data_8D5E
#
_model_server_result.job_id            YJnPMo8OXH_8_cTNLTgbqw 
_model_server_result.datetime_utc      '2024-11-21 14:21:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d5e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    8D5E 
#
_exptl.entry_id    8D5E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8D5E 
_cell.length_a            53.75 
_cell.length_b            80.59 
_cell.length_c            100.02 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D5E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 100 A CYS 101 1_555 A SG CYS 163 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf2 A SG CYS 202 A CYS 203 1_555 A SG CYS 258 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8D5E 
_atom_sites.fract_transf_matrix[1][1]    0.018605 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012408 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009998 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GOL A 1 301 301 GOL GOL . 
E 5 HOH A 1 401 27 HOH HOH . 
E 5 HOH A 2 402 135 HOH HOH . 
E 5 HOH A 3 403 23 HOH HOH . 
E 5 HOH A 4 404 8 HOH HOH . 
E 5 HOH A 5 405 63 HOH HOH . 
E 5 HOH A 6 406 130 HOH HOH . 
E 5 HOH A 7 407 29 HOH HOH . 
E 5 HOH A 8 408 10 HOH HOH . 
E 5 HOH A 9 409 5 HOH HOH . 
E 5 HOH A 10 410 101 HOH HOH . 
E 5 HOH A 11 411 15 HOH HOH . 
E 5 HOH A 12 412 77 HOH HOH . 
E 5 HOH A 13 413 6 HOH HOH . 
E 5 HOH A 14 414 14 HOH HOH . 
E 5 HOH A 15 415 22 HOH HOH . 
E 5 HOH A 16 416 1 HOH HOH . 
E 5 HOH A 17 417 11 HOH HOH . 
E 5 HOH A 18 418 128 HOH HOH . 
E 5 HOH A 19 419 116 HOH HOH . 
E 5 HOH A 20 420 117 HOH HOH . 
E 5 HOH A 21 421 36 HOH HOH . 
E 5 HOH A 22 422 46 HOH HOH . 
E 5 HOH A 23 423 58 HOH HOH . 
E 5 HOH A 24 424 20 HOH HOH . 
E 5 HOH A 25 425 4 HOH HOH . 
E 5 HOH A 26 426 89 HOH HOH . 
E 5 HOH A 27 427 118 HOH HOH . 
E 5 HOH A 28 428 3 HOH HOH . 
E 5 HOH A 29 429 2 HOH HOH . 
E 5 HOH A 30 430 47 HOH HOH . 
E 5 HOH A 31 431 13 HOH HOH . 
E 5 HOH A 32 432 12 HOH HOH . 
E 5 HOH A 33 433 21 HOH HOH . 
E 5 HOH A 34 434 19 HOH HOH . 
E 5 HOH A 35 435 150 HOH HOH . 
E 5 HOH A 36 436 31 HOH HOH . 
E 5 HOH A 37 437 35 HOH HOH . 
E 5 HOH A 38 438 37 HOH HOH . 
E 5 HOH A 39 439 64 HOH HOH . 
E 5 HOH A 40 440 25 HOH HOH . 
E 5 HOH A 41 441 151 HOH HOH . 
E 5 HOH A 42 442 107 HOH HOH . 
E 5 HOH A 43 443 76 HOH HOH . 
E 5 HOH A 44 444 18 HOH HOH . 
E 5 HOH A 45 445 66 HOH HOH . 
E 5 HOH A 46 446 17 HOH HOH . 
E 5 HOH A 47 447 103 HOH HOH . 
E 5 HOH A 48 448 127 HOH HOH . 
E 5 HOH A 49 449 133 HOH HOH . 
E 5 HOH A 50 450 149 HOH HOH . 
E 5 HOH A 51 451 24 HOH HOH . 
E 5 HOH A 52 452 48 HOH HOH . 
E 5 HOH A 53 453 155 HOH HOH . 
E 5 HOH A 54 454 147 HOH HOH . 
E 5 HOH A 55 455 98 HOH HOH . 
E 5 HOH A 56 456 39 HOH HOH . 
E 5 HOH A 57 457 153 HOH HOH . 
E 5 HOH A 58 458 55 HOH HOH . 
E 5 HOH A 59 459 86 HOH HOH . 
E 5 HOH A 60 460 141 HOH HOH . 
E 5 HOH A 61 461 83 HOH HOH . 
E 5 HOH A 62 462 159 HOH HOH . 
E 5 HOH A 63 463 126 HOH HOH . 
E 5 HOH A 64 464 26 HOH HOH . 
E 5 HOH A 65 465 132 HOH HOH . 
E 5 HOH A 66 466 51 HOH HOH . 
E 5 HOH A 67 467 69 HOH HOH . 
F 5 HOH B 1 101 123 HOH HOH . 
F 5 HOH B 2 102 16 HOH HOH . 
F 5 HOH B 3 103 70 HOH HOH . 
F 5 HOH B 4 104 30 HOH HOH . 
F 5 HOH B 5 105 157 HOH HOH . 
F 5 HOH B 6 106 158 HOH HOH . 
F 5 HOH B 7 107 44 HOH HOH . 
F 5 HOH B 8 108 108 HOH HOH . 
F 5 HOH B 9 109 112 HOH HOH . 
F 5 HOH B 10 110 82 HOH HOH . 
F 5 HOH B 11 111 34 HOH HOH . 
F 5 HOH B 12 112 7 HOH HOH . 
F 5 HOH B 13 113 104 HOH HOH . 
F 5 HOH B 14 114 54 HOH HOH . 
F 5 HOH B 15 115 100 HOH HOH . 
F 5 HOH B 16 116 152 HOH HOH . 
F 5 HOH B 17 117 93 HOH HOH . 
F 5 HOH B 18 118 9 HOH HOH . 
F 5 HOH B 19 119 59 HOH HOH . 
F 5 HOH B 20 120 156 HOH HOH . 
G 5 HOH P 1 101 50 HOH HOH . 
G 5 HOH P 2 102 38 HOH HOH . 
G 5 HOH P 3 103 49 HOH HOH . 
G 5 HOH P 4 104 32 HOH HOH . 
G 5 HOH P 5 105 68 HOH HOH . 
G 5 HOH P 6 106 60 HOH HOH . 
G 5 HOH P 7 107 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 3.316 14.429 3.655 0 53.58 0 C1 GOL 301 A 1 
HETATM 2 O O1 GOL . . . D 4 4.514 14.324 2.951 0 53.58 0 O1 GOL 301 A 1 
HETATM 3 C C2 GOL . . . D 4 2.763 12.994 3.819 0 53.58 0 C2 GOL 301 A 1 
HETATM 4 O O2 GOL . . . D 4 1.667 12.954 4.669 0 53.58 0 O2 GOL 301 A 1 
HETATM 5 C C3 GOL . . . D 4 3.95 12.174 4.363 0 53.58 0 C3 GOL 301 A 1 
HETATM 6 O O3 GOL . . . D 4 3.689 10.839 4.06 0 53.58 0 O3 GOL 301 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#