data_8D2X # _model_server_result.job_id a-UrX9ybM7KLCTBCTHsruA _model_server_result.datetime_utc '2024-11-21 14:02:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d2x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":613}' # _entry.id 8D2X # _exptl.entry_id 8D2X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 510.615 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 22 B CYS 22 1_555 B SG CYS 86 B CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 B SG CYS 130 B CYS 130 1_555 B SG CYS 186 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 22 C CYS 22 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 C SG CYS 139 C CYS 139 1_555 C SG CYS 186 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 194 n n C1B O1B LMT sing 195 n n C1B O5B LMT sing 196 n n C1B H1B LMT sing 197 n n C2B C3B LMT sing 198 n n C2B O2B LMT sing 199 n n C2B H2B LMT sing 200 n n C3B C4B LMT sing 201 n n C3B O3B LMT sing 202 n n C3B H3B LMT sing 203 n n C4B C5B LMT sing 204 n n C4B O4' LMT sing 205 n n C4B H4B LMT sing 206 n n C5B C6B LMT sing 207 n n C5B O5B LMT sing 208 n n C5B H5B LMT sing 209 n n C6B O6B LMT sing 210 n n C6B "H6'2" LMT sing 211 n n C6B "H6'1" LMT sing 212 n n O1B C4' LMT sing 213 n n O2B H2O1 LMT sing 214 n n O3B H3O1 LMT sing 215 n n O4' H4O1 LMT sing 216 n n O6B H6B LMT sing 217 n n C1' C2' LMT sing 218 n n C1' O1' LMT sing 219 n n C1' O5' LMT sing 220 n n C1' H1' LMT sing 221 n n C2' C3' LMT sing 222 n n C2' O2' LMT sing 223 n n C2' H2' LMT sing 224 n n C3' C4' LMT sing 225 n n C3' O3' LMT sing 226 n n C3' H3' LMT sing 227 n n C4' C5' LMT sing 228 n n C4' H4' LMT sing 229 n n C5' C6' LMT sing 230 n n C5' O5' LMT sing 231 n n C5' H5' LMT sing 232 n n C6' O6' LMT sing 233 n n C6' H6D LMT sing 234 n n C6' H6E LMT sing 235 n n O1' C1 LMT sing 236 n n O2' H2O2 LMT sing 237 n n O3' H3O2 LMT sing 238 n n O6' H6' LMT sing 239 n n C1 C2 LMT sing 240 n n C1 H12 LMT sing 241 n n C1 H11 LMT sing 242 n n C2 C3 LMT sing 243 n n C2 H22 LMT sing 244 n n C2 H21 LMT sing 245 n n C3 C4 LMT sing 246 n n C3 H32 LMT sing 247 n n C3 H31 LMT sing 248 n n C4 C5 LMT sing 249 n n C4 H42 LMT sing 250 n n C4 H41 LMT sing 251 n n C5 C6 LMT sing 252 n n C5 H52 LMT sing 253 n n C5 H51 LMT sing 254 n n C6 C7 LMT sing 255 n n C6 H62 LMT sing 256 n n C6 H61 LMT sing 257 n n C7 C8 LMT sing 258 n n C7 H72 LMT sing 259 n n C7 H71 LMT sing 260 n n C8 C9 LMT sing 261 n n C8 H82 LMT sing 262 n n C8 H81 LMT sing 263 n n C9 C10 LMT sing 264 n n C9 H92 LMT sing 265 n n C9 H91 LMT sing 266 n n C10 C11 LMT sing 267 n n C10 H102 LMT sing 268 n n C10 H101 LMT sing 269 n n C11 C12 LMT sing 270 n n C11 H112 LMT sing 271 n n C11 H111 LMT sing 272 n n C12 H123 LMT sing 273 n n C12 H122 LMT sing 274 n n C12 H121 LMT sing 275 n n # _atom_sites.entry_id 8D2X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZGS A 1 601 600 ZGS ZGS . E 5 LMT A 1 602 1 LMT LMT . F 5 LMT A 1 603 3 LMT LMT . G 5 LMT A 1 604 4 LMT LMT . H 5 LMT A 1 605 5 LMT LMT . I 5 LMT A 1 606 6 LMT LMT . J 5 LMT A 1 607 7 LMT LMT . K 5 LMT A 1 608 8 LMT LMT . L 5 LMT A 1 609 9 LMT LMT . M 5 LMT A 1 610 10 LMT LMT . N 5 LMT A 1 611 11 LMT LMT . O 5 LMT A 1 612 12 LMT LMT . P 5 LMT A 1 613 13 LMT LMT . Q 5 LMT A 1 614 15 LMT LMT . R 6 HOH A 1 701 4 HOH HOH . R 6 HOH A 2 702 1 HOH HOH . R 6 HOH A 3 703 3 HOH HOH . R 6 HOH A 4 704 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . A . P 5 155.765 187.834 199.308 0.5 56.67 ? C1B LMT 613 A 1 HETATM 2 C C1B LMT . B . P 5 163.359 188.991 196.301 0.5 56.67 ? C1B LMT 613 A 1 HETATM 3 C C2B LMT . A . P 5 155.228 189.144 199.874 0.5 56.67 ? C2B LMT 613 A 1 HETATM 4 C C2B LMT . B . P 5 162.91 189.331 197.715 0.5 56.67 ? C2B LMT 613 A 1 HETATM 5 C C3B LMT . A . P 5 155.135 189.195 201.376 0.5 56.67 ? C3B LMT 613 A 1 HETATM 6 C C3B LMT . B . P 5 163.684 190.424 198.395 0.5 56.67 ? C3B LMT 613 A 1 HETATM 7 C C4B LMT . A . P 5 156.126 188.344 202.157 0.5 56.67 ? C4B LMT 613 A 1 HETATM 8 C C4B LMT . B . P 5 164.236 191.493 197.47 0.5 56.67 ? C4B LMT 613 A 1 HETATM 9 C C5B LMT . A . P 5 157.32 187.867 201.351 0.5 56.67 ? C5B LMT 613 A 1 HETATM 10 C C5B LMT . B . P 5 165.042 190.939 196.307 0.5 56.67 ? C5B LMT 613 A 1 HETATM 11 C C6B LMT . A . P 5 158.099 186.891 202.177 0.5 56.67 ? C6B LMT 613 A 1 HETATM 12 C C6B LMT . B . P 5 166.503 191.04 196.634 0.5 56.67 ? C6B LMT 613 A 1 HETATM 13 O O1B LMT . A . P 5 156.165 188.066 198.004 0.5 56.67 ? O1B LMT 613 A 1 HETATM 14 O O1B LMT . B . P 5 162.396 189.451 195.418 0.5 56.67 ? O1B LMT 613 A 1 HETATM 15 O O2B LMT . A . P 5 156.043 190.228 199.412 0.5 56.67 ? O2B LMT 613 A 1 HETATM 16 O O2B LMT . B . P 5 161.53 189.708 197.673 0.5 56.67 ? O2B LMT 613 A 1 HETATM 17 O O3B LMT . A . P 5 153.809 188.797 201.756 0.5 56.67 ? O3B LMT 613 A 1 HETATM 18 O O3B LMT . B . P 5 164.756 189.838 199.147 0.5 56.67 ? O3B LMT 613 A 1 HETATM 19 O O4' LMT . A . P 5 156.608 189.113 203.273 0.5 56.67 ? O4' LMT 613 A 1 HETATM 20 O O4' LMT . B . P 5 163.144 192.269 196.944 0.5 56.67 ? O4' LMT 613 A 1 HETATM 21 O O5B LMT . A . P 5 156.915 187.203 200.072 0.5 56.67 ? O5B LMT 613 A 1 HETATM 22 O O5B LMT . B . P 5 164.738 189.514 195.949 0.5 56.67 ? O5B LMT 613 A 1 HETATM 23 O O6B LMT . A . P 5 158.843 187.596 203.176 0.5 56.67 ? O6B LMT 613 A 1 HETATM 24 O O6B LMT . B . P 5 167.051 192.221 196.039 0.5 56.67 ? O6B LMT 613 A 1 HETATM 25 C C1' LMT . A . P 5 156.03 185.943 194.397 0.5 56.67 ? C1' LMT 613 A 1 HETATM 26 C C1' LMT . B . P 5 160.719 187.567 192.535 0.5 56.67 ? C1' LMT 613 A 1 HETATM 27 C C2' LMT . A . P 5 154.73 186.068 195.171 0.5 56.67 ? C2' LMT 613 A 1 HETATM 28 C C2' LMT . B . P 5 161.627 186.975 193.6 0.5 56.67 ? C2' LMT 613 A 1 HETATM 29 C C3' LMT . A . P 5 154.823 187.083 196.254 0.5 56.67 ? C3' LMT 613 A 1 HETATM 30 C C3' LMT . B . P 5 162.894 187.737 193.736 0.5 56.67 ? C3' LMT 613 A 1 HETATM 31 C C4' LMT . A . P 5 156.01 186.898 197.174 0.5 56.67 ? C4' LMT 613 A 1 HETATM 32 C C4' LMT . B . P 5 162.697 189.207 194.026 0.5 56.67 ? C4' LMT 613 A 1 HETATM 33 C C5' LMT . A . P 5 157.322 186.667 196.396 0.5 56.67 ? C5' LMT 613 A 1 HETATM 34 C C5' LMT . B . P 5 161.574 189.827 193.175 0.5 56.67 ? C5' LMT 613 A 1 HETATM 35 C C6' LMT . A . P 5 158.434 186.203 197.333 0.5 56.67 ? C6' LMT 613 A 1 HETATM 36 C C6' LMT . B . P 5 162.042 191.158 192.599 0.5 56.67 ? C6' LMT 613 A 1 HETATM 37 O O1' LMT . A . P 5 155.923 184.922 193.5 0.5 56.67 ? O1' LMT 613 A 1 HETATM 38 O O1' LMT . B . P 5 160.728 186.728 191.464 0.5 56.67 ? O1' LMT 613 A 1 HETATM 39 O O2' LMT . A . P 5 153.669 186.45 194.258 0.5 56.67 ? O2' LMT 613 A 1 HETATM 40 O O2' LMT . B . P 5 160.934 186.98 194.874 0.5 56.67 ? O2' LMT 613 A 1 HETATM 41 O O3' LMT . A . P 5 153.582 187.022 197.013 0.5 56.67 ? O3' LMT 613 A 1 HETATM 42 O O3' LMT . B . P 5 163.645 187.613 192.498 0.5 56.67 ? O3' LMT 613 A 1 HETATM 43 O O5' LMT . A . P 5 157.185 185.663 195.338 0.5 56.67 ? O5' LMT 613 A 1 HETATM 44 O O5' LMT . B . P 5 161.171 188.944 192.076 0.5 56.67 ? O5' LMT 613 A 1 HETATM 45 O O6' LMT . A . P 5 158.887 187.298 198.113 0.5 56.67 ? O6' LMT 613 A 1 HETATM 46 O O6' LMT . B . P 5 161.001 191.721 191.816 0.5 56.67 ? O6' LMT 613 A 1 HETATM 47 C C1 LMT . A . P 5 156.091 185.324 192.15 0.5 56.67 ? C1 LMT 613 A 1 HETATM 48 C C1 LMT . B . P 5 159.959 187.173 190.361 0.5 56.67 ? C1 LMT 613 A 1 HETATM 49 C C2 LMT . A . P 5 155.778 184.155 191.19 0.5 56.67 ? C2 LMT 613 A 1 HETATM 50 C C2 LMT . B . P 5 160.358 186.362 189.113 0.5 56.67 ? C2 LMT 613 A 1 HETATM 51 C C3 LMT . A . P 5 156.83 183.014 191.358 0.5 56.67 ? C3 LMT 613 A 1 HETATM 52 C C3 LMT . B . P 5 159.836 187.079 187.83 0.5 56.67 ? C3 LMT 613 A 1 HETATM 53 C C4 LMT . A . P 5 156.601 181.908 190.302 0.5 56.67 ? C4 LMT 613 A 1 HETATM 54 C C4 LMT . B . P 5 158.658 186.273 187.236 0.5 56.67 ? C4 LMT 613 A 1 HETATM 55 C C5 LMT . A . P 5 156.784 182.498 188.866 0.5 56.67 ? C5 LMT 613 A 1 HETATM 56 C C5 LMT . B . P 5 157.589 187.255 186.658 0.5 56.67 ? C5 LMT 613 A 1 HETATM 57 C C6 LMT . A . P 5 155.635 181.989 187.954 0.5 56.67 ? C6 LMT 613 A 1 HETATM 58 C C6 LMT . B . P 5 158.241 188.132 185.556 0.5 56.67 ? C6 LMT 613 A 1 HETATM 59 C C7 LMT . A . P 5 155.799 182.591 186.499 0.5 56.67 ? C7 LMT 613 A 1 HETATM 60 C C7 LMT . B . P 5 158.545 187.24 184.286 0.5 56.67 ? C7 LMT 613 A 1 HETATM 61 C C8 LMT . A . P 5 155.073 181.684 185.456 0.5 56.67 ? C8 LMT 613 A 1 HETATM 62 C C8 LMT . B . P 5 157.222 186.604 183.761 0.5 56.67 ? C8 LMT 613 A 1 HETATM 63 C C9 LMT . A . P 5 156.024 180.485 185.045 0.5 56.67 ? C9 LMT 613 A 1 HETATM 64 C C9 LMT . B . P 5 157.411 186.16 182.252 0.5 56.67 ? C9 LMT 613 A 1 HETATM 65 C C10 LMT . A . P 5 155.3 179.548 184.061 0.5 56.67 ? C10 LMT 613 A 1 HETATM 66 C C10 LMT . B . P 5 156.035 186.116 181.564 0.5 56.67 ? C10 LMT 613 A 1 HETATM 67 C C11 LMT . A . P 5 156.2 178.284 183.801 0.5 56.67 ? C11 LMT 613 A 1 HETATM 68 C C11 LMT . B . P 5 155.12 185.059 182.284 0.5 56.67 ? C11 LMT 613 A 1 HETATM 69 C C12 LMT . A . P 5 155.825 177.669 182.5 0.5 56.67 ? C12 LMT 613 A 1 HETATM 70 C C12 LMT . B . P 5 153.916 184.797 181.451 0.5 56.67 ? C12 LMT 613 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 70 #