data_8D57
#
_model_server_result.job_id            ya-QK1pmbajS0_zopmdAvg 
_model_server_result.datetime_utc      '2024-12-22 02:17:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    8D57 
#
_exptl.entry_id    8D57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8D57 
_cell.length_a            79.8 
_cell.length_b            79.8 
_cell.length_c            519.13 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,G,H,I,J,M,N,O,P 1 1 
E,F,K,L,Q,R 2 1 
E,F,K,L,Q,R 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     8D57 
_atom_sites.fract_transf_matrix[1][1]    0.012531 
_atom_sites.fract_transf_matrix[1][2]    0.007235 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001926 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 CIT A 1 301 301 CIT CIT . 
H 2 CIT B 1 301 301 CIT CIT . 
I 2 CIT C 1 301 301 CIT CIT . 
J 2 CIT D 1 301 301 CIT CIT . 
K 2 CIT E 1 301 301 CIT CIT . 
L 2 CIT F 1 301 301 CIT CIT . 
M 3 HOH A 1 401 19 HOH HOH . 
M 3 HOH A 2 402 65 HOH HOH . 
M 3 HOH A 3 403 69 HOH HOH . 
M 3 HOH A 4 404 6 HOH HOH . 
M 3 HOH A 5 405 75 HOH HOH . 
M 3 HOH A 6 406 12 HOH HOH . 
M 3 HOH A 7 407 81 HOH HOH . 
M 3 HOH A 8 408 9 HOH HOH . 
M 3 HOH A 9 409 66 HOH HOH . 
M 3 HOH A 10 410 121 HOH HOH . 
M 3 HOH A 11 411 67 HOH HOH . 
M 3 HOH A 12 412 25 HOH HOH . 
M 3 HOH A 13 413 17 HOH HOH . 
M 3 HOH A 14 414 27 HOH HOH . 
M 3 HOH A 15 415 16 HOH HOH . 
M 3 HOH A 16 416 76 HOH HOH . 
M 3 HOH A 17 417 20 HOH HOH . 
M 3 HOH A 18 418 23 HOH HOH . 
M 3 HOH A 19 419 125 HOH HOH . 
M 3 HOH A 20 420 7 HOH HOH . 
M 3 HOH A 21 421 5 HOH HOH . 
M 3 HOH A 22 422 4 HOH HOH . 
M 3 HOH A 23 423 72 HOH HOH . 
M 3 HOH A 24 424 26 HOH HOH . 
M 3 HOH A 25 425 18 HOH HOH . 
M 3 HOH A 26 426 77 HOH HOH . 
M 3 HOH A 27 427 73 HOH HOH . 
M 3 HOH A 28 428 64 HOH HOH . 
M 3 HOH A 29 429 79 HOH HOH . 
M 3 HOH A 30 430 120 HOH HOH . 
M 3 HOH A 31 431 24 HOH HOH . 
M 3 HOH A 32 432 8 HOH HOH . 
N 3 HOH B 1 401 80 HOH HOH . 
N 3 HOH B 2 402 37 HOH HOH . 
N 3 HOH B 3 403 34 HOH HOH . 
N 3 HOH B 4 404 84 HOH HOH . 
N 3 HOH B 5 405 36 HOH HOH . 
N 3 HOH B 6 406 3 HOH HOH . 
N 3 HOH B 7 407 33 HOH HOH . 
N 3 HOH B 8 408 83 HOH HOH . 
O 3 HOH C 1 401 40 HOH HOH . 
O 3 HOH C 2 402 92 HOH HOH . 
O 3 HOH C 3 403 46 HOH HOH . 
O 3 HOH C 4 404 97 HOH HOH . 
O 3 HOH C 5 405 43 HOH HOH . 
O 3 HOH C 6 406 68 HOH HOH . 
O 3 HOH C 7 407 31 HOH HOH . 
O 3 HOH C 8 408 127 HOH HOH . 
O 3 HOH C 9 409 96 HOH HOH . 
O 3 HOH C 10 410 44 HOH HOH . 
O 3 HOH C 11 411 41 HOH HOH . 
O 3 HOH C 12 412 129 HOH HOH . 
O 3 HOH C 13 413 45 HOH HOH . 
O 3 HOH C 14 414 89 HOH HOH . 
O 3 HOH C 15 415 99 HOH HOH . 
O 3 HOH C 16 416 119 HOH HOH . 
O 3 HOH C 17 417 35 HOH HOH . 
O 3 HOH C 18 418 98 HOH HOH . 
O 3 HOH C 19 419 95 HOH HOH . 
P 3 HOH D 1 401 135 HOH HOH . 
P 3 HOH D 2 402 47 HOH HOH . 
P 3 HOH D 3 403 52 HOH HOH . 
P 3 HOH D 4 404 53 HOH HOH . 
P 3 HOH D 5 405 21 HOH HOH . 
P 3 HOH D 6 406 108 HOH HOH . 
P 3 HOH D 7 407 133 HOH HOH . 
P 3 HOH D 8 408 48 HOH HOH . 
P 3 HOH D 9 409 131 HOH HOH . 
P 3 HOH D 10 410 56 HOH HOH . 
P 3 HOH D 11 411 51 HOH HOH . 
P 3 HOH D 12 412 103 HOH HOH . 
P 3 HOH D 13 413 13 HOH HOH . 
P 3 HOH D 14 414 106 HOH HOH . 
P 3 HOH D 15 415 105 HOH HOH . 
P 3 HOH D 16 416 134 HOH HOH . 
P 3 HOH D 17 417 139 HOH HOH . 
P 3 HOH D 18 418 107 HOH HOH . 
Q 3 HOH E 1 401 109 HOH HOH . 
R 3 HOH F 1 401 62 HOH HOH . 
R 3 HOH F 2 402 60 HOH HOH . 
R 3 HOH F 3 403 114 HOH HOH . 
R 3 HOH F 4 404 110 HOH HOH . 
R 3 HOH F 5 405 111 HOH HOH . 
R 3 HOH F 6 406 113 HOH HOH . 
R 3 HOH F 7 407 118 HOH HOH . 
R 3 HOH F 8 408 61 HOH HOH . 
R 3 HOH F 9 409 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . G 2 -15.626 25.571 58.779 0.73 71.63 ? C1 CIT 301 A 1 
HETATM 2 O O1 CIT . . . G 2 -16.774 25.573 58.275 0.73 69.13 ? O1 CIT 301 A 1 
HETATM 3 O O2 CIT . . . G 2 -15.502 25.712 60.024 0.73 70.99 ? O2 CIT 301 A 1 
HETATM 4 C C2 CIT . . . G 2 -14.415 25.432 57.88 0.73 70.84 ? C2 CIT 301 A 1 
HETATM 5 C C3 CIT . . . G 2 -13.979 23.967 57.808 0.73 72.5 ? C3 CIT 301 A 1 
HETATM 6 O O7 CIT . . . G 2 -12.764 23.815 58.59 0.73 79.34 ? O7 CIT 301 A 1 
HETATM 7 C C4 CIT . . . G 2 -13.672 23.539 56.372 0.73 65.68 ? C4 CIT 301 A 1 
HETATM 8 C C5 CIT . . . G 2 -13.534 24.762 55.479 0.73 71.53 ? C5 CIT 301 A 1 
HETATM 9 O O3 CIT . . . G 2 -14.507 25.13 54.795 0.73 68.08 ? O3 CIT 301 A 1 
HETATM 10 O O4 CIT . . . G 2 -12.44 25.379 55.342 0.73 72.87 ? O4 CIT 301 A 1 
HETATM 11 C C6 CIT . . . G 2 -15.063 23.099 58.449 0.73 72.34 ? C6 CIT 301 A 1 
HETATM 12 O O5 CIT . . . G 2 -16.039 22.65 57.812 0.73 71.76 ? O5 CIT 301 A 1 
HETATM 13 O O6 CIT . . . G 2 -14.984 22.825 59.667 0.73 69.07 ? O6 CIT 301 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#