data_8D3I
#
_model_server_result.job_id            VJBfnj9zxwWP1QCy4RBC9w 
_model_server_result.datetime_utc      '2024-11-28 17:40:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d3i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":702}' 
#
_entry.id    8D3I 
#
_exptl.entry_id    8D3I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8D3I 
_cell.length_a            91.062 
_cell.length_b            114.973 
_cell.length_c            122.032 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D3I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LYS 179 B LYS 255 1_555 B N CSX 180 B CSX 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 B C CSX 180 B CSX 256 1_555 B N LEU 181 B LEU 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 117 n n 
C1 C2 EDO sing 118 n n 
C1 H11 EDO sing 119 n n 
C1 H12 EDO sing 120 n n 
O1 HO1 EDO sing 121 n n 
C2 O2 EDO sing 122 n n 
C2 H21 EDO sing 123 n n 
C2 H22 EDO sing 124 n n 
O2 HO2 EDO sing 125 n n 
#
_atom_sites.entry_id                     8D3I 
_atom_sites.fract_transf_matrix[1][1]    0.010982 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008698 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008195 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 1LM A 1 701 702 1LM LIG . 
D 4 EDO A 1 702 703 EDO EDO . 
E 5 FAD A 1 703 5 FAD FAD . 
F 6 SO4 A 1 704 2 SO4 SO4 . 
G 6 SO4 A 1 705 3 SO4 SO4 . 
H 3 1LM B 1 701 701 1LM LIG . 
I 5 FAD B 1 702 4 FAD FAD . 
J 6 SO4 B 1 703 1 SO4 SO4 . 
K 7 HOH A 1 801 64 HOH HOH . 
K 7 HOH A 2 802 59 HOH HOH . 
K 7 HOH A 3 803 53 HOH HOH . 
K 7 HOH A 4 804 11 HOH HOH . 
K 7 HOH A 5 805 19 HOH HOH . 
K 7 HOH A 6 806 52 HOH HOH . 
K 7 HOH A 7 807 61 HOH HOH . 
K 7 HOH A 8 808 4 HOH HOH . 
K 7 HOH A 9 809 42 HOH HOH . 
K 7 HOH A 10 810 41 HOH HOH . 
K 7 HOH A 11 811 51 HOH HOH . 
K 7 HOH A 12 812 45 HOH HOH . 
K 7 HOH A 13 813 60 HOH HOH . 
K 7 HOH A 14 814 22 HOH HOH . 
K 7 HOH A 15 815 54 HOH HOH . 
K 7 HOH A 16 816 56 HOH HOH . 
K 7 HOH A 17 817 28 HOH HOH . 
K 7 HOH A 18 818 65 HOH HOH . 
K 7 HOH A 19 819 27 HOH HOH . 
K 7 HOH A 20 820 30 HOH HOH . 
K 7 HOH A 21 821 26 HOH HOH . 
K 7 HOH A 22 822 25 HOH HOH . 
K 7 HOH A 23 823 57 HOH HOH . 
K 7 HOH A 24 824 3 HOH HOH . 
K 7 HOH A 25 825 16 HOH HOH . 
K 7 HOH A 26 826 35 HOH HOH . 
K 7 HOH A 27 827 43 HOH HOH . 
K 7 HOH A 28 828 46 HOH HOH . 
K 7 HOH A 29 829 55 HOH HOH . 
L 7 HOH B 1 801 14 HOH HOH . 
L 7 HOH B 2 802 9 HOH HOH . 
L 7 HOH B 3 803 37 HOH HOH . 
L 7 HOH B 4 804 47 HOH HOH . 
L 7 HOH B 5 805 24 HOH HOH . 
L 7 HOH B 6 806 7 HOH HOH . 
L 7 HOH B 7 807 62 HOH HOH . 
L 7 HOH B 8 808 38 HOH HOH . 
L 7 HOH B 9 809 23 HOH HOH . 
L 7 HOH B 10 810 50 HOH HOH . 
L 7 HOH B 11 811 10 HOH HOH . 
L 7 HOH B 12 812 48 HOH HOH . 
L 7 HOH B 13 813 34 HOH HOH . 
L 7 HOH B 14 814 66 HOH HOH . 
L 7 HOH B 15 815 63 HOH HOH . 
L 7 HOH B 16 816 49 HOH HOH . 
L 7 HOH B 17 817 36 HOH HOH . 
L 7 HOH B 18 818 44 HOH HOH . 
L 7 HOH B 19 819 29 HOH HOH . 
L 7 HOH B 20 820 32 HOH HOH . 
L 7 HOH B 21 821 17 HOH HOH . 
L 7 HOH B 22 822 39 HOH HOH . 
L 7 HOH B 23 823 58 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 23.072 0.284 23.588 1 40.18 ? C1 EDO 702 A 1 
HETATM 2 O O1 EDO . . . D 4 22.454 -1.007 23.642 1 40.76 ? O1 EDO 702 A 1 
HETATM 3 C C2 EDO . . . D 4 24.571 0.135 23.814 1 40.21 ? C2 EDO 702 A 1 
HETATM 4 O O2 EDO . . . D 4 25.117 -0.737 22.815 1 49.51 ? O2 EDO 702 A 1 
HETATM 5 H H11 EDO . . . D 4 22.644 0.934 24.353 1 48.21 ? H11 EDO 702 A 1 
HETATM 6 H H12 EDO . . . D 4 22.888 0.744 22.614 1 48.21 ? H12 EDO 702 A 1 
HETATM 7 H HO1 EDO . . . D 4 21.499 -0.912 23.521 1 48.91 ? HO1 EDO 702 A 1 
HETATM 8 H H21 EDO . . . D 4 24.757 -0.276 24.809 1 48.25 ? H21 EDO 702 A 1 
HETATM 9 H H22 EDO . . . D 4 25.054 1.113 23.759 1 48.25 ? H22 EDO 702 A 1 
HETATM 10 H HO2 EDO . . . D 4 26.067 -0.841 22.963 1 59.41 ? HO2 EDO 702 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#