data_8D2X
#
_model_server_result.job_id            g1BCZY6fa8oM8ISKpwkTWg 
_model_server_result.datetime_utc      '2024-11-21 14:36:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d2x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":608}' 
#
_entry.id    8D2X 
#
_exptl.entry_id    8D2X 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              510.615 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DODECYL-BETA-D-MALTOSIDE 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 130 B CYS 130 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf4 C SG CYS 139 C CYS 139 1_555 C SG CYS 186 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C24 H46 O11' 
_chem_comp.formula_weight    510.615 
_chem_comp.id                LMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DODECYL-BETA-D-MALTOSIDE 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1B C2B LMT sing 194 n n 
C1B O1B LMT sing 195 n n 
C1B O5B LMT sing 196 n n 
C1B H1B LMT sing 197 n n 
C2B C3B LMT sing 198 n n 
C2B O2B LMT sing 199 n n 
C2B H2B LMT sing 200 n n 
C3B C4B LMT sing 201 n n 
C3B O3B LMT sing 202 n n 
C3B H3B LMT sing 203 n n 
C4B C5B LMT sing 204 n n 
C4B O4' LMT sing 205 n n 
C4B H4B LMT sing 206 n n 
C5B C6B LMT sing 207 n n 
C5B O5B LMT sing 208 n n 
C5B H5B LMT sing 209 n n 
C6B O6B LMT sing 210 n n 
C6B "H6'2" LMT sing 211 n n 
C6B "H6'1" LMT sing 212 n n 
O1B C4' LMT sing 213 n n 
O2B H2O1 LMT sing 214 n n 
O3B H3O1 LMT sing 215 n n 
O4' H4O1 LMT sing 216 n n 
O6B H6B LMT sing 217 n n 
C1' C2' LMT sing 218 n n 
C1' O1' LMT sing 219 n n 
C1' O5' LMT sing 220 n n 
C1' H1' LMT sing 221 n n 
C2' C3' LMT sing 222 n n 
C2' O2' LMT sing 223 n n 
C2' H2' LMT sing 224 n n 
C3' C4' LMT sing 225 n n 
C3' O3' LMT sing 226 n n 
C3' H3' LMT sing 227 n n 
C4' C5' LMT sing 228 n n 
C4' H4' LMT sing 229 n n 
C5' C6' LMT sing 230 n n 
C5' O5' LMT sing 231 n n 
C5' H5' LMT sing 232 n n 
C6' O6' LMT sing 233 n n 
C6' H6D LMT sing 234 n n 
C6' H6E LMT sing 235 n n 
O1' C1 LMT sing 236 n n 
O2' H2O2 LMT sing 237 n n 
O3' H3O2 LMT sing 238 n n 
O6' H6' LMT sing 239 n n 
C1 C2 LMT sing 240 n n 
C1 H12 LMT sing 241 n n 
C1 H11 LMT sing 242 n n 
C2 C3 LMT sing 243 n n 
C2 H22 LMT sing 244 n n 
C2 H21 LMT sing 245 n n 
C3 C4 LMT sing 246 n n 
C3 H32 LMT sing 247 n n 
C3 H31 LMT sing 248 n n 
C4 C5 LMT sing 249 n n 
C4 H42 LMT sing 250 n n 
C4 H41 LMT sing 251 n n 
C5 C6 LMT sing 252 n n 
C5 H52 LMT sing 253 n n 
C5 H51 LMT sing 254 n n 
C6 C7 LMT sing 255 n n 
C6 H62 LMT sing 256 n n 
C6 H61 LMT sing 257 n n 
C7 C8 LMT sing 258 n n 
C7 H72 LMT sing 259 n n 
C7 H71 LMT sing 260 n n 
C8 C9 LMT sing 261 n n 
C8 H82 LMT sing 262 n n 
C8 H81 LMT sing 263 n n 
C9 C10 LMT sing 264 n n 
C9 H92 LMT sing 265 n n 
C9 H91 LMT sing 266 n n 
C10 C11 LMT sing 267 n n 
C10 H102 LMT sing 268 n n 
C10 H101 LMT sing 269 n n 
C11 C12 LMT sing 270 n n 
C11 H112 LMT sing 271 n n 
C11 H111 LMT sing 272 n n 
C12 H123 LMT sing 273 n n 
C12 H122 LMT sing 274 n n 
C12 H121 LMT sing 275 n n 
#
_atom_sites.entry_id                     8D2X 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 ZGS A 1 601 600 ZGS ZGS . 
E 5 LMT A 1 602 1 LMT LMT . 
F 5 LMT A 1 603 3 LMT LMT . 
G 5 LMT A 1 604 4 LMT LMT . 
H 5 LMT A 1 605 5 LMT LMT . 
I 5 LMT A 1 606 6 LMT LMT . 
J 5 LMT A 1 607 7 LMT LMT . 
K 5 LMT A 1 608 8 LMT LMT . 
L 5 LMT A 1 609 9 LMT LMT . 
M 5 LMT A 1 610 10 LMT LMT . 
N 5 LMT A 1 611 11 LMT LMT . 
O 5 LMT A 1 612 12 LMT LMT . 
P 5 LMT A 1 613 13 LMT LMT . 
Q 5 LMT A 1 614 15 LMT LMT . 
R 6 HOH A 1 701 4 HOH HOH . 
R 6 HOH A 2 702 1 HOH HOH . 
R 6 HOH A 3 703 3 HOH HOH . 
R 6 HOH A 4 704 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1B LMT . . . K 5 166.137 139.965 156.106 1 49.57 ? C1B LMT 608 A 1 
HETATM 2 C C2B LMT . . . K 5 167.29 139.416 155.267 1 49.57 ? C2B LMT 608 A 1 
HETATM 3 C C3B LMT . . . K 5 166.808 138.354 154.323 1 49.57 ? C3B LMT 608 A 1 
HETATM 4 C C4B LMT . . . K 5 165.687 138.783 153.39 1 49.57 ? C4B LMT 608 A 1 
HETATM 5 C C5B LMT . . . K 5 164.818 139.923 153.904 1 49.57 ? C5B LMT 608 A 1 
HETATM 6 C C6B LMT . . . K 5 163.423 139.741 153.388 1 49.57 ? C6B LMT 608 A 1 
HETATM 7 O O1B LMT . . . K 5 166.431 141.216 156.62 1 49.57 ? O1B LMT 608 A 1 
HETATM 8 O O2B LMT . . . K 5 167.963 140.449 154.531 1 49.57 ? O2B LMT 608 A 1 
HETATM 9 O O3B LMT . . . K 5 166.354 137.234 155.096 1 49.57 ? O3B LMT 608 A 1 
HETATM 10 O O4' LMT . . . K 5 166.266 139.175 152.133 1 49.57 ? O4' LMT 608 A 1 
HETATM 11 O O5B LMT . . . K 5 164.791 140.005 155.401 1 49.57 ? O5B LMT 608 A 1 
HETATM 12 O O6B LMT . . . K 5 163.106 140.808 152.487 1 49.57 ? O6B LMT 608 A 1 
HETATM 13 C C1' LMT . . . K 5 167.316 143.474 159.542 1 49.57 ? C1' LMT 608 A 1 
HETATM 14 C C2' LMT . . . K 5 167.682 143.601 158.073 1 49.57 ? C2' LMT 608 A 1 
HETATM 15 C C3' LMT . . . K 5 168.306 142.351 157.568 1 49.57 ? C3' LMT 608 A 1 
HETATM 16 C C4' LMT . . . K 5 167.402 141.151 157.689 1 49.57 ? C4' LMT 608 A 1 
HETATM 17 C C5' LMT . . . K 5 166.727 141.061 159.073 1 49.57 ? C5' LMT 608 A 1 
HETATM 18 C C6' LMT . . . K 5 166.956 139.676 159.673 1 49.57 ? C6' LMT 608 A 1 
HETATM 19 O O1' LMT . . . K 5 168.263 144.134 160.266 1 49.57 ? O1' LMT 608 A 1 
HETATM 20 O O2' LMT . . . K 5 166.487 143.892 157.301 1 49.57 ? O2' LMT 608 A 1 
HETATM 21 O O3' LMT . . . K 5 169.518 142.101 158.331 1 49.57 ? O3' LMT 608 A 1 
HETATM 22 O O5' LMT . . . K 5 167.269 142.035 160.026 1 49.57 ? O5' LMT 608 A 1 
HETATM 23 O O6' LMT . . . K 5 168.259 139.615 160.232 1 49.57 ? O6' LMT 608 A 1 
HETATM 24 C C1 LMT . . . K 5 167.819 144.647 161.51 1 49.57 ? C1 LMT 608 A 1 
HETATM 25 C C2 LMT . . . K 5 168.698 145.856 161.884 1 49.57 ? C2 LMT 608 A 1 
HETATM 26 C C3 LMT . . . K 5 168.571 146.177 163.404 1 49.57 ? C3 LMT 608 A 1 
HETATM 27 C C4 LMT . . . K 5 169.811 146.988 163.841 1 49.57 ? C4 LMT 608 A 1 
HETATM 28 C C5 LMT . . . K 5 169.739 147.289 165.373 1 49.57 ? C5 LMT 608 A 1 
HETATM 29 C C6 LMT . . . K 5 170.488 148.617 165.656 1 49.57 ? C6 LMT 608 A 1 
HETATM 30 C C7 LMT . . . K 5 170.61 148.856 167.216 1 49.57 ? C7 LMT 608 A 1 
HETATM 31 C C8 LMT . . . K 5 171.719 149.918 167.492 1 49.57 ? C8 LMT 608 A 1 
HETATM 32 C C9 LMT . . . K 5 172.52 149.532 168.803 1 49.57 ? C9 LMT 608 A 1 
HETATM 33 C C10 LMT . . . K 5 173.893 150.23 168.786 1 49.57 ? C10 LMT 608 A 1 
HETATM 34 C C11 LMT . . . K 5 174.439 150.366 170.255 1 49.57 ? C11 LMT 608 A 1 
HETATM 35 C C12 LMT . . . K 5 175.548 151.356 170.285 1 49.57 ? C12 LMT 608 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           35 
#