data_8D4T # _model_server_result.job_id E2XhHQclYXn-EThLPGcy8w _model_server_result.datetime_utc '2025-09-12 18:06:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":601}' # _entry.id 8D4T # _exptl.entry_id 8D4T _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 63.546 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 N N N ? 14 T N N ? 14 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 H SG CYS 22 U CYS 29 1_555 H SG CYS 57 U CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf2 H SG CYS 32 U CYS 39 1_555 H SG CYS 46 U CYS 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A C FME 1 N FME 1 1_555 A N PHE 2 N PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C FME 1 O FME 1 1_555 B N ALA 2 O ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O GLU 40 N GLU 40 1_555 P NA NA . N NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc2 A OE1 GLU 40 N GLU 40 1_555 P NA NA . N NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc3 A O GLY 45 N GLY 45 1_555 P NA NA . N NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc4 A NE2 HIS 61 N HIS 61 1_555 Q FE HEA . N HEA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc5 A ND1 HIS 240 N HIS 240 1_555 N CU CU . N CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc6 A NE2 HIS 290 N HIS 290 1_555 N CU CU . N CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc7 A NE2 HIS 291 N HIS 291 1_555 N CU CU . N CU 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc8 A OD1 ASP 369 N ASP 369 1_555 O MG MG . N MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc9 A NE2 HIS 376 N HIS 376 1_555 R FE HEA . N HEA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc10 A NE2 HIS 378 N HIS 378 1_555 Q FE HEA . N HEA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc11 A O SER 441 N SER 441 1_555 P NA NA . N NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc12 O MG MG . N MG 602 1_555 B OE1 GLU 198 O GLU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc13 B ND1 HIS 161 O HIS 161 1_555 T CU CU . O CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc14 B SG CYS 196 O CYS 196 1_555 T CU CU . O CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc15 B SG CYS 196 O CYS 196 1_555 U CU CU . O CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc16 B O GLU 198 O GLU 198 1_555 U CU CU . O CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc17 B SG CYS 200 O CYS 200 1_555 T CU CU . O CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc18 B SG CYS 200 O CYS 200 1_555 U CU CU . O CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc19 B ND1 HIS 204 O HIS 204 1_555 U CU CU . O CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc20 B SD MET 207 O MET 207 1_555 T CU CU . O CU 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc21 T CU CU . O CU 301 1_555 U CU CU . O CU 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc22 F SG CYS 57 S CYS 60 1_555 Y ZN ZN . S ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc23 F SG CYS 59 S CYS 62 1_555 Y ZN ZN . S ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc24 F SG CYS 79 S CYS 82 1_555 Y ZN ZN . S ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc25 F SG CYS 82 S CYS 85 1_555 Y ZN ZN . S ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8D4T _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 14 CU N 1 601 601 CU CU . O 15 MG N 1 602 602 MG MG . P 16 NA N 1 603 603 NA NA . Q 17 HEA N 1 604 604 HEA HEA . R 17 HEA N 1 605 605 HEA HEA . S 18 PGV N 1 606 606 PGV PGV . T 14 CU O 1 301 301 CU CU . U 14 CU O 1 302 302 CU CU . V 19 PEK P 1 301 301 PEK PEK . W 18 PGV P 1 302 302 PGV PGV . X 20 9Z9 P 1 303 303 9Z9 9Z9 . Y 21 ZN S 1 101 101 ZN ZN . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id N _atom_site.label_entity_id 14 _atom_site.Cartn_x 141.861 _atom_site.Cartn_y 140.304 _atom_site.Cartn_z 130.233 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.03 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 601 _atom_site.auth_asym_id N _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #