data_8D3H # _model_server_result.job_id dUTKcZK1b5FXRLSqfr_rQA _model_server_result.datetime_utc '2024-10-15 08:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":703}' # _entry.id 8D3H # _exptl.entry_id 8D3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8D3H _cell.length_a 90.787 _cell.length_b 114.767 _cell.length_c 120.907 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 364 A ALA 440 1_555 A N CSX 365 A CSX 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSX 365 A CSX 441 1_555 A N PHE 366 A PHE 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C LYS 179 B LYS 255 1_555 B N CSX 180 B CSX 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C CSX 180 B CSX 256 1_555 B N LEU 181 B LEU 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 B C ALA 364 B ALA 440 1_555 B N CSX 365 B CSX 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C CSX 365 B CSX 441 1_555 B N PHE 366 B PHE 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 97 n n C1 C2 EDO sing 98 n n C1 H11 EDO sing 99 n n C1 H12 EDO sing 100 n n O1 HO1 EDO sing 101 n n C2 O2 EDO sing 102 n n C2 H21 EDO sing 103 n n C2 H22 EDO sing 104 n n O2 HO2 EDO sing 105 n n # _atom_sites.entry_id 8D3H _atom_sites.fract_transf_matrix[1][1] 0.011015 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008713 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAD A 1 701 702 FAD FAD . D 4 QBC A 1 702 1181 QBC D3 . E 5 EDO A 1 703 1095 EDO EDO . F 3 FAD B 1 701 701 FAD FAD . G 4 QBC B 1 702 1096 QBC D3 . H 6 HOH A 1 801 850 HOH HOH . H 6 HOH A 2 802 835 HOH HOH . H 6 HOH A 3 803 79 HOH HOH . H 6 HOH A 4 804 931 HOH HOH . H 6 HOH A 5 805 861 HOH HOH . H 6 HOH A 6 806 945 HOH HOH . H 6 HOH A 7 807 14 HOH HOH . H 6 HOH A 8 808 969 HOH HOH . H 6 HOH A 9 809 908 HOH HOH . H 6 HOH A 10 810 825 HOH HOH . H 6 HOH A 11 811 69 HOH HOH . H 6 HOH A 12 812 813 HOH HOH . H 6 HOH A 13 813 851 HOH HOH . H 6 HOH A 14 814 819 HOH HOH . H 6 HOH A 15 815 840 HOH HOH . H 6 HOH A 16 816 833 HOH HOH . H 6 HOH A 17 817 804 HOH HOH . H 6 HOH A 18 818 71 HOH HOH . H 6 HOH A 19 819 886 HOH HOH . H 6 HOH A 20 820 47 HOH HOH . H 6 HOH A 21 821 884 HOH HOH . H 6 HOH A 22 822 965 HOH HOH . H 6 HOH A 23 823 892 HOH HOH . H 6 HOH A 24 824 1001 HOH HOH . H 6 HOH A 25 825 854 HOH HOH . H 6 HOH A 26 826 74 HOH HOH . H 6 HOH A 27 827 839 HOH HOH . H 6 HOH A 28 828 6 HOH HOH . H 6 HOH A 29 829 901 HOH HOH . H 6 HOH A 30 830 909 HOH HOH . H 6 HOH A 31 831 963 HOH HOH . H 6 HOH A 32 832 873 HOH HOH . H 6 HOH A 33 833 883 HOH HOH . H 6 HOH A 34 834 894 HOH HOH . H 6 HOH A 35 835 893 HOH HOH . H 6 HOH A 36 836 911 HOH HOH . H 6 HOH A 37 837 964 HOH HOH . H 6 HOH A 38 838 978 HOH HOH . H 6 HOH A 39 839 67 HOH HOH . H 6 HOH A 40 840 874 HOH HOH . H 6 HOH A 41 841 902 HOH HOH . H 6 HOH A 42 842 919 HOH HOH . H 6 HOH A 43 843 849 HOH HOH . H 6 HOH A 44 844 937 HOH HOH . H 6 HOH A 45 845 834 HOH HOH . H 6 HOH A 46 846 820 HOH HOH . H 6 HOH A 47 847 928 HOH HOH . H 6 HOH A 48 848 918 HOH HOH . H 6 HOH A 49 849 881 HOH HOH . H 6 HOH A 50 850 952 HOH HOH . H 6 HOH A 51 851 946 HOH HOH . H 6 HOH A 52 852 1014 HOH HOH . H 6 HOH A 53 853 905 HOH HOH . H 6 HOH A 54 854 973 HOH HOH . H 6 HOH A 55 855 1018 HOH HOH . H 6 HOH A 56 856 1139 HOH HOH . H 6 HOH A 57 857 950 HOH HOH . H 6 HOH A 58 858 927 HOH HOH . H 6 HOH A 59 859 982 HOH HOH . H 6 HOH A 60 860 943 HOH HOH . H 6 HOH A 61 861 63 HOH HOH . H 6 HOH A 62 862 42 HOH HOH . H 6 HOH A 63 863 28 HOH HOH . H 6 HOH A 64 864 885 HOH HOH . H 6 HOH A 65 865 878 HOH HOH . H 6 HOH A 66 866 61 HOH HOH . H 6 HOH A 67 867 924 HOH HOH . H 6 HOH A 68 868 1048 HOH HOH . H 6 HOH A 69 869 1025 HOH HOH . H 6 HOH A 70 870 921 HOH HOH . H 6 HOH A 71 871 995 HOH HOH . H 6 HOH A 72 872 1069 HOH HOH . H 6 HOH A 73 873 1054 HOH HOH . H 6 HOH A 74 874 1133 HOH HOH . H 6 HOH A 75 875 935 HOH HOH . H 6 HOH A 76 876 22 HOH HOH . H 6 HOH A 77 877 1083 HOH HOH . H 6 HOH A 78 878 1156 HOH HOH . H 6 HOH A 79 879 15 HOH HOH . H 6 HOH A 80 880 1148 HOH HOH . H 6 HOH A 81 881 34 HOH HOH . H 6 HOH A 82 882 1149 HOH HOH . H 6 HOH A 83 883 1169 HOH HOH . H 6 HOH A 84 884 68 HOH HOH . I 6 HOH B 1 801 7 HOH HOH . I 6 HOH B 2 802 812 HOH HOH . I 6 HOH B 3 803 818 HOH HOH . I 6 HOH B 4 804 844 HOH HOH . I 6 HOH B 5 805 853 HOH HOH . I 6 HOH B 6 806 871 HOH HOH . I 6 HOH B 7 807 917 HOH HOH . I 6 HOH B 8 808 836 HOH HOH . I 6 HOH B 9 809 801 HOH HOH . I 6 HOH B 10 810 863 HOH HOH . I 6 HOH B 11 811 831 HOH HOH . I 6 HOH B 12 812 824 HOH HOH . I 6 HOH B 13 813 4 HOH HOH . I 6 HOH B 14 814 878 HOH HOH . I 6 HOH B 15 815 806 HOH HOH . I 6 HOH B 16 816 813 HOH HOH . I 6 HOH B 17 817 887 HOH HOH . I 6 HOH B 18 818 13 HOH HOH . I 6 HOH B 19 819 35 HOH HOH . I 6 HOH B 20 820 804 HOH HOH . I 6 HOH B 21 821 830 HOH HOH . I 6 HOH B 22 822 902 HOH HOH . I 6 HOH B 23 823 873 HOH HOH . I 6 HOH B 24 824 879 HOH HOH . I 6 HOH B 25 825 827 HOH HOH . I 6 HOH B 26 826 52 HOH HOH . I 6 HOH B 27 827 845 HOH HOH . I 6 HOH B 28 828 843 HOH HOH . I 6 HOH B 29 829 930 HOH HOH . I 6 HOH B 30 830 868 HOH HOH . I 6 HOH B 31 831 846 HOH HOH . I 6 HOH B 32 832 874 HOH HOH . I 6 HOH B 33 833 841 HOH HOH . I 6 HOH B 34 834 894 HOH HOH . I 6 HOH B 35 835 815 HOH HOH . I 6 HOH B 36 836 876 HOH HOH . I 6 HOH B 37 837 909 HOH HOH . I 6 HOH B 38 838 851 HOH HOH . I 6 HOH B 39 839 934 HOH HOH . I 6 HOH B 40 840 947 HOH HOH . I 6 HOH B 41 841 962 HOH HOH . I 6 HOH B 42 842 826 HOH HOH . I 6 HOH B 43 843 9 HOH HOH . I 6 HOH B 44 844 865 HOH HOH . I 6 HOH B 45 845 1011 HOH HOH . I 6 HOH B 46 846 57 HOH HOH . I 6 HOH B 47 847 73 HOH HOH . I 6 HOH B 48 848 832 HOH HOH . I 6 HOH B 49 849 937 HOH HOH . I 6 HOH B 50 850 919 HOH HOH . I 6 HOH B 51 851 911 HOH HOH . I 6 HOH B 52 852 1008 HOH HOH . I 6 HOH B 53 853 970 HOH HOH . I 6 HOH B 54 854 951 HOH HOH . I 6 HOH B 55 855 70 HOH HOH . I 6 HOH B 56 856 914 HOH HOH . I 6 HOH B 57 857 17 HOH HOH . I 6 HOH B 58 858 900 HOH HOH . I 6 HOH B 59 859 1014 HOH HOH . I 6 HOH B 60 860 54 HOH HOH . I 6 HOH B 61 861 30 HOH HOH . I 6 HOH B 62 862 886 HOH HOH . I 6 HOH B 63 863 928 HOH HOH . I 6 HOH B 64 864 1001 HOH HOH . I 6 HOH B 65 865 72 HOH HOH . I 6 HOH B 66 866 78 HOH HOH . I 6 HOH B 67 867 32 HOH HOH . I 6 HOH B 68 868 807 HOH HOH . I 6 HOH B 69 869 912 HOH HOH . I 6 HOH B 70 870 958 HOH HOH . I 6 HOH B 71 871 994 HOH HOH . I 6 HOH B 72 872 77 HOH HOH . I 6 HOH B 73 873 974 HOH HOH . I 6 HOH B 74 874 44 HOH HOH . I 6 HOH B 75 875 76 HOH HOH . I 6 HOH B 76 876 975 HOH HOH . I 6 HOH B 77 877 829 HOH HOH . I 6 HOH B 78 878 969 HOH HOH . I 6 HOH B 79 879 935 HOH HOH . I 6 HOH B 80 880 988 HOH HOH . I 6 HOH B 81 881 819 HOH HOH . I 6 HOH B 82 882 1031 HOH HOH . I 6 HOH B 83 883 1009 HOH HOH . I 6 HOH B 84 884 64 HOH HOH . I 6 HOH B 85 885 62 HOH HOH . I 6 HOH B 86 886 21 HOH HOH . I 6 HOH B 87 887 986 HOH HOH . I 6 HOH B 88 888 31 HOH HOH . I 6 HOH B 89 889 1094 HOH HOH . I 6 HOH B 90 890 23 HOH HOH . I 6 HOH B 91 891 12 HOH HOH . I 6 HOH B 92 892 51 HOH HOH . I 6 HOH B 93 893 1086 HOH HOH . I 6 HOH B 94 894 1079 HOH HOH . I 6 HOH B 95 895 60 HOH HOH . I 6 HOH B 96 896 1092 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 5 -23.194 -0.362 -37.393 1 43.73 ? C1 EDO 703 A 1 HETATM 2 O O1 EDO . . . E 5 -24.527 -0.078 -36.95 1 44.62 ? O1 EDO 703 A 1 HETATM 3 C C2 EDO . . . E 5 -22.394 0.935 -37.444 1 46.25 ? C2 EDO 703 A 1 HETATM 4 O O2 EDO . . . E 5 -22.395 1.559 -36.151 1 50.12 ? O2 EDO 703 A 1 HETATM 5 H H11 EDO . . . E 5 -23.22 -0.822 -38.383 1 52.58 ? H11 EDO 703 A 1 HETATM 6 H H12 EDO . . . E 5 -22.717 -1.067 -36.708 1 52.58 ? H12 EDO 703 A 1 HETATM 7 H HO1 EDO . . . E 5 -25.049 -0.892 -36.957 1 53.66 ? HO1 EDO 703 A 1 HETATM 8 H H21 EDO . . . E 5 -22.832 1.611 -38.18 1 55.61 ? H21 EDO 703 A 1 HETATM 9 H H22 EDO . . . E 5 -21.367 0.725 -37.751 1 55.61 ? H22 EDO 703 A 1 HETATM 10 H HO2 EDO . . . E 5 -21.89 2.382 -36.19 1 60.25 ? HO2 EDO 703 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #