data_8D2X # _model_server_result.job_id n2T6JpEvVTdW0EAvQuLdIw _model_server_result.datetime_utc '2024-11-04 23:10:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 8D2X # _exptl.entry_id 8D2X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 130 B CYS 130 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 C SG CYS 139 C CYS 139 1_555 C SG CYS 186 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 8D2X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZGS A 1 601 600 ZGS ZGS . E 5 LMT A 1 602 1 LMT LMT . F 5 LMT A 1 603 3 LMT LMT . G 5 LMT A 1 604 4 LMT LMT . H 5 LMT A 1 605 5 LMT LMT . I 5 LMT A 1 606 6 LMT LMT . J 5 LMT A 1 607 7 LMT LMT . K 5 LMT A 1 608 8 LMT LMT . L 5 LMT A 1 609 9 LMT LMT . M 5 LMT A 1 610 10 LMT LMT . N 5 LMT A 1 611 11 LMT LMT . O 5 LMT A 1 612 12 LMT LMT . P 5 LMT A 1 613 13 LMT LMT . Q 5 LMT A 1 614 15 LMT LMT . R 6 HOH A 1 701 4 HOH HOH . R 6 HOH A 2 702 1 HOH HOH . R 6 HOH A 3 703 3 HOH HOH . R 6 HOH A 4 704 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . E 5 174.764 172.67 148.934 1 61.64 ? C1B LMT 602 A 1 HETATM 2 C C2B LMT . . . E 5 174.682 173.642 150.094 1 61.64 ? C2B LMT 602 A 1 HETATM 3 C C3B LMT . . . E 5 174.632 175.066 149.638 1 61.64 ? C3B LMT 602 A 1 HETATM 4 C C4B LMT . . . E 5 173.588 175.34 148.566 1 61.64 ? C4B LMT 602 A 1 HETATM 5 C C5B LMT . . . E 5 173.472 174.281 147.475 1 61.64 ? C5B LMT 602 A 1 HETATM 6 C C6B LMT . . . E 5 174.474 174.553 146.392 1 61.64 ? C6B LMT 602 A 1 HETATM 7 O O1B LMT . . . E 5 174.689 171.395 149.443 1 61.64 ? O1B LMT 602 A 1 HETATM 8 O O2B LMT . . . E 5 173.502 173.363 150.85 1 61.64 ? O2B LMT 602 A 1 HETATM 9 O O3B LMT . . . E 5 175.933 175.458 149.173 1 61.64 ? O3B LMT 602 A 1 HETATM 10 O O4' LMT . . . E 5 172.307 175.465 149.207 1 61.64 ? O4' LMT 602 A 1 HETATM 11 O O5B LMT . . . E 5 173.632 172.872 147.959 1 61.64 ? O5B LMT 602 A 1 HETATM 12 O O6B LMT . . . E 5 174.273 175.874 145.879 1 61.64 ? O6B LMT 602 A 1 HETATM 13 C C1' LMT . . . E 5 176.113 168.509 150.139 1 61.64 ? C1' LMT 602 A 1 HETATM 14 C C2' LMT . . . E 5 177.033 169.135 149.1 1 61.64 ? C2' LMT 602 A 1 HETATM 15 C C3' LMT . . . E 5 176.412 170.201 148.255 1 61.64 ? C3' LMT 602 A 1 HETATM 16 C C4' LMT . . . E 5 174.923 170.423 148.408 1 61.64 ? C4' LMT 602 A 1 HETATM 17 C C5' LMT . . . E 5 174.108 169.146 148.716 1 61.64 ? C5' LMT 602 A 1 HETATM 18 C C6' LMT . . . E 5 173.7 168.497 147.396 1 61.64 ? C6' LMT 602 A 1 HETATM 19 O O1' LMT . . . E 5 176.703 167.395 150.654 1 61.64 ? O1' LMT 602 A 1 HETATM 20 O O2' LMT . . . E 5 178.181 169.704 149.784 1 61.64 ? O2' LMT 602 A 1 HETATM 21 O O3' LMT . . . E 5 176.689 169.898 146.858 1 61.64 ? O3' LMT 602 A 1 HETATM 22 O O5' LMT . . . E 5 174.772 168.123 149.54 1 61.64 ? O5' LMT 602 A 1 HETATM 23 O O6' LMT . . . E 5 173.694 167.085 147.543 1 61.64 ? O6' LMT 602 A 1 HETATM 24 C C1 LMT . . . E 5 175.928 166.764 151.656 1 61.64 ? C1 LMT 602 A 1 HETATM 25 C C2 LMT . . . E 5 176.725 166.712 152.974 1 61.64 ? C2 LMT 602 A 1 HETATM 26 C C3 LMT . . . E 5 175.838 166.063 154.079 1 61.64 ? C3 LMT 602 A 1 HETATM 27 C C4 LMT . . . E 5 176.727 165.403 155.157 1 61.64 ? C4 LMT 602 A 1 HETATM 28 C C5 LMT . . . E 5 177.726 166.456 155.736 1 61.64 ? C5 LMT 602 A 1 HETATM 29 C C6 LMT . . . E 5 179.123 165.8 155.898 1 61.64 ? C6 LMT 602 A 1 HETATM 30 C C7 LMT . . . E 5 179.017 164.522 156.828 1 61.64 ? C7 LMT 602 A 1 HETATM 31 C C8 LMT . . . E 5 178.782 164.969 158.303 1 61.64 ? C8 LMT 602 A 1 HETATM 32 C C9 LMT . . . E 5 179.977 165.901 158.763 1 61.64 ? C9 LMT 602 A 1 HETATM 33 C C10 LMT . . . E 5 179.436 166.992 159.703 1 61.64 ? C10 LMT 602 A 1 HETATM 34 C C11 LMT . . . E 5 180.637 167.765 160.36 1 61.64 ? C11 LMT 602 A 1 HETATM 35 C C12 LMT . . . E 5 180.204 168.329 161.667 1 61.64 ? C12 LMT 602 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #