data_8D2X # _model_server_result.job_id pqTLv58ZNdOO81TmLgw_6g _model_server_result.datetime_utc '2024-11-04 23:15:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 8D2X # _exptl.entry_id 8D2X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 518.644 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 130 B CYS 130 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 C SG CYS 139 C CYS 139 1_555 C SG CYS 186 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C26 H49 N O7 P 1' _chem_comp.formula_weight 518.644 _chem_comp.id ZGS _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms LysoPC(18:3(9Z,12Z,15Z)) # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 ZGS sing 458 n n C03 C02 ZGS sing 459 n n C03 C04 ZGS doub 460 z n C04 C05 ZGS sing 461 n n C05 C06 ZGS sing 462 n n C06 C07 ZGS doub 463 z n C08 C07 ZGS sing 464 n n C08 C09 ZGS sing 465 n n C09 C10 ZGS doub 466 z n C10 C11 ZGS sing 467 n n C11 C12 ZGS sing 468 n n C12 C13 ZGS sing 469 n n C13 C14 ZGS sing 470 n n C14 C15 ZGS sing 471 n n O19 C18 ZGS doub 472 n n C16 C17 ZGS sing 473 n n C16 C15 ZGS sing 474 n n C17 C18 ZGS sing 475 n n C18 O20 ZGS sing 476 n n O20 C21 ZGS sing 477 n n O35 C22 ZGS sing 478 n n C21 C22 ZGS sing 479 n n O26 P25 ZGS doub 480 n n C22 C23 ZGS sing 481 n n O27 P25 ZGS sing 482 n n P25 O24 ZGS sing 483 n n P25 O28 ZGS sing 484 n n C23 O24 ZGS sing 485 n n O28 C29 ZGS sing 486 n n C29 C30 ZGS sing 487 n n C30 N31 ZGS sing 488 n n C32 N31 ZGS sing 489 n n N31 C33 ZGS sing 490 n n N31 C34 ZGS sing 491 n n C01 H1 ZGS sing 492 n n C01 H2 ZGS sing 493 n n C01 H3 ZGS sing 494 n n C02 H4 ZGS sing 495 n n C02 H5 ZGS sing 496 n n C03 H6 ZGS sing 497 n n C04 H7 ZGS sing 498 n n C05 H8 ZGS sing 499 n n C05 H9 ZGS sing 500 n n C06 H10 ZGS sing 501 n n C07 H11 ZGS sing 502 n n C08 H12 ZGS sing 503 n n C08 H13 ZGS sing 504 n n C09 H14 ZGS sing 505 n n C10 H15 ZGS sing 506 n n C11 H16 ZGS sing 507 n n C11 H17 ZGS sing 508 n n C12 H18 ZGS sing 509 n n C12 H19 ZGS sing 510 n n C13 H20 ZGS sing 511 n n C13 H21 ZGS sing 512 n n C14 H22 ZGS sing 513 n n C14 H23 ZGS sing 514 n n C15 H24 ZGS sing 515 n n C15 H25 ZGS sing 516 n n C16 H26 ZGS sing 517 n n C16 H27 ZGS sing 518 n n C17 H28 ZGS sing 519 n n C17 H29 ZGS sing 520 n n C21 H30 ZGS sing 521 n n C21 H31 ZGS sing 522 n n C22 H32 ZGS sing 523 n n C23 H33 ZGS sing 524 n n C23 H34 ZGS sing 525 n n C29 H35 ZGS sing 526 n n C29 H36 ZGS sing 527 n n C30 H37 ZGS sing 528 n n C30 H38 ZGS sing 529 n n C32 H39 ZGS sing 530 n n C32 H40 ZGS sing 531 n n C32 H41 ZGS sing 532 n n C33 H42 ZGS sing 533 n n C33 H43 ZGS sing 534 n n C33 H44 ZGS sing 535 n n C34 H45 ZGS sing 536 n n C34 H46 ZGS sing 537 n n C34 H47 ZGS sing 538 n n O27 H48 ZGS sing 539 n n O35 H49 ZGS sing 540 n n # _atom_sites.entry_id 8D2X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZGS A 1 601 600 ZGS ZGS . E 5 LMT A 1 602 1 LMT LMT . F 5 LMT A 1 603 3 LMT LMT . G 5 LMT A 1 604 4 LMT LMT . H 5 LMT A 1 605 5 LMT LMT . I 5 LMT A 1 606 6 LMT LMT . J 5 LMT A 1 607 7 LMT LMT . K 5 LMT A 1 608 8 LMT LMT . L 5 LMT A 1 609 9 LMT LMT . M 5 LMT A 1 610 10 LMT LMT . N 5 LMT A 1 611 11 LMT LMT . O 5 LMT A 1 612 12 LMT LMT . P 5 LMT A 1 613 13 LMT LMT . Q 5 LMT A 1 614 15 LMT LMT . R 6 HOH A 1 701 4 HOH HOH . R 6 HOH A 2 702 1 HOH HOH . R 6 HOH A 3 703 3 HOH HOH . R 6 HOH A 4 704 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 ZGS . . . D 4 155.212 165.238 190.059 1 28.1 ? C01 ZGS 601 A 1 HETATM 2 C C02 ZGS . . . D 4 156.453 164.401 189.691 1 28.1 ? C02 ZGS 601 A 1 HETATM 3 C C03 ZGS . . . D 4 156.722 163.392 190.826 1 28.1 ? C03 ZGS 601 A 1 HETATM 4 C C04 ZGS . . . D 4 158.021 163.308 191.075 1 28.1 ? C04 ZGS 601 A 1 HETATM 5 C C05 ZGS . . . D 4 159.483 163.722 190.805 1 28.1 ? C05 ZGS 601 A 1 HETATM 6 C C06 ZGS . . . D 4 160.5 164.44 191.708 1 28.1 ? C06 ZGS 601 A 1 HETATM 7 C C07 ZGS . . . D 4 161.386 163.585 192.195 1 28.1 ? C07 ZGS 601 A 1 HETATM 8 C C08 ZGS . . . D 4 162.62 163.243 193.042 1 28.1 ? C08 ZGS 601 A 1 HETATM 9 C C09 ZGS . . . D 4 163.305 162.017 192.431 1 28.1 ? C09 ZGS 601 A 1 HETATM 10 C C10 ZGS . . . D 4 164.505 161.832 192.941 1 28.1 ? C10 ZGS 601 A 1 HETATM 11 C C11 ZGS . . . D 4 165.654 162.223 193.877 1 28.1 ? C11 ZGS 601 A 1 HETATM 12 C C12 ZGS . . . D 4 166.347 160.969 194.411 1 28.1 ? C12 ZGS 601 A 1 HETATM 13 C C13 ZGS . . . D 4 167.841 161.05 194.092 1 28.1 ? C13 ZGS 601 A 1 HETATM 14 C C14 ZGS . . . D 4 168.536 161.989 195.089 1 28.1 ? C14 ZGS 601 A 1 HETATM 15 C C15 ZGS . . . D 4 170.025 162.048 194.73 1 28.1 ? C15 ZGS 601 A 1 HETATM 16 C C16 ZGS . . . D 4 170.784 162.856 195.798 1 28.1 ? C16 ZGS 601 A 1 HETATM 17 C C17 ZGS . . . D 4 172.278 162.484 195.747 1 28.1 ? C17 ZGS 601 A 1 HETATM 18 C C18 ZGS . . . D 4 173.031 163.135 196.922 1 28.1 ? C18 ZGS 601 A 1 HETATM 19 C C21 ZGS . . . D 4 174.937 163.979 195.835 1 28.1 ? C21 ZGS 601 A 1 HETATM 20 C C22 ZGS . . . D 4 175.907 163.003 196.513 1 28.1 ? C22 ZGS 601 A 1 HETATM 21 O O19 ZGS . . . D 4 172.912 162.7 198.019 1 28.1 ? O19 ZGS 601 A 1 HETATM 22 O O20 ZGS . . . D 4 173.864 164.246 196.697 1 28.1 ? O20 ZGS 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #