data_8D5B # _model_server_result.job_id jl7FwmgUyoM0TzLyFCDgiw _model_server_result.datetime_utc '2024-11-21 18:11:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 8D5B # _exptl.entry_id 8D5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8D5B _cell.length_a 86.034 _cell.length_b 86.034 _cell.length_c 65.483 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 139 n n C1 C2 GOL sing 140 n n C1 H11 GOL sing 141 n n C1 H12 GOL sing 142 n n O1 HO1 GOL sing 143 n n C2 O2 GOL sing 144 n n C2 C3 GOL sing 145 n n C2 H2 GOL sing 146 n n O2 HO2 GOL sing 147 n n C3 O3 GOL sing 148 n n C3 H31 GOL sing 149 n n C3 H32 GOL sing 150 n n O3 HO3 GOL sing 151 n n # _atom_sites.entry_id 8D5B _atom_sites.fract_transf_matrix[1][1] 0.011623 _atom_sites.fract_transf_matrix[1][2] 0.006711 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013421 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015271 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 1 SAH SAH . C 3 SO4 A 1 302 2 SO4 SO4 . D 4 GOL A 1 303 3 GOL GOL . E 5 CL A 1 304 4 CL CL . F 6 CAC A 1 305 5 CAC CAC . G 3 SO4 A 1 306 6 SO4 SO4 . H 4 GOL A 1 307 302 GOL GOL . I 7 HOH A 1 401 188 HOH HOH . I 7 HOH A 2 402 28 HOH HOH . I 7 HOH A 3 403 186 HOH HOH . I 7 HOH A 4 404 111 HOH HOH . I 7 HOH A 5 405 71 HOH HOH . I 7 HOH A 6 406 50 HOH HOH . I 7 HOH A 7 407 76 HOH HOH . I 7 HOH A 8 408 47 HOH HOH . I 7 HOH A 9 409 94 HOH HOH . I 7 HOH A 10 410 9 HOH HOH . I 7 HOH A 11 411 98 HOH HOH . I 7 HOH A 12 412 73 HOH HOH . I 7 HOH A 13 413 8 HOH HOH . I 7 HOH A 14 414 133 HOH HOH . I 7 HOH A 15 415 115 HOH HOH . I 7 HOH A 16 416 30 HOH HOH . I 7 HOH A 17 417 53 HOH HOH . I 7 HOH A 18 418 110 HOH HOH . I 7 HOH A 19 419 44 HOH HOH . I 7 HOH A 20 420 41 HOH HOH . I 7 HOH A 21 421 77 HOH HOH . I 7 HOH A 22 422 74 HOH HOH . I 7 HOH A 23 423 2 HOH HOH . I 7 HOH A 24 424 38 HOH HOH . I 7 HOH A 25 425 90 HOH HOH . I 7 HOH A 26 426 7 HOH HOH . I 7 HOH A 27 427 118 HOH HOH . I 7 HOH A 28 428 137 HOH HOH . I 7 HOH A 29 429 27 HOH HOH . I 7 HOH A 30 430 37 HOH HOH . I 7 HOH A 31 431 59 HOH HOH . I 7 HOH A 32 432 3 HOH HOH . I 7 HOH A 33 433 17 HOH HOH . I 7 HOH A 34 434 15 HOH HOH . I 7 HOH A 35 435 10 HOH HOH . I 7 HOH A 36 436 178 HOH HOH . I 7 HOH A 37 437 60 HOH HOH . I 7 HOH A 38 438 5 HOH HOH . I 7 HOH A 39 439 39 HOH HOH . I 7 HOH A 40 440 26 HOH HOH . I 7 HOH A 41 441 33 HOH HOH . I 7 HOH A 42 442 80 HOH HOH . I 7 HOH A 43 443 72 HOH HOH . I 7 HOH A 44 444 79 HOH HOH . I 7 HOH A 45 445 19 HOH HOH . I 7 HOH A 46 446 89 HOH HOH . I 7 HOH A 47 447 177 HOH HOH . I 7 HOH A 48 448 12 HOH HOH . I 7 HOH A 49 449 55 HOH HOH . I 7 HOH A 50 450 32 HOH HOH . I 7 HOH A 51 451 4 HOH HOH . I 7 HOH A 52 452 120 HOH HOH . I 7 HOH A 53 453 11 HOH HOH . I 7 HOH A 54 454 36 HOH HOH . I 7 HOH A 55 455 189 HOH HOH . I 7 HOH A 56 456 83 HOH HOH . I 7 HOH A 57 457 40 HOH HOH . I 7 HOH A 58 458 108 HOH HOH . I 7 HOH A 59 459 31 HOH HOH . I 7 HOH A 60 460 23 HOH HOH . I 7 HOH A 61 461 35 HOH HOH . I 7 HOH A 62 462 113 HOH HOH . I 7 HOH A 63 463 104 HOH HOH . I 7 HOH A 64 464 24 HOH HOH . I 7 HOH A 65 465 48 HOH HOH . I 7 HOH A 66 466 25 HOH HOH . I 7 HOH A 67 467 54 HOH HOH . I 7 HOH A 68 468 187 HOH HOH . I 7 HOH A 69 469 29 HOH HOH . I 7 HOH A 70 470 21 HOH HOH . I 7 HOH A 71 471 57 HOH HOH . I 7 HOH A 72 472 95 HOH HOH . I 7 HOH A 73 473 190 HOH HOH . I 7 HOH A 74 474 68 HOH HOH . I 7 HOH A 75 475 136 HOH HOH . I 7 HOH A 76 476 22 HOH HOH . I 7 HOH A 77 477 87 HOH HOH . I 7 HOH A 78 478 66 HOH HOH . I 7 HOH A 79 479 6 HOH HOH . I 7 HOH A 80 480 162 HOH HOH . I 7 HOH A 81 481 141 HOH HOH . I 7 HOH A 82 482 63 HOH HOH . I 7 HOH A 83 483 52 HOH HOH . I 7 HOH A 84 484 107 HOH HOH . I 7 HOH A 85 485 146 HOH HOH . I 7 HOH A 86 486 93 HOH HOH . I 7 HOH A 87 487 45 HOH HOH . I 7 HOH A 88 488 82 HOH HOH . I 7 HOH A 89 489 179 HOH HOH . I 7 HOH A 90 490 193 HOH HOH . I 7 HOH A 91 491 18 HOH HOH . I 7 HOH A 92 492 62 HOH HOH . I 7 HOH A 93 493 97 HOH HOH . I 7 HOH A 94 494 92 HOH HOH . I 7 HOH A 95 495 16 HOH HOH . I 7 HOH A 96 496 122 HOH HOH . I 7 HOH A 97 497 14 HOH HOH . I 7 HOH A 98 498 142 HOH HOH . I 7 HOH A 99 499 119 HOH HOH . I 7 HOH A 100 500 58 HOH HOH . I 7 HOH A 101 501 81 HOH HOH . I 7 HOH A 102 502 174 HOH HOH . I 7 HOH A 103 503 65 HOH HOH . I 7 HOH A 104 504 100 HOH HOH . I 7 HOH A 105 505 176 HOH HOH . I 7 HOH A 106 506 127 HOH HOH . I 7 HOH A 107 507 103 HOH HOH . I 7 HOH A 108 508 164 HOH HOH . I 7 HOH A 109 509 99 HOH HOH . I 7 HOH A 110 510 195 HOH HOH . I 7 HOH A 111 511 85 HOH HOH . I 7 HOH A 112 512 185 HOH HOH . I 7 HOH A 113 513 191 HOH HOH . I 7 HOH A 114 514 132 HOH HOH . I 7 HOH A 115 515 88 HOH HOH . I 7 HOH A 116 516 165 HOH HOH . I 7 HOH A 117 517 126 HOH HOH . I 7 HOH A 118 518 157 HOH HOH . I 7 HOH A 119 519 84 HOH HOH . I 7 HOH A 120 520 192 HOH HOH . I 7 HOH A 121 521 91 HOH HOH . I 7 HOH A 122 522 147 HOH HOH . I 7 HOH A 123 523 144 HOH HOH . I 7 HOH A 124 524 143 HOH HOH . I 7 HOH A 125 525 194 HOH HOH . I 7 HOH A 126 526 75 HOH HOH . I 7 HOH A 127 527 78 HOH HOH . I 7 HOH A 128 528 160 HOH HOH . I 7 HOH A 129 529 170 HOH HOH . I 7 HOH A 130 530 140 HOH HOH . I 7 HOH A 131 531 155 HOH HOH . I 7 HOH A 132 532 149 HOH HOH . I 7 HOH A 133 533 148 HOH HOH . I 7 HOH A 134 534 51 HOH HOH . I 7 HOH A 135 535 117 HOH HOH . I 7 HOH A 136 536 153 HOH HOH . I 7 HOH A 137 537 69 HOH HOH . I 7 HOH A 138 538 20 HOH HOH . I 7 HOH A 139 539 46 HOH HOH . I 7 HOH A 140 540 161 HOH HOH . I 7 HOH A 141 541 134 HOH HOH . I 7 HOH A 142 542 49 HOH HOH . I 7 HOH A 143 543 106 HOH HOH . I 7 HOH A 144 544 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 -44.395 14.793 5.453 1 48.73 ? C1 GOL 307 A 1 HETATM 2 O O1 GOL . . . H 4 -44.78 15.941 4.735 1 40.21 ? O1 GOL 307 A 1 HETATM 3 C C2 GOL . . . H 4 -45.509 13.693 5.309 1 49.64 ? C2 GOL 307 A 1 HETATM 4 O O2 GOL . . . H 4 -46.798 14.229 5.306 1 62.27 ? O2 GOL 307 A 1 HETATM 5 C C3 GOL . . . H 4 -45.169 12.898 3.994 1 42.08 ? C3 GOL 307 A 1 HETATM 6 O O3 GOL . . . H 4 -46.12 11.832 3.858 1 37.1 ? O3 GOL 307 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 608 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #