data_8D5V # _model_server_result.job_id AeS0Oqs69NA88Bh01mNUKg _model_server_result.datetime_utc '2025-07-30 20:09:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 8D5V # _exptl.entry_id 8D5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8D5V _cell.length_a 62.983 _cell.length_b 66.54 _cell.length_c 158.805 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H 1 1 C,D,F,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 34 A CYS 14 1_555 E FE1 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A SG CYS 53 A CYS 33 1_555 E FE3 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc3 A SG CYS 56 A CYS 36 1_555 E FE2 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc4 A SG CYS 62 A CYS 42 1_555 E FE4 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc5 C SG CYS 34 C CYS 14 1_555 F FE1 SF4 . C SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc6 C SG CYS 53 C CYS 33 1_555 F FE3 SF4 . C SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc7 C SG CYS 56 C CYS 36 1_555 F FE2 SF4 . C SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc8 C SG CYS 62 C CYS 42 1_555 F FE4 SF4 . C SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 290 n n FE1 S3 SF4 sing 291 n n FE1 S4 SF4 sing 292 n n FE2 S1 SF4 sing 293 n n FE2 S3 SF4 sing 294 n n FE2 S4 SF4 sing 295 n n FE3 S1 SF4 sing 296 n n FE3 S2 SF4 sing 297 n n FE3 S4 SF4 sing 298 n n FE4 S1 SF4 sing 299 n n FE4 S2 SF4 sing 300 n n FE4 S3 SF4 sing 301 n n # _atom_sites.entry_id 8D5V _atom_sites.fract_transf_matrix[1][1] 0.015877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SF4 A 1 201 201 SF4 SF4 . F 3 SF4 C 1 201 201 SF4 SF4 . G 4 HOH A 1 301 129 HOH HOH . G 4 HOH A 2 302 20 HOH HOH . G 4 HOH A 3 303 88 HOH HOH . G 4 HOH A 4 304 35 HOH HOH . G 4 HOH A 5 305 8 HOH HOH . G 4 HOH A 6 306 34 HOH HOH . G 4 HOH A 7 307 68 HOH HOH . G 4 HOH A 8 308 22 HOH HOH . G 4 HOH A 9 309 78 HOH HOH . G 4 HOH A 10 310 66 HOH HOH . G 4 HOH A 11 311 123 HOH HOH . G 4 HOH A 12 312 42 HOH HOH . G 4 HOH A 13 313 6 HOH HOH . G 4 HOH A 14 314 52 HOH HOH . G 4 HOH A 15 315 5 HOH HOH . G 4 HOH A 16 316 3 HOH HOH . G 4 HOH A 17 317 48 HOH HOH . G 4 HOH A 18 318 86 HOH HOH . G 4 HOH A 19 319 76 HOH HOH . G 4 HOH A 20 320 121 HOH HOH . G 4 HOH A 21 321 24 HOH HOH . G 4 HOH A 22 322 14 HOH HOH . G 4 HOH A 23 323 25 HOH HOH . G 4 HOH A 24 324 1 HOH HOH . G 4 HOH A 25 325 74 HOH HOH . G 4 HOH A 26 326 27 HOH HOH . G 4 HOH A 27 327 137 HOH HOH . G 4 HOH A 28 328 44 HOH HOH . G 4 HOH A 29 329 56 HOH HOH . G 4 HOH A 30 330 33 HOH HOH . G 4 HOH A 31 331 51 HOH HOH . G 4 HOH A 32 332 89 HOH HOH . G 4 HOH A 33 333 85 HOH HOH . G 4 HOH A 34 334 108 HOH HOH . G 4 HOH A 35 335 37 HOH HOH . G 4 HOH A 36 336 62 HOH HOH . G 4 HOH A 37 337 46 HOH HOH . G 4 HOH A 38 338 136 HOH HOH . G 4 HOH A 39 339 111 HOH HOH . G 4 HOH A 40 340 45 HOH HOH . G 4 HOH A 41 341 112 HOH HOH . G 4 HOH A 42 342 116 HOH HOH . G 4 HOH A 43 343 49 HOH HOH . G 4 HOH A 44 344 79 HOH HOH . G 4 HOH A 45 345 106 HOH HOH . G 4 HOH A 46 346 97 HOH HOH . G 4 HOH A 47 347 110 HOH HOH . G 4 HOH A 48 348 55 HOH HOH . G 4 HOH A 49 349 71 HOH HOH . G 4 HOH A 50 350 59 HOH HOH . H 4 HOH B 1 601 114 HOH HOH . H 4 HOH B 2 602 109 HOH HOH . H 4 HOH B 3 603 126 HOH HOH . H 4 HOH B 4 604 133 HOH HOH . H 4 HOH B 5 605 61 HOH HOH . H 4 HOH B 6 606 15 HOH HOH . H 4 HOH B 7 607 38 HOH HOH . H 4 HOH B 8 608 80 HOH HOH . H 4 HOH B 9 609 90 HOH HOH . H 4 HOH B 10 610 50 HOH HOH . H 4 HOH B 11 611 122 HOH HOH . H 4 HOH B 12 612 16 HOH HOH . H 4 HOH B 13 613 31 HOH HOH . H 4 HOH B 14 614 64 HOH HOH . H 4 HOH B 15 615 135 HOH HOH . H 4 HOH B 16 616 81 HOH HOH . H 4 HOH B 17 617 107 HOH HOH . H 4 HOH B 18 618 99 HOH HOH . H 4 HOH B 19 619 32 HOH HOH . H 4 HOH B 20 620 67 HOH HOH . H 4 HOH B 21 621 103 HOH HOH . H 4 HOH B 22 622 39 HOH HOH . H 4 HOH B 23 623 13 HOH HOH . H 4 HOH B 24 624 26 HOH HOH . H 4 HOH B 25 625 93 HOH HOH . H 4 HOH B 26 626 117 HOH HOH . H 4 HOH B 27 627 57 HOH HOH . H 4 HOH B 28 628 132 HOH HOH . H 4 HOH B 29 629 41 HOH HOH . H 4 HOH B 30 630 91 HOH HOH . H 4 HOH B 31 631 40 HOH HOH . H 4 HOH B 32 632 130 HOH HOH . H 4 HOH B 33 633 73 HOH HOH . I 4 HOH C 1 301 69 HOH HOH . I 4 HOH C 2 302 84 HOH HOH . I 4 HOH C 3 303 7 HOH HOH . I 4 HOH C 4 304 28 HOH HOH . I 4 HOH C 5 305 53 HOH HOH . I 4 HOH C 6 306 54 HOH HOH . I 4 HOH C 7 307 134 HOH HOH . I 4 HOH C 8 308 125 HOH HOH . I 4 HOH C 9 309 118 HOH HOH . I 4 HOH C 10 310 36 HOH HOH . I 4 HOH C 11 311 131 HOH HOH . I 4 HOH C 12 312 94 HOH HOH . I 4 HOH C 13 313 105 HOH HOH . I 4 HOH C 14 314 72 HOH HOH . J 4 HOH D 1 601 102 HOH HOH . J 4 HOH D 2 602 65 HOH HOH . J 4 HOH D 3 603 17 HOH HOH . J 4 HOH D 4 604 60 HOH HOH . J 4 HOH D 5 605 12 HOH HOH . J 4 HOH D 6 606 4 HOH HOH . J 4 HOH D 7 607 18 HOH HOH . J 4 HOH D 8 608 77 HOH HOH . J 4 HOH D 9 609 21 HOH HOH . J 4 HOH D 10 610 98 HOH HOH . J 4 HOH D 11 611 30 HOH HOH . J 4 HOH D 12 612 70 HOH HOH . J 4 HOH D 13 613 127 HOH HOH . J 4 HOH D 14 614 58 HOH HOH . J 4 HOH D 15 615 10 HOH HOH . J 4 HOH D 16 616 100 HOH HOH . J 4 HOH D 17 617 104 HOH HOH . J 4 HOH D 18 618 63 HOH HOH . J 4 HOH D 19 619 43 HOH HOH . J 4 HOH D 20 620 75 HOH HOH . J 4 HOH D 21 621 96 HOH HOH . J 4 HOH D 22 622 2 HOH HOH . J 4 HOH D 23 623 82 HOH HOH . J 4 HOH D 24 624 92 HOH HOH . J 4 HOH D 25 625 47 HOH HOH . J 4 HOH D 26 626 19 HOH HOH . J 4 HOH D 27 627 113 HOH HOH . J 4 HOH D 28 628 9 HOH HOH . J 4 HOH D 29 629 128 HOH HOH . J 4 HOH D 30 630 11 HOH HOH . J 4 HOH D 31 631 120 HOH HOH . J 4 HOH D 32 632 115 HOH HOH . J 4 HOH D 33 633 124 HOH HOH . J 4 HOH D 34 634 23 HOH HOH . J 4 HOH D 35 635 29 HOH HOH . J 4 HOH D 36 636 83 HOH HOH . J 4 HOH D 37 637 95 HOH HOH . J 4 HOH D 38 638 119 HOH HOH . J 4 HOH D 39 639 101 HOH HOH . J 4 HOH D 40 640 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . E 3 10.079 -2.922 34.959 1 38.32 ? FE1 SF4 201 A 1 HETATM 2 FE FE2 SF4 . . . E 3 8.606 -2.79 37.24 1 42.68 ? FE2 SF4 201 A 1 HETATM 3 FE FE3 SF4 . . . E 3 9.797 -0.552 36.253 1 33.78 ? FE3 SF4 201 A 1 HETATM 4 FE FE4 SF4 . . . E 3 11.286 -2.642 37.383 1 32.83 ? FE4 SF4 201 A 1 HETATM 5 S S1 SF4 . . . E 3 9.794 -1.226 38.472 1 37.69 ? S1 SF4 201 A 1 HETATM 6 S S2 SF4 . . . E 3 11.748 -1.428 35.424 1 35.87 ? S2 SF4 201 A 1 HETATM 7 S S3 SF4 . . . E 3 10.13 -4.442 36.735 1 37.98 ? S3 SF4 201 A 1 HETATM 8 S S4 SF4 . . . E 3 8.144 -1.749 35.218 1 37.23 ? S4 SF4 201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 8 #