data_8D63 # _model_server_result.job_id PYwQmKEvLIwloznwxXU56w _model_server_result.datetime_utc '2024-12-21 18:41:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d63 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":401}' # _entry.id 8D63 # _exptl.entry_id 8D63 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 760.076 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8D63 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D63 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # _chem_comp.formula 'C42 H82 N O8 P' _chem_comp.formula_weight 760.076 _chem_comp.id LBN _chem_comp.mon_nstd_flag . _chem_comp.name 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 N1 LBN sing 171 n n O3 P1 LBN sing 172 n n O2 C9 LBN sing 173 n n O2 P1 LBN sing 174 n n C9 C6 LBN sing 175 n n O4 P1 LBN doub 176 n n P1 O1 LBN sing 177 n n C6 N1 LBN sing 178 n n N1 C15 LBN sing 179 n n N1 C18 LBN sing 180 n n O1 C1 LBN sing 181 n n C2 C1 LBN sing 182 n n C2 C3 LBN sing 183 n n C2 O7 LBN sing 184 n n C3 O5 LBN sing 185 n n O6 C25 LBN doub 186 n n O5 C25 LBN sing 187 n n O7 C34 LBN sing 188 n n C25 C26 LBN sing 189 n n C34 C35 LBN sing 190 n n C34 O8 LBN doub 191 n n C26 C27 LBN sing 192 n n C35 C36 LBN sing 193 n n C27 C28 LBN sing 194 n n C36 C37 LBN sing 195 n n C28 C29 LBN sing 196 n n C37 C38 LBN sing 197 n n C29 C30 LBN sing 198 n n C39 C38 LBN sing 199 n n C39 C40 LBN sing 200 n n C41 C40 LBN sing 201 n n C41 C42 LBN sing 202 n n C30 C31 LBN sing 203 n n C42 C5 LBN doub 204 z n C31 C32 LBN sing 205 n n C5 C8 LBN sing 206 n n C8 C11 LBN sing 207 n n C32 C33 LBN sing 208 n n C11 C14 LBN sing 209 n n C33 C4 LBN sing 210 n n C14 C17 LBN sing 211 n n C4 C7 LBN sing 212 n n C17 C20 LBN sing 213 n n C7 C10 LBN sing 214 n n C20 C22 LBN sing 215 n n C10 C13 LBN sing 216 n n C22 C23 LBN sing 217 n n C13 C16 LBN sing 218 n n C23 C24 LBN sing 219 n n C16 C19 LBN sing 220 n n C19 C21 LBN sing 221 n n C1 H1 LBN sing 222 n n C1 H2 LBN sing 223 n n C2 H3 LBN sing 224 n n C3 H4 LBN sing 225 n n C3 H5 LBN sing 226 n n C4 H6 LBN sing 227 n n C4 H7 LBN sing 228 n n C5 H8 LBN sing 229 n n C6 H9 LBN sing 230 n n C6 H10 LBN sing 231 n n C7 H11 LBN sing 232 n n C7 H12 LBN sing 233 n n C8 H13 LBN sing 234 n n C8 H14 LBN sing 235 n n C9 H15 LBN sing 236 n n C9 H16 LBN sing 237 n n C10 H17 LBN sing 238 n n C10 H18 LBN sing 239 n n C11 H19 LBN sing 240 n n C12 H20 LBN sing 241 n n C12 H21 LBN sing 242 n n C12 H22 LBN sing 243 n n C13 H23 LBN sing 244 n n C13 H24 LBN sing 245 n n C14 H25 LBN sing 246 n n C15 H26 LBN sing 247 n n C15 H27 LBN sing 248 n n C15 H28 LBN sing 249 n n C16 H30 LBN sing 250 n n C16 H31 LBN sing 251 n n C17 H32 LBN sing 252 n n C17 H33 LBN sing 253 n n C18 H34 LBN sing 254 n n C18 H35 LBN sing 255 n n C18 H36 LBN sing 256 n n C19 H37 LBN sing 257 n n C19 H38 LBN sing 258 n n C20 H39 LBN sing 259 n n C20 H40 LBN sing 260 n n C21 H41 LBN sing 261 n n C21 H42 LBN sing 262 n n C21 H43 LBN sing 263 n n C22 H44 LBN sing 264 n n C22 H45 LBN sing 265 n n C23 H46 LBN sing 266 n n C23 H47 LBN sing 267 n n C24 H48 LBN sing 268 n n C24 H49 LBN sing 269 n n C24 H50 LBN sing 270 n n C26 H51 LBN sing 271 n n C26 H52 LBN sing 272 n n C27 H53 LBN sing 273 n n C27 H54 LBN sing 274 n n C28 H55 LBN sing 275 n n C28 H56 LBN sing 276 n n C29 H57 LBN sing 277 n n C29 H58 LBN sing 278 n n C30 H59 LBN sing 279 n n C30 H60 LBN sing 280 n n C31 H61 LBN sing 281 n n C31 H62 LBN sing 282 n n C32 H63 LBN sing 283 n n C32 H64 LBN sing 284 n n C33 H65 LBN sing 285 n n C33 H66 LBN sing 286 n n C35 H67 LBN sing 287 n n C35 H68 LBN sing 288 n n C36 H69 LBN sing 289 n n C36 H70 LBN sing 290 n n C37 H71 LBN sing 291 n n C37 H72 LBN sing 292 n n C38 H73 LBN sing 293 n n C38 H74 LBN sing 294 n n C39 H75 LBN sing 295 n n C40 H76 LBN sing 296 n n C41 H77 LBN sing 297 n n C41 H78 LBN sing 298 n n C42 H79 LBN sing 299 n n C11 H80 LBN sing 300 n n C14 H81 LBN sing 301 n n C39 H82 LBN sing 302 n n C40 H83 LBN sing 303 n n # _atom_sites.entry_id 8D63 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LBN A 1 401 401 LBN LBN . G 2 LBN B 1 401 401 LBN LBN . H 2 LBN C 1 401 401 LBN LBN . I 2 LBN D 1 401 401 LBN LBN . J 2 LBN E 1 401 401 LBN LBN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LBN . . . I 2 87.05 119.69 80.584 1 20 ? C1 LBN 401 D 1 HETATM 2 N N1 LBN . . . I 2 85.994 120.869 86.7 1 20 ? N1 LBN 401 D 1 HETATM 3 P P1 LBN . . . I 2 88.526 120.883 82.45 1 20 ? P1 LBN 401 D 1 HETATM 4 C C2 LBN . . . I 2 87.195 119.362 79.07 1 20 ? C2 LBN 401 D 1 HETATM 5 C C3 LBN . . . I 2 86.01 118.518 78.523 1 20 ? C3 LBN 401 D 1 HETATM 6 C C4 LBN . . . I 2 83.391 120.64 66.03 1 20 ? C4 LBN 401 D 1 HETATM 7 C C5 LBN . . . I 2 86.816 123.534 67.353 1 20 ? C5 LBN 401 D 1 HETATM 8 C C6 LBN . . . I 2 86.093 120.528 85.248 1 20 ? C6 LBN 401 D 1 HETATM 9 O O1 LBN . . . I 2 87.923 120.766 80.893 1 20 ? O1 LBN 401 D 1 HETATM 10 C C7 LBN . . . I 2 83.722 121.009 64.555 1 20 ? C7 LBN 401 D 1 HETATM 11 C C8 LBN . . . I 2 86.774 124.448 66.1 1 20 ? C8 LBN 401 D 1 HETATM 12 C C9 LBN . . . I 2 87.567 120.262 84.856 1 20 ? C9 LBN 401 D 1 HETATM 13 O O2 LBN . . . I 2 87.612 119.927 83.473 1 20 ? O2 LBN 401 D 1 HETATM 14 C C10 LBN . . . I 2 82.653 120.476 63.558 1 20 ? C10 LBN 401 D 1 HETATM 15 C C11 LBN . . . I 2 85.614 124.078 65.137 1 20 ? C11 LBN 401 D 1 HETATM 16 C C12 LBN . . . I 2 84.581 120.961 87.086 1 20 ? C12 LBN 401 D 1 HETATM 17 O O3 LBN . . . I 2 88.459 122.321 82.911 1 20 ? O3 LBN 401 D 1 HETATM 18 C C13 LBN . . . I 2 82.924 120.936 62.1 1 20 ? C13 LBN 401 D 1 HETATM 19 C C14 LBN . . . I 2 84.625 125.263 64.919 1 20 ? C14 LBN 401 D 1 HETATM 20 C C15 LBN . . . I 2 86.654 122.158 86.946 1 20 ? C15 LBN 401 D 1 HETATM 21 O O4 LBN . . . I 2 89.959 120.415 82.469 1 20 ? O4 LBN 401 D 1 HETATM 22 C C16 LBN . . . I 2 81.656 120.857 61.211 1 20 ? C16 LBN 401 D 1 HETATM 23 C C17 LBN . . . I 2 83.23 124.994 65.56 1 20 ? C17 LBN 401 D 1 HETATM 24 C C18 LBN . . . I 2 86.657 119.815 87.5 1 20 ? C18 LBN 401 D 1 HETATM 25 C C19 LBN . . . I 2 81.846 119.914 59.997 1 20 ? C19 LBN 401 D 1 HETATM 26 C C20 LBN . . . I 2 82.706 126.218 66.375 1 20 ? C20 LBN 401 D 1 HETATM 27 C C21 LBN . . . I 2 80.506 119.361 59.471 1 20 ? C21 LBN 401 D 1 HETATM 28 C C22 LBN . . . I 2 81.167 126.395 66.248 1 20 ? C22 LBN 401 D 1 HETATM 29 C C23 LBN . . . I 2 80.776 127.322 65.072 1 20 ? C23 LBN 401 D 1 HETATM 30 C C24 LBN . . . I 2 79.256 127.519 64.966 1 20 ? C24 LBN 401 D 1 HETATM 31 C C25 LBN . . . I 2 85.161 117.68 76.474 1 20 ? C25 LBN 401 D 1 HETATM 32 O O5 LBN . . . I 2 86.007 118.614 77.116 1 20 ? O5 LBN 401 D 1 HETATM 33 C C26 LBN . . . I 2 85.42 117.291 75.006 1 20 ? C26 LBN 401 D 1 HETATM 34 O O6 LBN . . . I 2 84.254 117.197 77.062 1 20 ? O6 LBN 401 D 1 HETATM 35 C C27 LBN . . . I 2 84.453 117.998 74.033 1 20 ? C27 LBN 401 D 1 HETATM 36 C C28 LBN . . . I 2 85.195 118.91 73.027 1 20 ? C28 LBN 401 D 1 HETATM 37 C C29 LBN . . . I 2 84.283 119.335 71.824 1 20 ? C29 LBN 401 D 1 HETATM 38 C C30 LBN . . . I 2 85 120.343 70.857 1 20 ? C30 LBN 401 D 1 HETATM 39 C C31 LBN . . . I 2 85.101 119.793 69.383 1 20 ? C31 LBN 401 D 1 HETATM 40 C C32 LBN . . . I 2 84.615 120.845 68.316 1 20 ? C32 LBN 401 D 1 HETATM 41 C C33 LBN . . . I 2 84.671 120.281 66.856 1 20 ? C33 LBN 401 D 1 HETATM 42 C C34 LBN . . . I 2 88.246 120.671 77.356 1 20 ? C34 LBN 401 D 1 HETATM 43 O O7 LBN . . . I 2 87.226 120.603 78.35 1 20 ? O7 LBN 401 D 1 HETATM 44 C C35 LBN . . . I 2 87.857 120.736 75.838 1 20 ? C35 LBN 401 D 1 HETATM 45 O O8 LBN . . . I 2 89.391 120.678 77.677 1 20 ? O8 LBN 401 D 1 HETATM 46 C C36 LBN . . . I 2 89.08 121.062 74.927 1 20 ? C36 LBN 401 D 1 HETATM 47 C C37 LBN . . . I 2 88.703 121.067 73.405 1 20 ? C37 LBN 401 D 1 HETATM 48 C C38 LBN . . . I 2 89.717 121.884 72.547 1 20 ? C38 LBN 401 D 1 HETATM 49 C C39 LBN . . . I 2 89.649 121.51 71.032 1 20 ? C39 LBN 401 D 1 HETATM 50 C C40 LBN . . . I 2 89.189 122.706 70.151 1 20 ? C40 LBN 401 D 1 HETATM 51 C C41 LBN . . . I 2 88.038 122.32 69.182 1 20 ? C41 LBN 401 D 1 HETATM 52 C C42 LBN . . . I 2 87.993 123.237 67.926 1 20 ? C42 LBN 401 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 52 #