data_8D2S
#
_model_server_result.job_id            0vej7LwfMfImDvC2Lt19kA 
_model_server_result.datetime_utc      '2024-10-20 05:29:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d2s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":621}' 
#
_entry.id    8D2S 
#
_exptl.entry_id    8D2S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             X 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 130 B CYS 130 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 C SG CYS 139 C CYS 139 1_555 C SG CYS 186 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A OE1 GLN 50 A GLN 51 1_555 X NA NA . A NA 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc2 A OE1 GLU 183 A GLU 184 1_555 X NA NA . A NA 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? 
metalc ? metalc3 A OE2 GLU 183 A GLU 184 1_555 X NA NA . A NA 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? 
metalc ? metalc4 E O19 ZGS . A ZGS 602 1_555 X NA NA . A NA 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc5 X NA NA . A NA 621 1_555 Y O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8D2S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZGS A 1 601 600 ZGS ZGS . 
E 4 ZGS A 1 602 601 ZGS ZGS . 
F 4 ZGS A 1 603 602 ZGS ZGS . 
G 5 LMT A 1 604 1 LMT LMT . 
H 5 LMT A 1 605 2 LMT LMT . 
I 5 LMT A 1 606 3 LMT LMT . 
J 5 LMT A 1 607 4 LMT LMT . 
K 5 LMT A 1 608 5 LMT LMT . 
L 5 LMT A 1 609 6 LMT LMT . 
M 5 LMT A 1 610 7 LMT LMT . 
N 5 LMT A 1 611 8 LMT LMT . 
O 5 LMT A 1 612 9 LMT LMT . 
P 5 LMT A 1 613 10 LMT LMT . 
Q 5 LMT A 1 614 11 LMT LMT . 
R 5 LMT A 1 615 12 LMT LMT . 
S 5 LMT A 1 616 13 LMT LMT . 
T 5 LMT A 1 617 14 LMT LMT . 
U 5 LMT A 1 618 15 LMT LMT . 
V 5 LMT A 1 619 16 LMT LMT . 
W 5 LMT A 1 620 17 LMT LMT . 
X 6 NA A 1 621 1 NA NA . 
Y 7 HOH A 1 701 16 HOH HOH . 
Y 7 HOH A 2 702 18 HOH HOH . 
Y 7 HOH A 3 703 12 HOH HOH . 
Y 7 HOH A 4 704 2 HOH HOH . 
Y 7 HOH A 5 705 15 HOH HOH . 
Y 7 HOH A 6 706 10 HOH HOH . 
Y 7 HOH A 7 707 11 HOH HOH . 
Y 7 HOH A 8 708 3 HOH HOH . 
Y 7 HOH A 9 709 24 HOH HOH . 
Y 7 HOH A 10 710 8 HOH HOH . 
Y 7 HOH A 11 711 4 HOH HOH . 
Y 7 HOH A 12 712 23 HOH HOH . 
Y 7 HOH A 13 713 7 HOH HOH . 
Y 7 HOH A 14 714 14 HOH HOH . 
Y 7 HOH A 15 715 27 HOH HOH . 
Y 7 HOH A 16 716 22 HOH HOH . 
Y 7 HOH A 17 717 25 HOH HOH . 
Y 7 HOH A 18 718 9 HOH HOH . 
Y 7 HOH A 19 719 17 HOH HOH . 
Y 7 HOH A 20 720 1 HOH HOH . 
Y 7 HOH A 21 721 5 HOH HOH . 
Y 7 HOH A 22 722 6 HOH HOH . 
Z 7 HOH C 1 301 19 HOH HOH . 
Z 7 HOH C 2 302 28 HOH HOH . 
Z 7 HOH C 3 303 20 HOH HOH . 
Z 7 HOH C 4 304 26 HOH HOH . 
Z 7 HOH C 5 305 21 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         X 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               168.077 
_atom_site.Cartn_y               167.174 
_atom_site.Cartn_z               185.875 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        27.19 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           621 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#