data_8D5Z
#
_model_server_result.job_id            IsdkhgpmD6oQ_VcaWQrL5Q 
_model_server_result.datetime_utc      '2024-10-19 11:33:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d5z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":209}' 
#
_entry.id    8D5Z 
#
_exptl.entry_id    8D5Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8D5Z 
_cell.length_a            78.704 
_cell.length_b            78.704 
_cell.length_c            37.098 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D5Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 B NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc5 B NA NA . A NA 201 1_555 L O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc6 B NA NA . A NA 201 1_555 L O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8D5Z 
_atom_sites.fract_transf_matrix[1][1]    0.012706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 201 130 NA NA . 
C 3 CL A 1 202 131 CL CL . 
D 3 CL A 1 203 132 CL CL . 
E 3 CL A 1 204 133 CL CL . 
F 3 CL A 1 205 134 CL CL . 
G 3 CL A 1 206 135 CL CL . 
H 3 CL A 1 207 136 CL CL . 
I 3 CL A 1 208 137 CL CL . 
J 4 GOL A 1 209 138 GOL GOL . 
K 4 GOL A 1 210 139 GOL GOL . 
L 5 HOH A 1 301 97 HOH HOH . 
L 5 HOH A 2 302 108 HOH HOH . 
L 5 HOH A 3 303 71 HOH HOH . 
L 5 HOH A 4 304 41 HOH HOH . 
L 5 HOH A 5 305 88 HOH HOH . 
L 5 HOH A 6 306 80 HOH HOH . 
L 5 HOH A 7 307 72 HOH HOH . 
L 5 HOH A 8 308 58 HOH HOH . 
L 5 HOH A 9 309 105 HOH HOH . 
L 5 HOH A 10 310 36 HOH HOH . 
L 5 HOH A 11 311 51 HOH HOH . 
L 5 HOH A 12 312 101 HOH HOH . 
L 5 HOH A 13 313 74 HOH HOH . 
L 5 HOH A 14 314 43 HOH HOH . 
L 5 HOH A 15 315 31 HOH HOH . 
L 5 HOH A 16 316 3 HOH HOH . 
L 5 HOH A 17 317 22 HOH HOH . 
L 5 HOH A 18 318 66 HOH HOH . 
L 5 HOH A 19 319 68 HOH HOH . 
L 5 HOH A 20 320 96 HOH HOH . 
L 5 HOH A 21 321 79 HOH HOH . 
L 5 HOH A 22 322 9 HOH HOH . 
L 5 HOH A 23 323 94 HOH HOH . 
L 5 HOH A 24 324 39 HOH HOH . 
L 5 HOH A 25 325 23 HOH HOH . 
L 5 HOH A 26 326 81 HOH HOH . 
L 5 HOH A 27 327 6 HOH HOH . 
L 5 HOH A 28 328 14 HOH HOH . 
L 5 HOH A 29 329 7 HOH HOH . 
L 5 HOH A 30 330 50 HOH HOH . 
L 5 HOH A 31 331 54 HOH HOH . 
L 5 HOH A 32 332 17 HOH HOH . 
L 5 HOH A 33 333 27 HOH HOH . 
L 5 HOH A 34 334 90 HOH HOH . 
L 5 HOH A 35 335 45 HOH HOH . 
L 5 HOH A 36 336 33 HOH HOH . 
L 5 HOH A 37 337 56 HOH HOH . 
L 5 HOH A 38 338 32 HOH HOH . 
L 5 HOH A 39 339 62 HOH HOH . 
L 5 HOH A 40 340 85 HOH HOH . 
L 5 HOH A 41 341 52 HOH HOH . 
L 5 HOH A 42 342 13 HOH HOH . 
L 5 HOH A 43 343 18 HOH HOH . 
L 5 HOH A 44 344 53 HOH HOH . 
L 5 HOH A 45 345 65 HOH HOH . 
L 5 HOH A 46 346 47 HOH HOH . 
L 5 HOH A 47 347 61 HOH HOH . 
L 5 HOH A 48 348 20 HOH HOH . 
L 5 HOH A 49 349 49 HOH HOH . 
L 5 HOH A 50 350 5 HOH HOH . 
L 5 HOH A 51 351 26 HOH HOH . 
L 5 HOH A 52 352 75 HOH HOH . 
L 5 HOH A 53 353 28 HOH HOH . 
L 5 HOH A 54 354 4 HOH HOH . 
L 5 HOH A 55 355 55 HOH HOH . 
L 5 HOH A 56 356 10 HOH HOH . 
L 5 HOH A 57 357 12 HOH HOH . 
L 5 HOH A 58 358 29 HOH HOH . 
L 5 HOH A 59 359 64 HOH HOH . 
L 5 HOH A 60 360 16 HOH HOH . 
L 5 HOH A 61 361 104 HOH HOH . 
L 5 HOH A 62 362 30 HOH HOH . 
L 5 HOH A 63 363 35 HOH HOH . 
L 5 HOH A 64 364 93 HOH HOH . 
L 5 HOH A 65 365 95 HOH HOH . 
L 5 HOH A 66 366 19 HOH HOH . 
L 5 HOH A 67 367 69 HOH HOH . 
L 5 HOH A 68 368 103 HOH HOH . 
L 5 HOH A 69 369 57 HOH HOH . 
L 5 HOH A 70 370 1 HOH HOH . 
L 5 HOH A 71 371 76 HOH HOH . 
L 5 HOH A 72 372 15 HOH HOH . 
L 5 HOH A 73 373 40 HOH HOH . 
L 5 HOH A 74 374 63 HOH HOH . 
L 5 HOH A 75 375 48 HOH HOH . 
L 5 HOH A 76 376 60 HOH HOH . 
L 5 HOH A 77 377 25 HOH HOH . 
L 5 HOH A 78 378 34 HOH HOH . 
L 5 HOH A 79 379 11 HOH HOH . 
L 5 HOH A 80 380 24 HOH HOH . 
L 5 HOH A 81 381 83 HOH HOH . 
L 5 HOH A 82 382 21 HOH HOH . 
L 5 HOH A 83 383 2 HOH HOH . 
L 5 HOH A 84 384 8 HOH HOH . 
L 5 HOH A 85 385 78 HOH HOH . 
L 5 HOH A 86 386 37 HOH HOH . 
L 5 HOH A 87 387 42 HOH HOH . 
L 5 HOH A 88 388 44 HOH HOH . 
L 5 HOH A 89 389 109 HOH HOH . 
L 5 HOH A 90 390 100 HOH HOH . 
L 5 HOH A 91 391 98 HOH HOH . 
L 5 HOH A 92 392 73 HOH HOH . 
L 5 HOH A 93 393 102 HOH HOH . 
L 5 HOH A 94 394 67 HOH HOH . 
L 5 HOH A 95 395 99 HOH HOH . 
L 5 HOH A 96 396 92 HOH HOH . 
L 5 HOH A 97 397 89 HOH HOH . 
L 5 HOH A 98 398 87 HOH HOH . 
L 5 HOH A 99 399 38 HOH HOH . 
L 5 HOH A 100 400 106 HOH HOH . 
L 5 HOH A 101 401 86 HOH HOH . 
L 5 HOH A 102 402 91 HOH HOH . 
L 5 HOH A 103 403 46 HOH HOH . 
L 5 HOH A 104 404 77 HOH HOH . 
L 5 HOH A 105 405 111 HOH HOH . 
L 5 HOH A 106 406 70 HOH HOH . 
L 5 HOH A 107 407 107 HOH HOH . 
L 5 HOH A 108 408 82 HOH HOH . 
L 5 HOH A 109 409 84 HOH HOH . 
L 5 HOH A 110 410 110 HOH HOH . 
L 5 HOH A 111 411 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 4 28.121 -3.333 14.68 1 33.18 0 C1 GOL 209 A 1 
HETATM 2 O O1 GOL . . . J 4 27.424 -2.524 15.624 1 34.78 0 O1 GOL 209 A 1 
HETATM 3 C C2 GOL . . . J 4 29.376 -2.629 14.22 1 32.59 0 C2 GOL 209 A 1 
HETATM 4 O O2 GOL . . . J 4 30.11 -2.232 15.375 1 38.45 0 O2 GOL 209 A 1 
HETATM 5 C C3 GOL . . . J 4 30.249 -3.452 13.299 1 29.34 0 C3 GOL 209 A 1 
HETATM 6 O O3 GOL . . . J 4 31.578 -2.936 13.159 1 21.43 0 O3 GOL 209 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#