data_8D4Z # _model_server_result.job_id w03AyTn7zlObzBIYOKnivA _model_server_result.datetime_utc '2025-09-11 03:36:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 8D4Z # _exptl.entry_id 8D4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.7 _cell.angle_gamma 90 _cell.entry_id 8D4Z _cell.length_a 70.235 _cell.length_b 65.506 _cell.length_c 85.086 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8D4Z _atom_sites.fract_transf_matrix[1][1] 0.014238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001171 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 QBL A 1 2001 2001 QBL FAX . D 3 GOL B 1 1001 1001 GOL GOL . E 2 QBL B 1 1002 2001 QBL FAX . F 4 HOH A 1 2101 75 HOH HOH . F 4 HOH A 2 2102 33 HOH HOH . F 4 HOH A 3 2103 101 HOH HOH . F 4 HOH A 4 2104 16 HOH HOH . F 4 HOH A 5 2105 3 HOH HOH . F 4 HOH A 6 2106 50 HOH HOH . F 4 HOH A 7 2107 38 HOH HOH . F 4 HOH A 8 2108 11 HOH HOH . F 4 HOH A 9 2109 100 HOH HOH . F 4 HOH A 10 2110 47 HOH HOH . F 4 HOH A 11 2111 6 HOH HOH . F 4 HOH A 12 2112 5 HOH HOH . F 4 HOH A 13 2113 78 HOH HOH . F 4 HOH A 14 2114 1 HOH HOH . F 4 HOH A 15 2115 74 HOH HOH . F 4 HOH A 16 2116 108 HOH HOH . F 4 HOH A 17 2117 59 HOH HOH . F 4 HOH A 18 2118 4 HOH HOH . F 4 HOH A 19 2119 62 HOH HOH . F 4 HOH A 20 2120 23 HOH HOH . F 4 HOH A 21 2121 20 HOH HOH . F 4 HOH A 22 2122 109 HOH HOH . F 4 HOH A 23 2123 7 HOH HOH . F 4 HOH A 24 2124 12 HOH HOH . F 4 HOH A 25 2125 70 HOH HOH . F 4 HOH A 26 2126 94 HOH HOH . F 4 HOH A 27 2127 10 HOH HOH . F 4 HOH A 28 2128 96 HOH HOH . F 4 HOH A 29 2129 104 HOH HOH . F 4 HOH A 30 2130 55 HOH HOH . F 4 HOH A 31 2131 77 HOH HOH . F 4 HOH A 32 2132 69 HOH HOH . F 4 HOH A 33 2133 52 HOH HOH . F 4 HOH A 34 2134 93 HOH HOH . F 4 HOH A 35 2135 28 HOH HOH . F 4 HOH A 36 2136 68 HOH HOH . F 4 HOH A 37 2137 61 HOH HOH . F 4 HOH A 38 2138 18 HOH HOH . F 4 HOH A 39 2139 9 HOH HOH . F 4 HOH A 40 2140 88 HOH HOH . F 4 HOH A 41 2141 46 HOH HOH . F 4 HOH A 42 2142 99 HOH HOH . F 4 HOH A 43 2143 44 HOH HOH . F 4 HOH A 44 2144 65 HOH HOH . F 4 HOH A 45 2145 32 HOH HOH . F 4 HOH A 46 2146 8 HOH HOH . F 4 HOH A 47 2147 48 HOH HOH . F 4 HOH A 48 2148 89 HOH HOH . F 4 HOH A 49 2149 58 HOH HOH . F 4 HOH A 50 2150 2 HOH HOH . F 4 HOH A 51 2151 64 HOH HOH . F 4 HOH A 52 2152 112 HOH HOH . F 4 HOH A 53 2153 49 HOH HOH . F 4 HOH A 54 2154 87 HOH HOH . G 4 HOH B 1 1101 15 HOH HOH . G 4 HOH B 2 1102 37 HOH HOH . G 4 HOH B 3 1103 54 HOH HOH . G 4 HOH B 4 1104 84 HOH HOH . G 4 HOH B 5 1105 24 HOH HOH . G 4 HOH B 6 1106 34 HOH HOH . G 4 HOH B 7 1107 106 HOH HOH . G 4 HOH B 8 1108 57 HOH HOH . G 4 HOH B 9 1109 53 HOH HOH . G 4 HOH B 10 1110 14 HOH HOH . G 4 HOH B 11 1111 71 HOH HOH . G 4 HOH B 12 1112 95 HOH HOH . G 4 HOH B 13 1113 103 HOH HOH . G 4 HOH B 14 1114 82 HOH HOH . G 4 HOH B 15 1115 63 HOH HOH . G 4 HOH B 16 1116 29 HOH HOH . G 4 HOH B 17 1117 79 HOH HOH . G 4 HOH B 18 1118 107 HOH HOH . G 4 HOH B 19 1119 30 HOH HOH . G 4 HOH B 20 1120 36 HOH HOH . G 4 HOH B 21 1121 39 HOH HOH . G 4 HOH B 22 1122 90 HOH HOH . G 4 HOH B 23 1123 42 HOH HOH . G 4 HOH B 24 1124 41 HOH HOH . G 4 HOH B 25 1125 13 HOH HOH . G 4 HOH B 26 1126 51 HOH HOH . G 4 HOH B 27 1127 76 HOH HOH . G 4 HOH B 28 1128 45 HOH HOH . G 4 HOH B 29 1129 22 HOH HOH . G 4 HOH B 30 1130 86 HOH HOH . G 4 HOH B 31 1131 85 HOH HOH . G 4 HOH B 32 1132 40 HOH HOH . G 4 HOH B 33 1133 27 HOH HOH . G 4 HOH B 34 1134 25 HOH HOH . G 4 HOH B 35 1135 73 HOH HOH . G 4 HOH B 36 1136 98 HOH HOH . G 4 HOH B 37 1137 17 HOH HOH . G 4 HOH B 38 1138 43 HOH HOH . G 4 HOH B 39 1139 31 HOH HOH . G 4 HOH B 40 1140 26 HOH HOH . G 4 HOH B 41 1141 21 HOH HOH . G 4 HOH B 42 1142 56 HOH HOH . G 4 HOH B 43 1143 102 HOH HOH . G 4 HOH B 44 1144 97 HOH HOH . G 4 HOH B 45 1145 60 HOH HOH . G 4 HOH B 46 1146 19 HOH HOH . G 4 HOH B 47 1147 66 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -23.329 -27.948 8.827 1 100.51 ? C1 GOL 1001 B 1 HETATM 2 O O1 GOL . . . D 3 -22.372 -28.824 9.354 1 105.38 ? O1 GOL 1001 B 1 HETATM 3 C C2 GOL . . . D 3 -23.948 -28.532 7.552 1 100.89 ? C2 GOL 1001 B 1 HETATM 4 O O2 GOL . . . D 3 -24.958 -27.666 7.055 1 103.6 ? O2 GOL 1001 B 1 HETATM 5 C C3 GOL . . . D 3 -22.946 -28.754 6.415 1 100.2 ? C3 GOL 1001 B 1 HETATM 6 O O3 GOL . . . D 3 -23.657 -29.352 5.35 1 97.66 ? O3 GOL 1001 B 1 HETATM 7 H H11 GOL . . . D 3 -22.848 -26.994 8.628 1 102.51 ? H11 GOL 1001 B 1 HETATM 8 H H12 GOL . . . D 3 -24.097 -27.798 9.586 1 102.51 ? H12 GOL 1001 B 1 HETATM 9 H HO1 GOL . . . D 3 -21.99 -28.384 10.106 1 107.38 ? HO1 GOL 1001 B 1 HETATM 10 H H2 GOL . . . D 3 -24.396 -29.482 7.82 1 102.89 ? H2 GOL 1001 B 1 HETATM 11 H HO2 GOL . . . D 3 -24.649 -26.77 7.171 1 105.6 ? HO2 GOL 1001 B 1 HETATM 12 H H31 GOL . . . D 3 -22.146 -29.414 6.733 1 102.2 ? H31 GOL 1001 B 1 HETATM 13 H H32 GOL . . . D 3 -22.491 -27.815 6.095 1 102.2 ? H32 GOL 1001 B 1 HETATM 14 H HO3 GOL . . . D 3 -24.502 -28.912 5.353 1 99.66 ? HO3 GOL 1001 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #