data_8D2V # _model_server_result.job_id 6N6IanqR4i5pWZpTt8wQ-Q _model_server_result.datetime_utc '2024-11-21 14:30:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d2v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":606}' # _entry.id 8D2V # _exptl.entry_id 8D2V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8D2V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D2V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 130 B CYS 130 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 C SG CYS 139 C CYS 139 1_555 C SG CYS 186 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OE1 GLN 50 A GLN 51 1_555 M NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc2 A OE2 GLU 183 A GLU 184 1_555 M NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc3 A OH TYR 424 A TYR 425 1_555 M NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 D O26 ZGS . A ZGS 601 1_555 M NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 192 n n C1B O1B LMT sing 193 n n C1B O5B LMT sing 194 n n C1B H1B LMT sing 195 n n C2B C3B LMT sing 196 n n C2B O2B LMT sing 197 n n C2B H2B LMT sing 198 n n C3B C4B LMT sing 199 n n C3B O3B LMT sing 200 n n C3B H3B LMT sing 201 n n C4B C5B LMT sing 202 n n C4B O4' LMT sing 203 n n C4B H4B LMT sing 204 n n C5B C6B LMT sing 205 n n C5B O5B LMT sing 206 n n C5B H5B LMT sing 207 n n C6B O6B LMT sing 208 n n C6B "H6'2" LMT sing 209 n n C6B "H6'1" LMT sing 210 n n O1B C4' LMT sing 211 n n O2B H2O1 LMT sing 212 n n O3B H3O1 LMT sing 213 n n O4' H4O1 LMT sing 214 n n O6B H6B LMT sing 215 n n C1' C2' LMT sing 216 n n C1' O1' LMT sing 217 n n C1' O5' LMT sing 218 n n C1' H1' LMT sing 219 n n C2' C3' LMT sing 220 n n C2' O2' LMT sing 221 n n C2' H2' LMT sing 222 n n C3' C4' LMT sing 223 n n C3' O3' LMT sing 224 n n C3' H3' LMT sing 225 n n C4' C5' LMT sing 226 n n C4' H4' LMT sing 227 n n C5' C6' LMT sing 228 n n C5' O5' LMT sing 229 n n C5' H5' LMT sing 230 n n C6' O6' LMT sing 231 n n C6' H6D LMT sing 232 n n C6' H6E LMT sing 233 n n O1' C1 LMT sing 234 n n O2' H2O2 LMT sing 235 n n O3' H3O2 LMT sing 236 n n O6' H6' LMT sing 237 n n C1 C2 LMT sing 238 n n C1 H12 LMT sing 239 n n C1 H11 LMT sing 240 n n C2 C3 LMT sing 241 n n C2 H22 LMT sing 242 n n C2 H21 LMT sing 243 n n C3 C4 LMT sing 244 n n C3 H32 LMT sing 245 n n C3 H31 LMT sing 246 n n C4 C5 LMT sing 247 n n C4 H42 LMT sing 248 n n C4 H41 LMT sing 249 n n C5 C6 LMT sing 250 n n C5 H52 LMT sing 251 n n C5 H51 LMT sing 252 n n C6 C7 LMT sing 253 n n C6 H62 LMT sing 254 n n C6 H61 LMT sing 255 n n C7 C8 LMT sing 256 n n C7 H72 LMT sing 257 n n C7 H71 LMT sing 258 n n C8 C9 LMT sing 259 n n C8 H82 LMT sing 260 n n C8 H81 LMT sing 261 n n C9 C10 LMT sing 262 n n C9 H92 LMT sing 263 n n C9 H91 LMT sing 264 n n C10 C11 LMT sing 265 n n C10 H102 LMT sing 266 n n C10 H101 LMT sing 267 n n C11 C12 LMT sing 268 n n C11 H112 LMT sing 269 n n C11 H111 LMT sing 270 n n C12 H123 LMT sing 271 n n C12 H122 LMT sing 272 n n C12 H121 LMT sing 273 n n # _atom_sites.entry_id 8D2V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZGS A 1 601 600 ZGS ZGS . E 5 LMT A 1 602 1 LMT LMT . F 5 LMT A 1 603 2 LMT LMT . G 5 LMT A 1 604 3 LMT LMT . H 5 LMT A 1 605 4 LMT LMT . I 5 LMT A 1 606 5 LMT LMT . J 5 LMT A 1 607 6 LMT LMT . K 5 LMT A 1 608 7 LMT LMT . L 5 LMT A 1 609 8 LMT LMT . M 6 NA A 1 610 1 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . I 5 153.423 165.266 144.689 1 65.5 ? C1B LMT 606 A 1 HETATM 2 C C2B LMT . . . I 5 153.764 165.93 143.364 1 65.5 ? C2B LMT 606 A 1 HETATM 3 C C3B LMT . . . I 5 155.241 165.922 143.164 1 65.5 ? C3B LMT 606 A 1 HETATM 4 C C4B LMT . . . I 5 155.767 164.514 143.059 1 65.5 ? C4B LMT 606 A 1 HETATM 5 C C5B LMT . . . I 5 155.338 163.669 144.243 1 65.5 ? C5B LMT 606 A 1 HETATM 6 C C6B LMT . . . I 5 156.562 163.111 144.893 1 65.5 ? C6B LMT 606 A 1 HETATM 7 O O1B LMT . . . I 5 152.332 164.421 144.566 1 65.5 ? O1B LMT 606 A 1 HETATM 8 O O2B LMT . . . I 5 153.136 165.218 142.295 1 65.5 ? O2B LMT 606 A 1 HETATM 9 O O3B LMT . . . I 5 155.835 166.528 144.314 1 65.5 ? O3B LMT 606 A 1 HETATM 10 O O4' LMT . . . I 5 155.239 163.934 141.86 1 65.5 ? O4' LMT 606 A 1 HETATM 11 O O5B LMT . . . I 5 154.585 164.473 145.256 1 65.5 ? O5B LMT 606 A 1 HETATM 12 O O6B LMT . . . I 5 157.088 164.085 145.795 1 65.5 ? O6B LMT 606 A 1 HETATM 13 C C1' LMT . . . I 5 150.251 166.887 147.148 1 65.5 ? C1' LMT 606 A 1 HETATM 14 C C2' LMT . . . I 5 150.858 165.673 147.826 1 65.5 ? C2' LMT 606 A 1 HETATM 15 C C3' LMT . . . I 5 151.719 164.861 146.923 1 65.5 ? C3' LMT 606 A 1 HETATM 16 C C4' LMT . . . I 5 151.242 164.698 145.486 1 65.5 ? C4' LMT 606 A 1 HETATM 17 C C5' LMT . . . I 5 150.418 165.874 144.923 1 65.5 ? C5' LMT 606 A 1 HETATM 18 C C6' LMT . . . I 5 149.603 165.368 143.738 1 65.5 ? C6' LMT 606 A 1 HETATM 19 O O1' LMT . . . I 5 149.38 167.489 148.002 1 65.5 ? O1' LMT 606 A 1 HETATM 20 O O2' LMT . . . I 5 151.673 166.135 148.932 1 65.5 ? O2' LMT 606 A 1 HETATM 21 O O3' LMT . . . I 5 151.874 163.538 147.507 1 65.5 ? O3' LMT 606 A 1 HETATM 22 O O5' LMT . . . I 5 149.51 166.473 145.897 1 65.5 ? O5' LMT 606 A 1 HETATM 23 O O6' LMT . . . I 5 149.049 164.101 144.056 1 65.5 ? O6' LMT 606 A 1 HETATM 24 C C1 LMT . . . I 5 149.072 168.829 147.662 1 65.5 ? C1 LMT 606 A 1 HETATM 25 C C2 LMT . . . I 5 147.984 169.362 148.615 1 65.5 ? C2 LMT 606 A 1 HETATM 26 C C3 LMT . . . I 5 147.096 168.178 149.109 1 65.5 ? C3 LMT 606 A 1 HETATM 27 C C4 LMT . . . I 5 146.589 168.476 150.539 1 65.5 ? C4 LMT 606 A 1 HETATM 28 C C5 LMT . . . I 5 145.598 167.354 150.989 1 65.5 ? C5 LMT 606 A 1 HETATM 29 C C6 LMT . . . I 5 145.928 166.943 152.449 1 65.5 ? C6 LMT 606 A 1 HETATM 30 C C7 LMT . . . I 5 145.684 168.18 153.404 1 65.5 ? C7 LMT 606 A 1 HETATM 31 C C8 LMT . . . I 5 145.651 167.717 154.893 1 65.5 ? C8 LMT 606 A 1 HETATM 32 C C9 LMT . . . I 5 147.097 167.237 155.328 1 65.5 ? C9 LMT 606 A 1 HETATM 33 C C10 LMT . . . I 5 147.387 167.716 156.762 1 65.5 ? C10 LMT 606 A 1 HETATM 34 C C11 LMT . . . I 5 148.533 166.843 157.39 1 65.5 ? C11 LMT 606 A 1 HETATM 35 C C12 LMT . . . I 5 148.468 166.934 158.873 1 65.5 ? C12 LMT 606 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #