data_8D2V
#
_model_server_result.job_id            v0T2moAI288rUTOlVEjPkQ 
_model_server_result.datetime_utc      '2024-11-21 13:43:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d2v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":605}' 
#
_entry.id    8D2V 
#
_exptl.entry_id    8D2V 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8D2V 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D2V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 130 B CYS 130 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 C SG CYS 139 C CYS 139 1_555 C SG CYS 186 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OE1 GLN 50 A GLN 51 1_555 M NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc2 A OE2 GLU 183 A GLU 184 1_555 M NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc3 A OH TYR 424 A TYR 425 1_555 M NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc4 D O26 ZGS . A ZGS 601 1_555 M NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 192 n n 
C1B O1B LMT sing 193 n n 
C1B O5B LMT sing 194 n n 
C1B H1B LMT sing 195 n n 
C2B C3B LMT sing 196 n n 
C2B O2B LMT sing 197 n n 
C2B H2B LMT sing 198 n n 
C3B C4B LMT sing 199 n n 
C3B O3B LMT sing 200 n n 
C3B H3B LMT sing 201 n n 
C4B C5B LMT sing 202 n n 
C4B O4' LMT sing 203 n n 
C4B H4B LMT sing 204 n n 
C5B C6B LMT sing 205 n n 
C5B O5B LMT sing 206 n n 
C5B H5B LMT sing 207 n n 
C6B O6B LMT sing 208 n n 
C6B "H6'2" LMT sing 209 n n 
C6B "H6'1" LMT sing 210 n n 
O1B C4' LMT sing 211 n n 
O2B H2O1 LMT sing 212 n n 
O3B H3O1 LMT sing 213 n n 
O4' H4O1 LMT sing 214 n n 
O6B H6B LMT sing 215 n n 
C1' C2' LMT sing 216 n n 
C1' O1' LMT sing 217 n n 
C1' O5' LMT sing 218 n n 
C1' H1' LMT sing 219 n n 
C2' C3' LMT sing 220 n n 
C2' O2' LMT sing 221 n n 
C2' H2' LMT sing 222 n n 
C3' C4' LMT sing 223 n n 
C3' O3' LMT sing 224 n n 
C3' H3' LMT sing 225 n n 
C4' C5' LMT sing 226 n n 
C4' H4' LMT sing 227 n n 
C5' C6' LMT sing 228 n n 
C5' O5' LMT sing 229 n n 
C5' H5' LMT sing 230 n n 
C6' O6' LMT sing 231 n n 
C6' H6D LMT sing 232 n n 
C6' H6E LMT sing 233 n n 
O1' C1 LMT sing 234 n n 
O2' H2O2 LMT sing 235 n n 
O3' H3O2 LMT sing 236 n n 
O6' H6' LMT sing 237 n n 
C1 C2 LMT sing 238 n n 
C1 H12 LMT sing 239 n n 
C1 H11 LMT sing 240 n n 
C2 C3 LMT sing 241 n n 
C2 H22 LMT sing 242 n n 
C2 H21 LMT sing 243 n n 
C3 C4 LMT sing 244 n n 
C3 H32 LMT sing 245 n n 
C3 H31 LMT sing 246 n n 
C4 C5 LMT sing 247 n n 
C4 H42 LMT sing 248 n n 
C4 H41 LMT sing 249 n n 
C5 C6 LMT sing 250 n n 
C5 H52 LMT sing 251 n n 
C5 H51 LMT sing 252 n n 
C6 C7 LMT sing 253 n n 
C6 H62 LMT sing 254 n n 
C6 H61 LMT sing 255 n n 
C7 C8 LMT sing 256 n n 
C7 H72 LMT sing 257 n n 
C7 H71 LMT sing 258 n n 
C8 C9 LMT sing 259 n n 
C8 H82 LMT sing 260 n n 
C8 H81 LMT sing 261 n n 
C9 C10 LMT sing 262 n n 
C9 H92 LMT sing 263 n n 
C9 H91 LMT sing 264 n n 
C10 C11 LMT sing 265 n n 
C10 H102 LMT sing 266 n n 
C10 H101 LMT sing 267 n n 
C11 C12 LMT sing 268 n n 
C11 H112 LMT sing 269 n n 
C11 H111 LMT sing 270 n n 
C12 H123 LMT sing 271 n n 
C12 H122 LMT sing 272 n n 
C12 H121 LMT sing 273 n n 
#
_atom_sites.entry_id                     8D2V 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZGS A 1 601 600 ZGS ZGS . 
E 5 LMT A 1 602 1 LMT LMT . 
F 5 LMT A 1 603 2 LMT LMT . 
G 5 LMT A 1 604 3 LMT LMT . 
H 5 LMT A 1 605 4 LMT LMT . 
I 5 LMT A 1 606 5 LMT LMT . 
J 5 LMT A 1 607 6 LMT LMT . 
K 5 LMT A 1 608 7 LMT LMT . 
L 5 LMT A 1 609 8 LMT LMT . 
M 6 NA A 1 610 1 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . H 5 168.084 143.334 152.138 1 85.46 ? C1B LMT 605 A 1 
HETATM 2 C C2B LMT . . . H 5 166.873 144.203 151.838 1 85.46 ? C2B LMT 605 A 1 
HETATM 3 C C3B LMT . . . H 5 165.686 143.399 151.395 1 85.46 ? C3B LMT 605 A 1 
HETATM 4 C C4B LMT . . . H 5 165.291 142.285 152.348 1 85.46 ? C4B LMT 605 A 1 
HETATM 5 C C5B LMT . . . H 5 166.472 141.591 153.004 1 85.46 ? C5B LMT 605 A 1 
HETATM 6 C C6B LMT . . . H 5 166.219 140.115 153.013 1 85.46 ? C6B LMT 605 A 1 
HETATM 7 O O1B LMT . . . H 5 168.683 143.776 153.297 1 85.46 ? O1B LMT 605 A 1 
HETATM 8 O O2B LMT . . . H 5 166.524 144.947 153.009 1 85.46 ? O2B LMT 605 A 1 
HETATM 9 O O3B LMT . . . H 5 165.968 142.83 150.108 1 85.46 ? O3B LMT 605 A 1 
HETATM 10 O O4' LMT . . . H 5 164.444 142.827 153.374 1 85.46 ? O4' LMT 605 A 1 
HETATM 11 O O5B LMT . . . H 5 167.751 141.863 152.277 1 85.46 ? O5B LMT 605 A 1 
HETATM 12 O O6B LMT . . . H 5 165.081 139.827 153.831 1 85.46 ? O6B LMT 605 A 1 
HETATM 13 C C1' LMT . . . H 5 170.814 144.392 155.852 1 85.46 ? C1' LMT 605 A 1 
HETATM 14 C C2' LMT . . . H 5 171.474 145.122 154.696 1 85.46 ? C2' LMT 605 A 1 
HETATM 15 C C3' LMT . . . H 5 170.851 144.821 153.375 1 85.46 ? C3' LMT 605 A 1 
HETATM 16 C C4' LMT . . . H 5 170.097 143.511 153.246 1 85.46 ? C4' LMT 605 A 1 
HETATM 17 C C5' LMT . . . H 5 170.431 142.423 154.295 1 85.46 ? C5' LMT 605 A 1 
HETATM 18 C C6' LMT . . . H 5 171.521 141.512 153.732 1 85.46 ? C6' LMT 605 A 1 
HETATM 19 O O1' LMT . . . H 5 171.462 144.685 157.014 1 85.46 ? O1' LMT 605 A 1 
HETATM 20 O O2' LMT . . . H 5 171.398 146.551 154.936 1 85.46 ? O2' LMT 605 A 1 
HETATM 21 O O3' LMT . . . H 5 171.897 144.844 152.363 1 85.46 ? O3' LMT 605 A 1 
HETATM 22 O O5' LMT . . . H 5 170.853 142.892 155.626 1 85.46 ? O5' LMT 605 A 1 
HETATM 23 O O6' LMT . . . H 5 172.538 141.328 154.706 1 85.46 ? O6' LMT 605 A 1 
HETATM 24 C C1 LMT . . . H 5 170.901 144.044 158.148 1 85.46 ? C1 LMT 605 A 1 
HETATM 25 C C2 LMT . . . H 5 171.479 144.645 159.445 1 85.46 ? C2 LMT 605 A 1 
HETATM 26 C C3 LMT . . . H 5 171.153 143.701 160.644 1 85.46 ? C3 LMT 605 A 1 
HETATM 27 C C4 LMT . . . H 5 171.411 144.439 161.978 1 85.46 ? C4 LMT 605 A 1 
HETATM 28 C C5 LMT . . . H 5 170.289 144.063 162.999 1 85.46 ? C5 LMT 605 A 1 
HETATM 29 C C6 LMT . . . H 5 170.82 144.216 164.45 1 85.46 ? C6 LMT 605 A 1 
HETATM 30 C C7 LMT . . . H 5 171.98 143.173 164.718 1 85.46 ? C7 LMT 605 A 1 
HETATM 31 C C8 LMT . . . H 5 172.496 143.319 166.183 1 85.46 ? C8 LMT 605 A 1 
HETATM 32 C C9 LMT . . . H 5 173.726 144.319 166.224 1 85.46 ? C9 LMT 605 A 1 
HETATM 33 C C10 LMT . . . H 5 174.884 143.75 165.384 1 85.46 ? C10 LMT 605 A 1 
HETATM 34 C C11 LMT . . . H 5 176.016 144.833 165.241 1 85.46 ? C11 LMT 605 A 1 
HETATM 35 C C12 LMT . . . H 5 176.78 144.594 163.987 1 85.46 ? C12 LMT 605 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#