data_8D52 # _model_server_result.job_id H8b6jAdAGfX4x7YWHymqpQ _model_server_result.datetime_utc '2025-07-30 23:58:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8D52 # _exptl.entry_id 8D52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8D52 _cell.length_a 57.383 _cell.length_b 57.383 _cell.length_c 205.208 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 A CYS 48 1_555 A SG CYS 46 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 37 A CYS 108 1_555 A SG CYS 77 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 60 A CYS 131 1_555 A SG CYS 99 A CYS 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? covale ? covale1 B C GLU 16 B GLU 30 1_555 B N QF0 17 B QF0 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C QF0 17 B QF0 31 1_555 B N HIS 18 B HIS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 B NE2 HIS 12 B HIS 26 1_555 D ZN ZN . B ZN 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 B NE2 HIS 12 B HIS 26 1_555 D ZN ZN . B ZN 101 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 D ZN ZN . B ZN 101 1_555 F O HOH . B HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc4 D ZN ZN . B ZN 101 1_555 F O HOH . B HOH 208 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8D52 _atom_sites.fract_transf_matrix[1][1] 0.017427 _atom_sites.fract_transf_matrix[1][2] 0.010061 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020123 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004873 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO A 1 201 101 EDO EDO . D 4 ZN B 1 101 1 ZN ZN . E 5 HOH A 1 301 33 HOH HOH . E 5 HOH A 2 302 3 HOH HOH . E 5 HOH A 3 303 38 HOH HOH . E 5 HOH A 4 304 22 HOH HOH . E 5 HOH A 5 305 10 HOH HOH . E 5 HOH A 6 306 9 HOH HOH . E 5 HOH A 7 307 29 HOH HOH . E 5 HOH A 8 308 19 HOH HOH . E 5 HOH A 9 309 11 HOH HOH . E 5 HOH A 10 310 6 HOH HOH . E 5 HOH A 11 311 5 HOH HOH . E 5 HOH A 12 312 26 HOH HOH . E 5 HOH A 13 313 17 HOH HOH . E 5 HOH A 14 314 15 HOH HOH . E 5 HOH A 15 315 1 HOH HOH . E 5 HOH A 16 316 4 HOH HOH . E 5 HOH A 17 317 28 HOH HOH . E 5 HOH A 18 318 37 HOH HOH . E 5 HOH A 19 319 39 HOH HOH . E 5 HOH A 20 320 41 HOH HOH . E 5 HOH A 21 321 8 HOH HOH . E 5 HOH A 22 322 12 HOH HOH . E 5 HOH A 23 323 2 HOH HOH . E 5 HOH A 24 324 34 HOH HOH . E 5 HOH A 25 325 32 HOH HOH . E 5 HOH A 26 326 36 HOH HOH . E 5 HOH A 27 327 30 HOH HOH . E 5 HOH A 28 328 27 HOH HOH . E 5 HOH A 29 329 24 HOH HOH . E 5 HOH A 30 330 20 HOH HOH . E 5 HOH A 31 331 23 HOH HOH . E 5 HOH A 32 332 18 HOH HOH . E 5 HOH A 33 333 7 HOH HOH . E 5 HOH A 34 334 25 HOH HOH . E 5 HOH A 35 335 14 HOH HOH . E 5 HOH A 36 336 31 HOH HOH . F 5 HOH B 1 201 43 HOH HOH . F 5 HOH B 2 202 16 HOH HOH . F 5 HOH B 3 203 13 HOH HOH . F 5 HOH B 4 204 35 HOH HOH . F 5 HOH B 5 205 40 HOH HOH . F 5 HOH B 6 206 42 HOH HOH . F 5 HOH B 7 207 21 HOH HOH . F 5 HOH B 8 208 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -2.683 3.723 18.617 1 67.79 ? C1 EDO 201 A 1 HETATM 2 O O1 EDO . . . C 3 -3.243 4.48 19.697 1 78.99 ? O1 EDO 201 A 1 HETATM 3 C C2 EDO . . . C 3 -1.617 2.772 19.154 1 71.88 ? C2 EDO 201 A 1 HETATM 4 O O2 EDO . . . C 3 -1.103 1.975 18.08 1 78.76 ? O2 EDO 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #