data_8D4K # _model_server_result.job_id TNEcmvqhne2xc80NyA0KNw _model_server_result.datetime_utc '2024-11-09 01:48:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8D4K # _exptl.entry_id 8D4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.551 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.67 _cell.angle_gamma 90 _cell.entry_id 8D4K _cell.length_a 114.549 _cell.length_b 53.111 _cell.length_c 45.643 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C21 _struct_conn.ptnr2_label_comp_id K36 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id K36 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.824 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H31 N3 O8 S' _chem_comp.formula_weight 485.551 _chem_comp.id K36 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms GC376 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 K36 sing 173 n n C21 C20 K36 sing 174 n n C20 C24 K36 sing 175 n n C20 N19 K36 sing 176 n n C24 C25 K36 sing 177 n n C26 C27 K36 sing 178 n n C26 C25 K36 sing 179 n n C27 N28 K36 sing 180 n n O18 C17 K36 doub 181 n n N19 C17 K36 sing 182 n n C25 C29 K36 sing 183 n n C29 N28 K36 sing 184 n n C29 O30 K36 doub 185 n n C17 C12 K36 sing 186 n n C13 C12 K36 sing 187 n n C13 C14 K36 sing 188 n n C12 N11 K36 sing 189 n n C15 C14 K36 sing 190 n n C14 C16 K36 sing 191 n n N11 C9 K36 sing 192 n n O10 C9 K36 doub 193 n n C9 O8 K36 sing 194 n n O8 C7 K36 sing 195 n n C7 H1 K36 sing 196 n n C7 H2 K36 sing 197 n n N11 H4 K36 sing 198 n n C12 H5 K36 sing 199 n n C13 H6 K36 sing 200 n n C13 H7 K36 sing 201 n n C14 H8 K36 sing 202 n n C15 H9 K36 sing 203 n n C15 H10 K36 sing 204 n n C15 H11 K36 sing 205 n n C16 H12 K36 sing 206 n n C16 H13 K36 sing 207 n n C16 H14 K36 sing 208 n n N19 H15 K36 sing 209 n n C20 H16 K36 sing 210 n n C21 H17 K36 sing 211 n n O22 H19 K36 sing 212 n n C24 H20 K36 sing 213 n n C24 H21 K36 sing 214 n n C25 H22 K36 sing 215 n n C26 H23 K36 sing 216 n n C26 H24 K36 sing 217 n n C27 H25 K36 sing 218 n n C27 H26 K36 sing 219 n n N28 H27 K36 sing 220 n n C7 C1 K36 sing 221 n n C1 C2 K36 sing 222 n y C2 C3 K36 doub 223 n y C3 C4 K36 sing 224 n y C4 C5 K36 doub 225 n y C5 C6 K36 sing 226 n y C6 C1 K36 doub 227 n y C21 S1 K36 sing 228 n n S1 O1 K36 doub 229 n n S1 O2 K36 doub 230 n n S1 O3 K36 sing 231 n n C2 H3 K36 sing 232 n n C3 H18 K36 sing 233 n n C4 H28 K36 sing 234 n n C5 H29 K36 sing 235 n n C6 H30 K36 sing 236 n n O3 H31 K36 sing 237 n n # _atom_sites.entry_id 8D4K _atom_sites.fract_transf_matrix[1][1] 0.00873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001962 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022456 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K36 A 1 401 401 K36 LIG . C 3 HOH A 1 501 148 HOH HOH . C 3 HOH A 2 502 161 HOH HOH . C 3 HOH A 3 503 112 HOH HOH . C 3 HOH A 4 504 162 HOH HOH . C 3 HOH A 5 505 51 HOH HOH . C 3 HOH A 6 506 8 HOH HOH . C 3 HOH A 7 507 98 HOH HOH . C 3 HOH A 8 508 164 HOH HOH . C 3 HOH A 9 509 124 HOH HOH . C 3 HOH A 10 510 94 HOH HOH . C 3 HOH A 11 511 102 HOH HOH . C 3 HOH A 12 512 117 HOH HOH . C 3 HOH A 13 513 22 HOH HOH . C 3 HOH A 14 514 35 HOH HOH . C 3 HOH A 15 515 85 HOH HOH . C 3 HOH A 16 516 140 HOH HOH . C 3 HOH A 17 517 78 HOH HOH . C 3 HOH A 18 518 149 HOH HOH . C 3 HOH A 19 519 109 HOH HOH . C 3 HOH A 20 520 71 HOH HOH . C 3 HOH A 21 521 176 HOH HOH . C 3 HOH A 22 522 143 HOH HOH . C 3 HOH A 23 523 95 HOH HOH . C 3 HOH A 24 524 74 HOH HOH . C 3 HOH A 25 525 132 HOH HOH . C 3 HOH A 26 526 14 HOH HOH . C 3 HOH A 27 527 59 HOH HOH . C 3 HOH A 28 528 17 HOH HOH . C 3 HOH A 29 529 106 HOH HOH . C 3 HOH A 30 530 96 HOH HOH . C 3 HOH A 31 531 46 HOH HOH . C 3 HOH A 32 532 119 HOH HOH . C 3 HOH A 33 533 12 HOH HOH . C 3 HOH A 34 534 4 HOH HOH . C 3 HOH A 35 535 84 HOH HOH . C 3 HOH A 36 536 62 HOH HOH . C 3 HOH A 37 537 3 HOH HOH . C 3 HOH A 38 538 77 HOH HOH . C 3 HOH A 39 539 58 HOH HOH . C 3 HOH A 40 540 63 HOH HOH . C 3 HOH A 41 541 32 HOH HOH . C 3 HOH A 42 542 107 HOH HOH . C 3 HOH A 43 543 23 HOH HOH . C 3 HOH A 44 544 128 HOH HOH . C 3 HOH A 45 545 120 HOH HOH . C 3 HOH A 46 546 108 HOH HOH . C 3 HOH A 47 547 5 HOH HOH . C 3 HOH A 48 548 11 HOH HOH . C 3 HOH A 49 549 52 HOH HOH . C 3 HOH A 50 550 154 HOH HOH . C 3 HOH A 51 551 27 HOH HOH . C 3 HOH A 52 552 147 HOH HOH . C 3 HOH A 53 553 60 HOH HOH . C 3 HOH A 54 554 69 HOH HOH . C 3 HOH A 55 555 159 HOH HOH . C 3 HOH A 56 556 145 HOH HOH . C 3 HOH A 57 557 146 HOH HOH . C 3 HOH A 58 558 91 HOH HOH . C 3 HOH A 59 559 169 HOH HOH . C 3 HOH A 60 560 67 HOH HOH . C 3 HOH A 61 561 105 HOH HOH . C 3 HOH A 62 562 18 HOH HOH . C 3 HOH A 63 563 99 HOH HOH . C 3 HOH A 64 564 73 HOH HOH . C 3 HOH A 65 565 144 HOH HOH . C 3 HOH A 66 566 57 HOH HOH . C 3 HOH A 67 567 28 HOH HOH . C 3 HOH A 68 568 43 HOH HOH . C 3 HOH A 69 569 181 HOH HOH . C 3 HOH A 70 570 24 HOH HOH . C 3 HOH A 71 571 44 HOH HOH . C 3 HOH A 72 572 82 HOH HOH . C 3 HOH A 73 573 93 HOH HOH . C 3 HOH A 74 574 37 HOH HOH . C 3 HOH A 75 575 40 HOH HOH . C 3 HOH A 76 576 2 HOH HOH . C 3 HOH A 77 577 41 HOH HOH . C 3 HOH A 78 578 183 HOH HOH . C 3 HOH A 79 579 92 HOH HOH . C 3 HOH A 80 580 113 HOH HOH . C 3 HOH A 81 581 81 HOH HOH . C 3 HOH A 82 582 133 HOH HOH . C 3 HOH A 83 583 68 HOH HOH . C 3 HOH A 84 584 47 HOH HOH . C 3 HOH A 85 585 38 HOH HOH . C 3 HOH A 86 586 129 HOH HOH . C 3 HOH A 87 587 66 HOH HOH . C 3 HOH A 88 588 131 HOH HOH . C 3 HOH A 89 589 56 HOH HOH . C 3 HOH A 90 590 114 HOH HOH . C 3 HOH A 91 591 64 HOH HOH . C 3 HOH A 92 592 31 HOH HOH . C 3 HOH A 93 593 180 HOH HOH . C 3 HOH A 94 594 111 HOH HOH . C 3 HOH A 95 595 50 HOH HOH . C 3 HOH A 96 596 151 HOH HOH . C 3 HOH A 97 597 21 HOH HOH . C 3 HOH A 98 598 118 HOH HOH . C 3 HOH A 99 599 135 HOH HOH . C 3 HOH A 100 600 76 HOH HOH . C 3 HOH A 101 601 7 HOH HOH . C 3 HOH A 102 602 110 HOH HOH . C 3 HOH A 103 603 26 HOH HOH . C 3 HOH A 104 604 6 HOH HOH . C 3 HOH A 105 605 72 HOH HOH . C 3 HOH A 106 606 1 HOH HOH . C 3 HOH A 107 607 25 HOH HOH . C 3 HOH A 108 608 65 HOH HOH . C 3 HOH A 109 609 123 HOH HOH . C 3 HOH A 110 610 103 HOH HOH . C 3 HOH A 111 611 190 HOH HOH . C 3 HOH A 112 612 142 HOH HOH . C 3 HOH A 113 613 104 HOH HOH . C 3 HOH A 114 614 79 HOH HOH . C 3 HOH A 115 615 137 HOH HOH . C 3 HOH A 116 616 61 HOH HOH . C 3 HOH A 117 617 100 HOH HOH . C 3 HOH A 118 618 55 HOH HOH . C 3 HOH A 119 619 9 HOH HOH . C 3 HOH A 120 620 20 HOH HOH . C 3 HOH A 121 621 121 HOH HOH . C 3 HOH A 122 622 134 HOH HOH . C 3 HOH A 123 623 115 HOH HOH . C 3 HOH A 124 624 16 HOH HOH . C 3 HOH A 125 625 36 HOH HOH . C 3 HOH A 126 626 125 HOH HOH . C 3 HOH A 127 627 15 HOH HOH . C 3 HOH A 128 628 13 HOH HOH . C 3 HOH A 129 629 138 HOH HOH . C 3 HOH A 130 630 116 HOH HOH . C 3 HOH A 131 631 97 HOH HOH . C 3 HOH A 132 632 70 HOH HOH . C 3 HOH A 133 633 34 HOH HOH . C 3 HOH A 134 634 10 HOH HOH . C 3 HOH A 135 635 48 HOH HOH . C 3 HOH A 136 636 141 HOH HOH . C 3 HOH A 137 637 186 HOH HOH . C 3 HOH A 138 638 177 HOH HOH . C 3 HOH A 139 639 42 HOH HOH . C 3 HOH A 140 640 30 HOH HOH . C 3 HOH A 141 641 89 HOH HOH . C 3 HOH A 142 642 83 HOH HOH . C 3 HOH A 143 643 19 HOH HOH . C 3 HOH A 144 644 101 HOH HOH . C 3 HOH A 145 645 166 HOH HOH . C 3 HOH A 146 646 174 HOH HOH . C 3 HOH A 147 647 136 HOH HOH . C 3 HOH A 148 648 39 HOH HOH . C 3 HOH A 149 649 139 HOH HOH . C 3 HOH A 150 650 182 HOH HOH . C 3 HOH A 151 651 192 HOH HOH . C 3 HOH A 152 652 152 HOH HOH . C 3 HOH A 153 653 158 HOH HOH . C 3 HOH A 154 654 150 HOH HOH . C 3 HOH A 155 655 175 HOH HOH . C 3 HOH A 156 656 187 HOH HOH . C 3 HOH A 157 657 86 HOH HOH . C 3 HOH A 158 658 178 HOH HOH . C 3 HOH A 159 659 54 HOH HOH . C 3 HOH A 160 660 49 HOH HOH . C 3 HOH A 161 661 188 HOH HOH . C 3 HOH A 162 662 167 HOH HOH . C 3 HOH A 163 663 179 HOH HOH . C 3 HOH A 164 664 163 HOH HOH . C 3 HOH A 165 665 185 HOH HOH . C 3 HOH A 166 666 75 HOH HOH . C 3 HOH A 167 667 172 HOH HOH . C 3 HOH A 168 668 33 HOH HOH . C 3 HOH A 169 669 184 HOH HOH . C 3 HOH A 170 670 160 HOH HOH . C 3 HOH A 171 671 189 HOH HOH . C 3 HOH A 172 672 88 HOH HOH . C 3 HOH A 173 673 153 HOH HOH . C 3 HOH A 174 674 171 HOH HOH . C 3 HOH A 175 675 53 HOH HOH . C 3 HOH A 176 676 126 HOH HOH . C 3 HOH A 177 677 130 HOH HOH . C 3 HOH A 178 678 165 HOH HOH . C 3 HOH A 179 679 170 HOH HOH . C 3 HOH A 180 680 87 HOH HOH . C 3 HOH A 181 681 155 HOH HOH . C 3 HOH A 182 682 191 HOH HOH . C 3 HOH A 183 683 168 HOH HOH . C 3 HOH A 184 684 45 HOH HOH . C 3 HOH A 185 685 157 HOH HOH . C 3 HOH A 186 686 156 HOH HOH . C 3 HOH A 187 687 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 K36 . . . B 2 8.965 3.702 22.237 1 37.18 ? C7 K36 401 A 1 HETATM 2 O O8 K36 . . . B 2 9.746 2.728 22.859 1 36.3 ? O8 K36 401 A 1 HETATM 3 C C9 K36 . . . B 2 10.027 1.592 22.099 1 29.11 ? C9 K36 401 A 1 HETATM 4 O O10 K36 . . . B 2 9.778 1.547 20.948 1 27.62 ? O10 K36 401 A 1 HETATM 5 C C1 K36 . . . B 2 7.486 3.495 22.555 1 41.79 ? C1 K36 401 A 1 HETATM 6 C C2 K36 . . . B 2 7.057 2.389 23.268 1 45.79 ? C2 K36 401 A 1 HETATM 7 C C3 K36 . . . B 2 5.713 2.219 23.546 1 46.61 ? C3 K36 401 A 1 HETATM 8 C C4 K36 . . . B 2 4.79 3.153 23.114 1 44.67 ? C4 K36 401 A 1 HETATM 9 C C5 K36 . . . B 2 5.215 4.258 22.404 1 43.11 ? C5 K36 401 A 1 HETATM 10 C C6 K36 . . . B 2 6.56 4.428 22.128 1 43.66 ? C6 K36 401 A 1 HETATM 11 N N11 K36 . . . B 2 10.631 0.466 22.762 1 25.27 ? N11 K36 401 A 1 HETATM 12 C C12 K36 . . . B 2 10.774 -0.789 22.077 1 24.85 ? C12 K36 401 A 1 HETATM 13 C C17 K36 . . . B 2 9.392 -1.339 21.762 1 25.96 ? C17 K36 401 A 1 HETATM 14 O O18 K36 . . . B 2 8.574 -1.385 22.602 1 25.43 ? O18 K36 401 A 1 HETATM 15 C C13 K36 . . . B 2 11.481 -1.78 22.988 1 26.3 ? C13 K36 401 A 1 HETATM 16 C C14 K36 . . . B 2 12.888 -1.291 23.31 1 28.63 ? C14 K36 401 A 1 HETATM 17 C C15 K36 . . . B 2 13.669 -1.107 22.016 1 29.15 ? C15 K36 401 A 1 HETATM 18 C C16 K36 . . . B 2 13.603 -2.313 24.185 1 30.57 ? C16 K36 401 A 1 HETATM 19 N N19 K36 . . . B 2 9.094 -1.802 20.431 1 23.34 ? N19 K36 401 A 1 HETATM 20 C C20 K36 . . . B 2 7.791 -2.35 20.129 1 23.75 ? C20 K36 401 A 1 HETATM 21 C C21 K36 . . . B 2 8.033 -3.821 19.773 1 23.51 ? C21 K36 401 A 1 HETATM 22 O O22 K36 . . . B 2 6.792 -4.478 19.495 1 26.53 ? O22 K36 401 A 1 HETATM 23 C C24 K36 . . . B 2 7.133 -1.56 18.99 1 23.54 ? C24 K36 401 A 1 HETATM 24 C C25 K36 . . . B 2 7.049 -0.037 19.327 1 26.38 ? C25 K36 401 A 1 HETATM 25 C C26 K36 . . . B 2 6.115 0.156 20.471 1 27.2 ? C26 K36 401 A 1 HETATM 26 C C27 K36 . . . B 2 5.195 1.326 20.077 1 26.67 ? C27 K36 401 A 1 HETATM 27 N N28 K36 . . . B 2 5.4 1.562 18.587 1 26.02 ? N28 K36 401 A 1 HETATM 28 C C29 K36 . . . B 2 6.534 0.729 18.139 1 24.93 ? C29 K36 401 A 1 HETATM 29 O O30 K36 . . . B 2 6.946 0.682 17.04 1 24.49 ? O30 K36 401 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #