data_8D58
#
_model_server_result.job_id            1D1OhyMFOIBX7rOJW5mCOA 
_model_server_result.datetime_utc      '2024-11-22 22:09:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d58 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":304}' 
#
_entry.id    8D58 
#
_exptl.entry_id    8D58 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8D58 
_cell.length_a            79.495 
_cell.length_b            91.113 
_cell.length_c            122.83 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D58 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8D58 
_atom_sites.fract_transf_matrix[1][1]    0.012579 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010975 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CL A 1 301 1 CL CL . 
D 3 CL A 1 302 6 CL CL . 
E 4 IPA A 1 303 1 IPA IPA . 
F 5 GOL A 1 304 2 GOL GOL . 
G 3 CL B 1 401 2 CL CL . 
H 3 CL B 1 402 3 CL CL . 
I 3 CL B 1 403 5 CL CL . 
J 3 CL B 1 404 7 CL CL . 
K 4 IPA B 1 405 3 IPA IPA . 
L 6 HOH A 1 401 116 HOH HOH . 
L 6 HOH A 2 402 107 HOH HOH . 
L 6 HOH A 3 403 109 HOH HOH . 
L 6 HOH A 4 404 112 HOH HOH . 
L 6 HOH A 5 405 111 HOH HOH . 
L 6 HOH A 6 406 93 HOH HOH . 
L 6 HOH A 7 407 64 HOH HOH . 
L 6 HOH A 8 408 66 HOH HOH . 
L 6 HOH A 9 409 108 HOH HOH . 
L 6 HOH A 10 410 106 HOH HOH . 
L 6 HOH A 11 411 49 HOH HOH . 
L 6 HOH A 12 412 115 HOH HOH . 
L 6 HOH A 13 413 113 HOH HOH . 
L 6 HOH A 14 414 96 HOH HOH . 
L 6 HOH A 15 415 33 HOH HOH . 
L 6 HOH A 16 416 103 HOH HOH . 
L 6 HOH A 17 417 100 HOH HOH . 
L 6 HOH A 18 418 65 HOH HOH . 
L 6 HOH A 19 419 17 HOH HOH . 
M 6 HOH B 1 501 4 HOH HOH . 
M 6 HOH B 2 502 39 HOH HOH . 
M 6 HOH B 3 503 44 HOH HOH . 
M 6 HOH B 4 504 58 HOH HOH . 
M 6 HOH B 5 505 15 HOH HOH . 
M 6 HOH B 6 506 83 HOH HOH . 
M 6 HOH B 7 507 101 HOH HOH . 
M 6 HOH B 8 508 110 HOH HOH . 
M 6 HOH B 9 509 105 HOH HOH . 
M 6 HOH B 10 510 75 HOH HOH . 
M 6 HOH B 11 511 9 HOH HOH . 
M 6 HOH B 12 512 114 HOH HOH . 
M 6 HOH B 13 513 59 HOH HOH . 
M 6 HOH B 14 514 84 HOH HOH . 
M 6 HOH B 15 515 95 HOH HOH . 
M 6 HOH B 16 516 45 HOH HOH . 
M 6 HOH B 17 517 78 HOH HOH . 
M 6 HOH B 18 518 38 HOH HOH . 
M 6 HOH B 19 519 31 HOH HOH . 
M 6 HOH B 20 520 40 HOH HOH . 
M 6 HOH B 21 521 60 HOH HOH . 
M 6 HOH B 22 522 52 HOH HOH . 
M 6 HOH B 23 523 42 HOH HOH . 
M 6 HOH B 24 524 25 HOH HOH . 
M 6 HOH B 25 525 63 HOH HOH . 
M 6 HOH B 26 526 92 HOH HOH . 
M 6 HOH B 27 527 32 HOH HOH . 
M 6 HOH B 28 528 67 HOH HOH . 
M 6 HOH B 29 529 69 HOH HOH . 
M 6 HOH B 30 530 104 HOH HOH . 
M 6 HOH B 31 531 35 HOH HOH . 
M 6 HOH B 32 532 68 HOH HOH . 
M 6 HOH B 33 533 74 HOH HOH . 
M 6 HOH B 34 534 34 HOH HOH . 
M 6 HOH B 35 535 12 HOH HOH . 
M 6 HOH B 36 536 89 HOH HOH . 
M 6 HOH B 37 537 6 HOH HOH . 
M 6 HOH B 38 538 88 HOH HOH . 
M 6 HOH B 39 539 86 HOH HOH . 
M 6 HOH B 40 540 61 HOH HOH . 
M 6 HOH B 41 541 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 5 36.873 12.435 71.027 1 80.24 ? C1 GOL 304 A 1 
HETATM 2 O O1 GOL . . . F 5 37.496 11.933 69.893 1 55.41 ? O1 GOL 304 A 1 
HETATM 3 C C2 GOL . . . F 5 35.949 11.332 71.587 1 90.2 ? C2 GOL 304 A 1 
HETATM 4 O O2 GOL . . . F 5 36.522 10.07 71.516 1 99.17 ? O2 GOL 304 A 1 
HETATM 5 C C3 GOL . . . F 5 35.697 11.766 73.042 1 87.67 ? C3 GOL 304 A 1 
HETATM 6 O O3 GOL . . . F 5 35.174 10.662 73.703 1 88.93 ? O3 GOL 304 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#