH . D 4 HOH A 28 628 47 HOH HOH . D 4 HOH A 29 629 81 HOH HOH . D 4 HOH A 30 630 4 HOH HOH . D 4 HOH A 31 631 118 HOH HOH . D 4 HOH A 32 632 103 HOH HOH . D 4 HOH A 33 633 17 HOH HOH . D 4 HOH A 34 634 54 HOH HOH . D 4 HOH A 35 635 31 HOH HOH . D 4 HOH A 36 636 23 HOH HOH . D 4 HOH A 37 637 46 HOH HOH . D 4 HOH A 38 638 36 HOH HOH . D 4 HOH A 39 639 35 HOH HOH . D 4 HOH A 40 640 51 HOH HOH . D 4 HOH A 41 641 95 HOH HOH . D 4 HOH A 42 642 64 HOH HOH . D 4 HOH A 43 643 89 HOH HOH . D 4 HOH A 44 644 122 HOH HOH . D 4 HOH A 45 645 124 HOH HOH . D 4 HOH A 46 646 62 HOH HOH . D 4 HOH A 47 647 1 HOH HOH . D 4 HOH A 48 648 85 HOH HOH . D 4 HOH A 49 649 52 HOH HOH . D 4 HOH A 50 650 74 HOH HOH . D 4 HOH A 51 651 18 HOH HOH . D 4 HOH A 52 652 16 HOH HOH . D 4 HOH A 53 653 38 HOH HOH . D 4 HOH A 54 654 60 HOH HOH . D 4 HOH A 55 655 39 HOH HOH . D 4 HOH A 56 656 97 HOH HOH . D 4 HOH A 57 657 78 HOH HOH . D 4 HOH A 58 658 22 HOH HOH . D 4 HOH A 59 659 76 HOH HOH . D 4 HOH A 60 660 83 HOH HOH . D 4 HOH A 61 661 3 HOH HOH . D 4 HOH A 62 662 57 HOH HOH . D 4 HOH A 63 663 33 HOH HOH . D 4 HOH A 64 664 91 HOH HOH . D 4 HOH A 65 665 116 HOH HOH . D 4 HOH A 66 666 66 HOH HOH . D 4 HOH A 67 667 12 HOH HOH . D 4 HOH A 68 668 24 HOH HOH . D 4 HOH A 69 669 30 HOH HOH . D 4 HOH A 70 670 67 HOH HOH . D 4 HOH A 71 671 102 HOH HOH . D 4 HOH A 72 672 65 HOH HOH . D 4 HOH A 73 673 77 HOH HOH . D 4 HOH A 74 674 61 HOH HOH . D 4 HOH A 75 675 69 HOH HOH . D 4 HOH A 76 676 117 HOH HOH . D 4 HOH A 77 677 28 HOH HOH . D 4 HOH A 78 678 10 HOH HOH . D 4 HOH A 79 679 6 HOH HOH . D 4 HOH A 80 680 114 HOH HOH . D 4 HOH A 81 681 8 HOH HOH . D 4 HOH A 82 682 43 HOH HOH . D 4 HOH A 83 683 20 HOH HOH . D 4 HOH A 84 684 26 HOH HOH . D 4 HOH A 85 685 14 HOH HOH . D 4 HOH A 86 686 25 HOH HOH . D 4 HOH A 87 687 50 HOH HOH . D 4 HOH A 88 688 110 HOH HOH . D 4 HOH A 89 689 113 HOH HOH . D 4 HOH A 90 690 104 HOH HOH . D 4 HOH A 91 691 96 HOH HOH . D 4 HOH A 92 692 109 HOH HOH . D 4 HOH A 93 693 53 HOH HOH . D 4 HOH A 94 694 105 HOH HOH . D 4 HOH A 95 695 34 HOH HOH . D 4 HOH A 96 696 29 HOH HOH . D 4 HOH A 97 697 55 HOH HOH . D 4 HOH A 98 698 15 HOH HOH . D 4 HOH A 99 699 42 HOH HOH . D 4 HOH A 100 700 115 HOH HOH . D 4 HOH A 101 701 48 HOH HOH . D 4 HOH A 102 702 120 HOH HOH . D 4 HOH A 103 703 73 HOH HOH . D 4 HOH A 104 704 32 HOH HOH . D 4 HOH A 105 705 107 HOH HOH . D 4 HOH A 106 706 45 HOH HOH . D 4 HOH A 107 707 49 HOH HOH . D 4 HOH A 108 708 63 HOH HOH . D 4 HOH A 109 709 99 HOH HOH . D 4 HOH A 110 710 13 HOH HOH . D 4 HOH A 111 711 56 HOH HOH . D 4 HOH A 112 712 7 HOH HOH . D 4 HOH A 113 713 72 HOH HOH . D 4 HOH A 114 714 123 HOH HOH . D 4 HOH A 115 715 70 HOH HOH . D 4 HOH A 116 716 11 HOH HOH . D 4 HOH A 117 717 121 HOH HOH . D 4 HOH A 118 718 106 HOH HOH . D 4 HOH A 119 719 131 HOH HOH . D 4 HOH A 120 720 9 HOH HOH . D 4 HOH A 121 721 92 HOH HOH . D 4 HOH A 122 722 93 HOH HOH . D 4 HOH A 123 723 127 HOH HOH . D 4 HOH A 124 724 27 HOH HOH . D 4 HOH A 125 725 19 HOH HOH . D 4 HOH A 126 726 130 HOH HOH . D 4 HOH A 127 727 94 HOH HOH . D 4 HOH A 128 728 128 HOH HOH . D 4 HOH A 129 729 98 HOH HOH . D 4 HOH A 130 730 84 HOH HOH . D 4 HOH A 131 731 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PVU . . . B 2 1.418 25.634 33.568 1 56.96 ? C1 PVU 501 A 1 HETATM 2 C C2 PVU . . . B 2 0.767 26.713 34.142 1 54.29 ? C2 PVU 501 A 1 HETATM 3 C C4 PVU . . . B 2 -0.057 25.236 35.858 1 51.76 ? C4 PVU 501 A 1 HETATM 4 C C8 PVU . . . B 2 0.486 20.221 36.763 1 64.49 ? C8 PVU 501 A 1 HETATM 5 C C9 PVU . . . B 2 0.459 18.944 37.281 1 63.45 ? C9 PVU 501 A 1 HETATM 6 C C10 PVU . . . B 2 0.901 18.713 38.567 1 70.1 ? C10 PVU 501 A 1 HETATM 7 C C11 PVU . . . B 2 1.373 19.756 39.351 1 70.34 ? C11 PVU 501 A 1 HETATM 8 C C12 PVU . . . B 2 1.42 21.061 38.858 1 67.55 ? C12 PVU 501 A 1 HETATM 9 C C13 PVU . . . B 2 1.904 22.221 39.699 1 63.78 ? C13 PVU 501 A 1 HETATM 10 C C14 PVU . . . B 2 -0.052 23.22 40.883 1 74.41 ? C14 PVU 501 A 1 HETATM 11 C C15 PVU . . . B 2 -1.182 22.595 40.054 1 75.01 ? C15 PVU 501 A 1 HETATM 12 C C16 PVU . . . B 2 -1.922 21.502 40.536 1 72.79 ? C16 PVU 501 A 1 HETATM 13 C C17 PVU . . . B 2 -3.185 21.37 38.631 1 69.79 ? C17 PVU 501 A 1 HETATM 14 C C18 PVU . . . B 2 -2.519 22.46 38.066 1 71.83 ? C18 PVU 501 A 1 HETATM 15 C C19 PVU . . . B 2 -1.518 23.079 38.793 1 67.27 ? C19 PVU 501 A 1 HETATM 16 CL CL1 PVU . . . B 2 2.38 25.841 32.136 1 61.03 ? CL1 PVU 501 A 1 HETATM 17 C C3 PVU . . . B 2 0.033 26.502 35.3 1 57.67 ? C3 PVU 501 A 1 HETATM 18 C C5 PVU . . . B 2 0.603 24.175 35.266 1 58.95 ? C5 PVU 501 A 1 HETATM 19 C C6 PVU . . . B 2 0.456 22.777 35.783 1 65.51 ? C6 PVU 501 A 1 HETATM 20 O O1 PVU . . . B 2 1.005 22.574 37.08 1 61.22 ? O1 PVU 501 A 1 HETATM 21 C C7 PVU . . . B 2 0.964 21.273 37.546 1 69.52 ? C7 PVU 501 A 1 HETATM 22 N N1 PVU . . . B 2 1.157 22.389 40.952 1 67.6 ? N1 PVU 501 A 1 HETATM 23 N N2 PVU . . . B 2 -2.916 20.895 39.86 1 66.44 ? N2 PVU 501 A 1 HETATM 24 C C20 PVU . . . B 2 1.338 24.378 34.109 1 51.5 ? C20 PVU 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 24 #