data_8D2S
#
_model_server_result.job_id            -rAkJC1qAlO4h3fP4IZEqQ 
_model_server_result.datetime_utc      '2024-10-20 05:29:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":618}' 
#
_entry.id    8D2S 
#
_exptl.entry_id    8D2S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
? 5 U N N 
? 5 V N N 
? 5 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 130 B CYS 130 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 C SG CYS 139 C CYS 139 1_555 C SG CYS 186 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A OE1 GLN 50 A GLN 51 1_555 X NA NA . A NA 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc2 A OE1 GLU 183 A GLU 184 1_555 X NA NA . A NA 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc3 A OE2 GLU 183 A GLU 184 1_555 X NA NA . A NA 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? 
metalc ? metalc4 E O19 ZGS . A ZGS 602 1_555 X NA NA . A NA 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc5 X NA NA . A NA 621 1_555 Y O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 194 n n 
C1B O1B LMT sing 195 n n 
C1B O5B LMT sing 196 n n 
C1B H1B LMT sing 197 n n 
C2B C3B LMT sing 198 n n 
C2B O2B LMT sing 199 n n 
C2B H2B LMT sing 200 n n 
C3B C4B LMT sing 201 n n 
C3B O3B LMT sing 202 n n 
C3B H3B LMT sing 203 n n 
C4B C5B LMT sing 204 n n 
C4B O4' LMT sing 205 n n 
C4B H4B LMT sing 206 n n 
C5B C6B LMT sing 207 n n 
C5B O5B LMT sing 208 n n 
C5B H5B LMT sing 209 n n 
C6B O6B LMT sing 210 n n 
C6B "H6'2" LMT sing 211 n n 
C6B "H6'1" LMT sing 212 n n 
O1B C4' LMT sing 213 n n 
O2B H2O1 LMT sing 214 n n 
O3B H3O1 LMT sing 215 n n 
O4' H4O1 LMT sing 216 n n 
O6B H6B LMT sing 217 n n 
C1' C2' LMT sing 218 n n 
C1' O1' LMT sing 219 n n 
C1' O5' LMT sing 220 n n 
C1' H1' LMT sing 221 n n 
C2' C3' LMT sing 222 n n 
C2' O2' LMT sing 223 n n 
C2' H2' LMT sing 224 n n 
C3' C4' LMT sing 225 n n 
C3' O3' LMT sing 226 n n 
C3' H3' LMT sing 227 n n 
C4' C5' LMT sing 228 n n 
C4' H4' LMT sing 229 n n 
C5' C6' LMT sing 230 n n 
C5' O5' LMT sing 231 n n 
C5' H5' LMT sing 232 n n 
C6' O6' LMT sing 233 n n 
C6' H6D LMT sing 234 n n 
C6' H6E LMT sing 235 n n 
O1' C1 LMT sing 236 n n 
O2' H2O2 LMT sing 237 n n 
O3' H3O2 LMT sing 238 n n 
O6' H6' LMT sing 239 n n 
C1 C2 LMT sing 240 n n 
C1 H12 LMT sing 241 n n 
C1 H11 LMT sing 242 n n 
C2 C3 LMT sing 243 n n 
C2 H22 LMT sing 244 n n 
C2 H21 LMT sing 245 n n 
C3 C4 LMT sing 246 n n 
C3 H32 LMT sing 247 n n 
C3 H31 LMT sing 248 n n 
C4 C5 LMT sing 249 n n 
C4 H42 LMT sing 250 n n 
C4 H41 LMT sing 251 n n 
C5 C6 LMT sing 252 n n 
C5 H52 LMT sing 253 n n 
C5 H51 LMT sing 254 n n 
C6 C7 LMT sing 255 n n 
C6 H62 LMT sing 256 n n 
C6 H61 LMT sing 257 n n 
C7 C8 LMT sing 258 n n 
C7 H72 LMT sing 259 n n 
C7 H71 LMT sing 260 n n 
C8 C9 LMT sing 261 n n 
C8 H82 LMT sing 262 n n 
C8 H81 LMT sing 263 n n 
C9 C10 LMT sing 264 n n 
C9 H92 LMT sing 265 n n 
C9 H91 LMT sing 266 n n 
C10 C11 LMT sing 267 n n 
C10 H102 LMT sing 268 n n 
C10 H101 LMT sing 269 n n 
C11 C12 LMT sing 270 n n 
C11 H112 LMT sing 271 n n 
C11 H111 LMT sing 272 n n 
C12 H123 LMT sing 273 n n 
C12 H122 LMT sing 274 n n 
C12 H121 LMT sing 275 n n 
#
_atom_sites.entry_id                     8D2S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZGS A 1 601 600 ZGS ZGS . 
E 4 ZGS A 1 602 601 ZGS ZGS . 
F 4 ZGS A 1 603 602 ZGS ZGS . 
G 5 LMT A 1 604 1 LMT LMT . 
H 5 LMT A 1 605 2 LMT LMT . 
I 5 LMT A 1 606 3 LMT LMT . 
J 5 LMT A 1 607 4 LMT LMT . 
K 5 LMT A 1 608 5 LMT LMT . 
L 5 LMT A 1 609 6 LMT LMT . 
M 5 LMT A 1 610 7 LMT LMT . 
N 5 LMT A 1 611 8 LMT LMT . 
O 5 LMT A 1 612 9 LMT LMT . 
P 5 LMT A 1 613 10 LMT LMT . 
Q 5 LMT A 1 614 11 LMT LMT . 
R 5 LMT A 1 615 12 LMT LMT . 
S 5 LMT A 1 616 13 LMT LMT . 
T 5 LMT A 1 617 14 LMT LMT . 
U 5 LMT A 1 618 15 LMT LMT . 
V 5 LMT A 1 619 16 LMT LMT . 
W 5 LMT A 1 620 17 LMT LMT . 
X 6 NA A 1 621 1 NA NA . 
Y 7 HOH A 1 701 16 HOH HOH . 
Y 7 HOH A 2 702 18 HOH HOH . 
Y 7 HOH A 3 703 12 HOH HOH . 
Y 7 HOH A 4 704 2 HOH HOH . 
Y 7 HOH A 5 705 15 HOH HOH . 
Y 7 HOH A 6 706 10 HOH HOH . 
Y 7 HOH A 7 707 11 HOH HOH . 
Y 7 HOH A 8 708 3 HOH HOH . 
Y 7 HOH A 9 709 24 HOH HOH . 
Y 7 HOH A 10 710 8 HOH HOH . 
Y 7 HOH A 11 711 4 HOH HOH . 
Y 7 HOH A 12 712 23 HOH HOH . 
Y 7 HOH A 13 713 7 HOH HOH . 
Y 7 HOH A 14 714 14 HOH HOH . 
Y 7 HOH A 15 715 27 HOH HOH . 
Y 7 HOH A 16 716 22 HOH HOH . 
Y 7 HOH A 17 717 25 HOH HOH . 
Y 7 HOH A 18 718 9 HOH HOH . 
Y 7 HOH A 19 719 17 HOH HOH . 
Y 7 HOH A 20 720 1 HOH HOH . 
Y 7 HOH A 21 721 5 HOH HOH . 
Y 7 HOH A 22 722 6 HOH HOH . 
Z 7 HOH C 1 301 19 HOH HOH . 
Z 7 HOH C 2 302 28 HOH HOH . 
Z 7 HOH C 3 303 20 HOH HOH . 
Z 7 HOH C 4 304 26 HOH HOH . 
Z 7 HOH C 5 305 21 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1' LMT . . . U 5 178.768 170.175 155.318 1 18.23 ? O1' LMT 618 A 1 
HETATM 2 C C1 LMT . . . U 5 179.01 171.086 156.376 1 18.23 ? C1 LMT 618 A 1 
HETATM 3 C C2 LMT . . . U 5 178.949 170.342 157.724 1 18.23 ? C2 LMT 618 A 1 
HETATM 4 C C3 LMT . . . U 5 178.418 171.31 158.826 1 18.23 ? C3 LMT 618 A 1 
HETATM 5 C C4 LMT . . . U 5 177.848 170.494 160.008 1 18.23 ? C4 LMT 618 A 1 
HETATM 6 C C5 LMT . . . U 5 177.572 171.46 161.205 1 18.23 ? C5 LMT 618 A 1 
HETATM 7 C C6 LMT . . . U 5 178.162 170.869 162.513 1 18.23 ? C6 LMT 618 A 1 
HETATM 8 C C7 LMT . . . U 5 178.131 171.978 163.642 1 18.23 ? C7 LMT 618 A 1 
HETATM 9 C C8 LMT . . . U 5 177.87 171.317 165.029 1 18.23 ? C8 LMT 618 A 1 
HETATM 10 C C9 LMT . . . U 5 178.496 172.221 166.172 1 18.23 ? C9 LMT 618 A 1 
HETATM 11 C C10 LMT . . . U 5 177.783 173.586 166.205 1 18.23 ? C10 LMT 618 A 1 
HETATM 12 C C11 LMT . . . U 5 177.628 174.063 167.696 1 18.23 ? C11 LMT 618 A 1 
HETATM 13 C C12 LMT . . . U 5 178.933 174.574 168.195 1 18.23 ? C12 LMT 618 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#