data_8D4P # _model_server_result.job_id Ieu0Y3otGVPW9ZHvkpBY9Q _model_server_result.datetime_utc '2024-11-21 11:23:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d4p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8D4P # _exptl.entry_id 8D4P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 586.377 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloro-N-[(1R)-2-{[2-(3-fluorophenyl)ethyl]amino}-2-oxo-1-(pyridin-3-yl)ethyl]-N-[4-(pentafluoro-lambda~6~-sulfanyl)phenyl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.86 _cell.angle_gamma 90 _cell.entry_id 8D4P _cell.length_a 114.643 _cell.length_b 53.607 _cell.length_c 45.029 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D4P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C03 _struct_conn.ptnr2_label_comp_id QAO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id QAO _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.836 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H19 Cl2 F6 N3 O2 S' _chem_comp.formula_weight 586.377 _chem_comp.id QAO _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloro-N-[(1R)-2-{[2-(3-fluorophenyl)ethyl]amino}-2-oxo-1-(pyridin-3-yl)ethyl]-N-[4-(pentafluoro-lambda~6~-sulfanyl)phenyl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C23 N22 QAO doub 277 n y C23 C24 QAO sing 278 n y N22 C21 QAO sing 279 n y C24 C25 QAO doub 280 n y C21 C20 QAO doub 281 n y O01 C02 QAO doub 282 n n C25 C20 QAO sing 283 n y C20 C07 QAO sing 284 n n CL04 C03 QAO sing 285 n n C03 C02 QAO sing 286 n n C02 N06 QAO sing 287 n n O19 C08 QAO doub 288 n n N06 C07 QAO sing 289 n n N06 C26 QAO sing 290 n n C27 C26 QAO doub 291 n y C27 C28 QAO sing 292 n y C07 C08 QAO sing 293 n n C08 N09 QAO sing 294 n n C26 C29 QAO sing 295 n y C28 C31 QAO doub 296 n y F17 C16 QAO sing 297 n n C18 C16 QAO doub 298 n y C18 C12 QAO sing 299 n y F37 S32 QAO sing 300 n n C16 C15 QAO sing 301 n y C29 C30 QAO doub 302 n y C11 C12 QAO sing 303 n n C11 C10 QAO sing 304 n n N09 C10 QAO sing 305 n n C31 C30 QAO sing 306 n y C31 S32 QAO sing 307 n n C12 C13 QAO doub 308 n y F35 S32 QAO sing 309 n n C15 C14 QAO doub 310 n y S32 F34 QAO sing 311 n n S32 F33 QAO sing 312 n n S32 F36 QAO sing 313 n n C13 C14 QAO sing 314 n y C10 H1 QAO sing 315 n n C10 H2 QAO sing 316 n n C13 H3 QAO sing 317 n n C11 H4 QAO sing 318 n n C11 H5 QAO sing 319 n n C03 H6 QAO sing 320 n n C07 H8 QAO sing 321 n n N09 H9 QAO sing 322 n n C14 H10 QAO sing 323 n n C15 H11 QAO sing 324 n n C18 H12 QAO sing 325 n n C21 H13 QAO sing 326 n n C23 H14 QAO sing 327 n n C24 H15 QAO sing 328 n n C25 H16 QAO sing 329 n n C27 H17 QAO sing 330 n n C28 H18 QAO sing 331 n n C29 H19 QAO sing 332 n n C30 H20 QAO sing 333 n n C03 CL05 QAO sing 334 n n # _atom_sites.entry_id 8D4P _atom_sites.fract_transf_matrix[1][1] 0.008723 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001832 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022692 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QAO A 1 401 401 QAO UVD . C 3 HOH A 1 501 206 HOH HOH . C 3 HOH A 2 502 37 HOH HOH . C 3 HOH A 3 503 26 HOH HOH . C 3 HOH A 4 504 180 HOH HOH . C 3 HOH A 5 505 13 HOH HOH . C 3 HOH A 6 506 16 HOH HOH . C 3 HOH A 7 507 178 HOH HOH . C 3 HOH A 8 508 105 HOH HOH . C 3 HOH A 9 509 3 HOH HOH . C 3 HOH A 10 510 96 HOH HOH . C 3 HOH A 11 511 34 HOH HOH . C 3 HOH A 12 512 59 HOH HOH . C 3 HOH A 13 513 89 HOH HOH . C 3 HOH A 14 514 99 HOH HOH . C 3 HOH A 15 515 10 HOH HOH . C 3 HOH A 16 516 41 HOH HOH . C 3 HOH A 17 517 325 HOH HOH . C 3 HOH A 18 518 169 HOH HOH . C 3 HOH A 19 519 38 HOH HOH . C 3 HOH A 20 520 168 HOH HOH . C 3 HOH A 21 521 166 HOH HOH . C 3 HOH A 22 522 49 HOH HOH . C 3 HOH A 23 523 264 HOH HOH . C 3 HOH A 24 524 47 HOH HOH . C 3 HOH A 25 525 53 HOH HOH . C 3 HOH A 26 526 29 HOH HOH . C 3 HOH A 27 527 256 HOH HOH . C 3 HOH A 28 528 212 HOH HOH . C 3 HOH A 29 529 191 HOH HOH . C 3 HOH A 30 530 223 HOH HOH . C 3 HOH A 31 531 91 HOH HOH . C 3 HOH A 32 532 42 HOH HOH . C 3 HOH A 33 533 1 HOH HOH . C 3 HOH A 34 534 93 HOH HOH . C 3 HOH A 35 535 46 HOH HOH . C 3 HOH A 36 536 177 HOH HOH . C 3 HOH A 37 537 118 HOH HOH . C 3 HOH A 38 538 55 HOH HOH . C 3 HOH A 39 539 192 HOH HOH . C 3 HOH A 40 540 2 HOH HOH . C 3 HOH A 41 541 24 HOH HOH . C 3 HOH A 42 542 18 HOH HOH . C 3 HOH A 43 543 202 HOH HOH . C 3 HOH A 44 544 65 HOH HOH . C 3 HOH A 45 545 67 HOH HOH . C 3 HOH A 46 546 204 HOH HOH . C 3 HOH A 47 547 222 HOH HOH . C 3 HOH A 48 548 70 HOH HOH . C 3 HOH A 49 549 86 HOH HOH . C 3 HOH A 50 550 25 HOH HOH . C 3 HOH A 51 551 106 HOH HOH . C 3 HOH A 52 552 172 HOH HOH . C 3 HOH A 53 553 39 HOH HOH . C 3 HOH A 54 554 242 HOH HOH . C 3 HOH A 55 555 4 HOH HOH . C 3 HOH A 56 556 274 HOH HOH . C 3 HOH A 57 557 6 HOH HOH . C 3 HOH A 58 558 285 HOH HOH . C 3 HOH A 59 559 72 HOH HOH . C 3 HOH A 60 560 193 HOH HOH . C 3 HOH A 61 561 22 HOH HOH . C 3 HOH A 62 562 218 HOH HOH . C 3 HOH A 63 563 28 HOH HOH . C 3 HOH A 64 564 66 HOH HOH . C 3 HOH A 65 565 261 HOH HOH . C 3 HOH A 66 566 12 HOH HOH . C 3 HOH A 67 567 9 HOH HOH . C 3 HOH A 68 568 35 HOH HOH . C 3 HOH A 69 569 7 HOH HOH . C 3 HOH A 70 570 14 HOH HOH . C 3 HOH A 71 571 30 HOH HOH . C 3 HOH A 72 572 83 HOH HOH . C 3 HOH A 73 573 81 HOH HOH . C 3 HOH A 74 574 19 HOH HOH . C 3 HOH A 75 575 154 HOH HOH . C 3 HOH A 76 576 194 HOH HOH . C 3 HOH A 77 577 323 HOH HOH . C 3 HOH A 78 578 165 HOH HOH . C 3 HOH A 79 579 324 HOH HOH . C 3 HOH A 80 580 175 HOH HOH . C 3 HOH A 81 581 152 HOH HOH . C 3 HOH A 82 582 216 HOH HOH . C 3 HOH A 83 583 71 HOH HOH . C 3 HOH A 84 584 32 HOH HOH . C 3 HOH A 85 585 171 HOH HOH . C 3 HOH A 86 586 87 HOH HOH . C 3 HOH A 87 587 319 HOH HOH . C 3 HOH A 88 588 150 HOH HOH . C 3 HOH A 89 589 57 HOH HOH . C 3 HOH A 90 590 160 HOH HOH . C 3 HOH A 91 591 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 QAO . . . B 2 9.878 1.802 23.697 1 69.73 ? C10 QAO 401 A 1 HETATM 2 C C13 QAO . . . B 2 10.598 5.227 24.415 1 94.6 ? C13 QAO 401 A 1 HETATM 3 C C11 QAO . . . B 2 9.534 3.231 23.207 1 77.84 ? C11 QAO 401 A 1 HETATM 4 C C12 QAO . . . B 2 10.719 4.178 23.498 1 89.87 ? C12 QAO 401 A 1 HETATM 5 O O01 QAO . . . B 2 6.505 -2.681 20.001 1 56.28 ? O01 QAO 401 A 1 HETATM 6 C C02 QAO . . . B 2 7.552 -2.864 20.507 1 56.01 ? C02 QAO 401 A 1 HETATM 7 C C03 QAO . . . B 2 8.253 -4.169 20.263 1 52.3 ? C03 QAO 401 A 1 HETATM 8 CL CL04 QAO . . . B 2 7.024 -5.405 20.112 1 70.24 ? CL04 QAO 401 A 1 HETATM 9 N N06 QAO . . . B 2 8.239 -1.793 21.217 1 53.14 ? N06 QAO 401 A 1 HETATM 10 C C07 QAO . . . B 2 7.644 -0.481 21.365 1 51.72 ? C07 QAO 401 A 1 HETATM 11 C C08 QAO . . . B 2 8.701 0.539 21.834 1 54.08 ? C08 QAO 401 A 1 HETATM 12 N N09 QAO . . . B 2 8.857 0.832 23.256 1 66.06 ? N09 QAO 401 A 1 HETATM 13 C C14 QAO . . . B 2 11.686 6.067 24.661 1 92.51 ? C14 QAO 401 A 1 HETATM 14 C C15 QAO . . . B 2 12.89 5.851 23.993 1 96.84 ? C15 QAO 401 A 1 HETATM 15 C C16 QAO . . . B 2 13.014 4.802 23.076 1 95.6 ? C16 QAO 401 A 1 HETATM 16 F F17 QAO . . . B 2 14.193 4.585 22.411 1 94.14 ? F17 QAO 401 A 1 HETATM 17 C C18 QAO . . . B 2 11.927 3.965 22.833 1 95.27 ? C18 QAO 401 A 1 HETATM 18 O O19 QAO . . . B 2 9.423 1.049 21.019 1 50.88 ? O19 QAO 401 A 1 HETATM 19 C C20 QAO . . . B 2 7.078 0.045 20.047 1 43.14 ? C20 QAO 401 A 1 HETATM 20 C C21 QAO . . . B 2 7.784 -0.214 18.86 1 44.76 ? C21 QAO 401 A 1 HETATM 21 N N22 QAO . . . B 2 7.371 0.244 17.693 1 38.86 ? N22 QAO 401 A 1 HETATM 22 C C23 QAO . . . B 2 6.261 0.978 17.641 1 40.31 ? C23 QAO 401 A 1 HETATM 23 C C24 QAO . . . B 2 5.521 1.287 18.782 1 39.33 ? C24 QAO 401 A 1 HETATM 24 C C25 QAO . . . B 2 5.946 0.828 20.026 1 40.84 ? C25 QAO 401 A 1 HETATM 25 C C26 QAO . . . B 2 9.518 -1.943 21.867 1 58.14 ? C26 QAO 401 A 1 HETATM 26 C C27 QAO . . . B 2 10.72 -1.606 21.253 1 64.69 ? C27 QAO 401 A 1 HETATM 27 C C28 QAO . . . B 2 11.899 -1.731 21.983 1 71.69 ? C28 QAO 401 A 1 HETATM 28 C C29 QAO . . . B 2 9.44 -2.365 23.189 1 61.36 ? C29 QAO 401 A 1 HETATM 29 C C30 QAO . . . B 2 10.612 -2.494 23.921 1 69.69 ? C30 QAO 401 A 1 HETATM 30 C C31 QAO . . . B 2 11.838 -2.172 23.314 1 85.51 ? C31 QAO 401 A 1 HETATM 31 S S32 QAO . . . B 2 13.399 -2.321 24.263 1 104.2 ? S32 QAO 401 A 1 HETATM 32 F F33 QAO . . . B 2 12.966 -3.769 24.871 1 105.33 ? F33 QAO 401 A 1 HETATM 33 F F34 QAO . . . B 2 12.802 -0.835 24.52 1 107 ? F34 QAO 401 A 1 HETATM 34 F F35 QAO . . . B 2 14.836 -1.643 23.982 1 116.85 ? F35 QAO 401 A 1 HETATM 35 F F36 QAO . . . B 2 13.729 -2.491 25.843 1 106.92 ? F36 QAO 401 A 1 HETATM 36 F F37 QAO . . . B 2 14.11 -2.932 22.941 1 114.72 ? F37 QAO 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #