data_8D63
#
_model_server_result.job_id            Ll3U7oLru5I4SM9SnfdoBg 
_model_server_result.datetime_utc      '2024-12-21 17:54:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8d63 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    8D63 
#
_exptl.entry_id    8D63 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              760.076 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8D63 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8D63 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
_chem_comp.formula           'C42 H82 N O8 P' 
_chem_comp.formula_weight    760.076 
_chem_comp.id                LBN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '(2R)-2-[(9Z)-9-Octadecenoyloxy]-3-(palmitoyloxy)propyl 2-(trimethylammonio)ethyl phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 N1 LBN sing 171 n n 
O3 P1 LBN sing 172 n n 
O2 C9 LBN sing 173 n n 
O2 P1 LBN sing 174 n n 
C9 C6 LBN sing 175 n n 
O4 P1 LBN doub 176 n n 
P1 O1 LBN sing 177 n n 
C6 N1 LBN sing 178 n n 
N1 C15 LBN sing 179 n n 
N1 C18 LBN sing 180 n n 
O1 C1 LBN sing 181 n n 
C2 C1 LBN sing 182 n n 
C2 C3 LBN sing 183 n n 
C2 O7 LBN sing 184 n n 
C3 O5 LBN sing 185 n n 
O6 C25 LBN doub 186 n n 
O5 C25 LBN sing 187 n n 
O7 C34 LBN sing 188 n n 
C25 C26 LBN sing 189 n n 
C34 C35 LBN sing 190 n n 
C34 O8 LBN doub 191 n n 
C26 C27 LBN sing 192 n n 
C35 C36 LBN sing 193 n n 
C27 C28 LBN sing 194 n n 
C36 C37 LBN sing 195 n n 
C28 C29 LBN sing 196 n n 
C37 C38 LBN sing 197 n n 
C29 C30 LBN sing 198 n n 
C39 C38 LBN sing 199 n n 
C39 C40 LBN sing 200 n n 
C41 C40 LBN sing 201 n n 
C41 C42 LBN sing 202 n n 
C30 C31 LBN sing 203 n n 
C42 C5 LBN doub 204 z n 
C31 C32 LBN sing 205 n n 
C5 C8 LBN sing 206 n n 
C8 C11 LBN sing 207 n n 
C32 C33 LBN sing 208 n n 
C11 C14 LBN sing 209 n n 
C33 C4 LBN sing 210 n n 
C14 C17 LBN sing 211 n n 
C4 C7 LBN sing 212 n n 
C17 C20 LBN sing 213 n n 
C7 C10 LBN sing 214 n n 
C20 C22 LBN sing 215 n n 
C10 C13 LBN sing 216 n n 
C22 C23 LBN sing 217 n n 
C13 C16 LBN sing 218 n n 
C23 C24 LBN sing 219 n n 
C16 C19 LBN sing 220 n n 
C19 C21 LBN sing 221 n n 
C1 H1 LBN sing 222 n n 
C1 H2 LBN sing 223 n n 
C2 H3 LBN sing 224 n n 
C3 H4 LBN sing 225 n n 
C3 H5 LBN sing 226 n n 
C4 H6 LBN sing 227 n n 
C4 H7 LBN sing 228 n n 
C5 H8 LBN sing 229 n n 
C6 H9 LBN sing 230 n n 
C6 H10 LBN sing 231 n n 
C7 H11 LBN sing 232 n n 
C7 H12 LBN sing 233 n n 
C8 H13 LBN sing 234 n n 
C8 H14 LBN sing 235 n n 
C9 H15 LBN sing 236 n n 
C9 H16 LBN sing 237 n n 
C10 H17 LBN sing 238 n n 
C10 H18 LBN sing 239 n n 
C11 H19 LBN sing 240 n n 
C12 H20 LBN sing 241 n n 
C12 H21 LBN sing 242 n n 
C12 H22 LBN sing 243 n n 
C13 H23 LBN sing 244 n n 
C13 H24 LBN sing 245 n n 
C14 H25 LBN sing 246 n n 
C15 H26 LBN sing 247 n n 
C15 H27 LBN sing 248 n n 
C15 H28 LBN sing 249 n n 
C16 H30 LBN sing 250 n n 
C16 H31 LBN sing 251 n n 
C17 H32 LBN sing 252 n n 
C17 H33 LBN sing 253 n n 
C18 H34 LBN sing 254 n n 
C18 H35 LBN sing 255 n n 
C18 H36 LBN sing 256 n n 
C19 H37 LBN sing 257 n n 
C19 H38 LBN sing 258 n n 
C20 H39 LBN sing 259 n n 
C20 H40 LBN sing 260 n n 
C21 H41 LBN sing 261 n n 
C21 H42 LBN sing 262 n n 
C21 H43 LBN sing 263 n n 
C22 H44 LBN sing 264 n n 
C22 H45 LBN sing 265 n n 
C23 H46 LBN sing 266 n n 
C23 H47 LBN sing 267 n n 
C24 H48 LBN sing 268 n n 
C24 H49 LBN sing 269 n n 
C24 H50 LBN sing 270 n n 
C26 H51 LBN sing 271 n n 
C26 H52 LBN sing 272 n n 
C27 H53 LBN sing 273 n n 
C27 H54 LBN sing 274 n n 
C28 H55 LBN sing 275 n n 
C28 H56 LBN sing 276 n n 
C29 H57 LBN sing 277 n n 
C29 H58 LBN sing 278 n n 
C30 H59 LBN sing 279 n n 
C30 H60 LBN sing 280 n n 
C31 H61 LBN sing 281 n n 
C31 H62 LBN sing 282 n n 
C32 H63 LBN sing 283 n n 
C32 H64 LBN sing 284 n n 
C33 H65 LBN sing 285 n n 
C33 H66 LBN sing 286 n n 
C35 H67 LBN sing 287 n n 
C35 H68 LBN sing 288 n n 
C36 H69 LBN sing 289 n n 
C36 H70 LBN sing 290 n n 
C37 H71 LBN sing 291 n n 
C37 H72 LBN sing 292 n n 
C38 H73 LBN sing 293 n n 
C38 H74 LBN sing 294 n n 
C39 H75 LBN sing 295 n n 
C40 H76 LBN sing 296 n n 
C41 H77 LBN sing 297 n n 
C41 H78 LBN sing 298 n n 
C42 H79 LBN sing 299 n n 
C11 H80 LBN sing 300 n n 
C14 H81 LBN sing 301 n n 
C39 H82 LBN sing 302 n n 
C40 H83 LBN sing 303 n n 
#
_atom_sites.entry_id                     8D63 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LBN A 1 401 401 LBN LBN . 
G 2 LBN B 1 401 401 LBN LBN . 
H 2 LBN C 1 401 401 LBN LBN . 
I 2 LBN D 1 401 401 LBN LBN . 
J 2 LBN E 1 401 401 LBN LBN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 LBN . . . J 2 114.96 116.833 80.546 1 20 ? C1 LBN 401 E 1 
HETATM 2 N N1 LBN . . . J 2 115.745 118.199 86.664 1 20 ? N1 LBN 401 E 1 
HETATM 3 P P1 LBN . . . J 2 116.551 115.801 82.413 1 20 ? P1 LBN 401 E 1 
HETATM 4 C C2 LBN . . . J 2 114.695 116.594 79.032 1 20 ? C2 LBN 401 E 1 
HETATM 5 C C3 LBN . . . J 2 113.525 117.457 78.485 1 20 ? C3 LBN 401 E 1 
HETATM 6 C C4 LBN . . . J 2 114.738 120.618 65.995 1 20 ? C4 LBN 401 E 1 
HETATM 7 C C5 LBN . . . J 2 118.553 118.264 67.321 1 20 ? C5 LBN 401 E 1 
HETATM 8 C C6 LBN . . . J 2 115.453 118 85.212 1 20 ? C6 LBN 401 E 1 
HETATM 9 O O1 LBN . . . J 2 116.254 116.339 80.857 1 20 ? O1 LBN 401 E 1 
HETATM 10 C C7 LBN . . . J 2 115.193 120.419 64.521 1 20 ? C7 LBN 401 E 1 
HETATM 11 C C8 LBN . . . J 2 119.411 118.591 66.069 1 20 ? C8 LBN 401 E 1 
HETATM 12 C C9 LBN . . . J 2 115.66 116.516 84.819 1 20 ? C9 LBN 401 E 1 
HETATM 13 O O2 LBN . . . J 2 115.357 116.371 83.435 1 20 ? O2 LBN 401 E 1 
HETATM 14 C C10 LBN . . . J 2 114.355 121.27 63.524 1 20 ? C10 LBN 401 E 1 
HETATM 15 C C11 LBN . . . J 2 118.698 119.578 65.106 1 20 ? C11 LBN 401 E 1 
HETATM 16 C C12 LBN . . . J 2 115.391 119.57 87.051 1 20 ? C12 LBN 401 E 1 
HETATM 17 O O3 LBN . . . J 2 117.897 116.313 82.876 1 20 ? O3 LBN 401 E 1 
HETATM 18 C C13 LBN . . . J 2 114.877 121.156 62.066 1 20 ? C13 LBN 401 E 1 
HETATM 19 C C14 LBN . . . J 2 119.516 120.887 64.89 1 20 ? C14 LBN 401 E 1 
HETATM 20 C C15 LBN . . . J 2 117.175 117.974 86.912 1 20 ? C15 LBN 401 E 1 
HETATM 21 O O4 LBN . . . J 2 116.553 114.294 82.432 1 20 ? O4 LBN 401 E 1 
HETATM 22 C C16 LBN . . . J 2 114.408 122.338 61.177 1 20 ? C16 LBN 401 E 1 
HETATM 23 C C17 LBN . . . J 2 118.825 122.128 65.531 1 20 ? C17 LBN 401 E 1 
HETATM 24 C C18 LBN . . . J 2 114.949 117.24 87.463 1 20 ? C18 LBN 401 E 1 
HETATM 25 C C19 LBN . . . J 2 113.573 121.865 59.962 1 20 ? C19 LBN 401 E 1 
HETATM 26 C C20 LBN . . . J 2 119.824 123.007 66.348 1 20 ? C20 LBN 401 E 1 
HETATM 27 C C21 LBN . . . J 2 112.63 122.965 59.436 1 20 ? C21 LBN 401 E 1 
HETATM 28 C C22 LBN . . . J 2 119.512 124.525 66.222 1 20 ? C22 LBN 401 E 1 
HETATM 29 C C23 LBN . . . J 2 120.272 125.186 65.048 1 20 ? C23 LBN 401 E 1 
HETATM 30 C C24 LBN . . . J 2 119.986 126.692 64.942 1 20 ? C24 LBN 401 E 1 
HETATM 31 C C25 LBN . . . J 2 112.466 118.005 76.435 1 20 ? C25 LBN 401 E 1 
HETATM 32 O O5 LBN . . . J 2 113.616 117.492 77.078 1 20 ? O5 LBN 401 E 1 
HETATM 33 C C26 LBN . . . J 2 112.178 117.639 74.967 1 20 ? C26 LBN 401 E 1 
HETATM 34 O O6 LBN . . . J 2 111.723 118.716 77.023 1 20 ? O6 LBN 401 E 1 
HETATM 35 C C27 LBN . . . J 2 112.55 118.778 73.995 1 20 ? C27 LBN 401 E 1 
HETATM 36 C C28 LBN . . . J 2 113.649 118.359 72.99 1 20 ? C28 LBN 401 E 1 
HETATM 37 C C29 LBN . . . J 2 113.769 119.358 71.787 1 20 ? C29 LBN 401 E 1 
HETATM 38 C C30 LBN . . . J 2 114.952 118.993 70.821 1 20 ? C30 LBN 401 E 1 
HETATM 39 C C31 LBN . . . J 2 114.462 118.726 69.347 1 20 ? C31 LBN 401 E 1 
HETATM 40 C C32 LBN . . . J 2 115.312 119.516 68.282 1 20 ? C32 LBN 401 E 1 
HETATM 41 C C33 LBN . . . J 2 114.795 119.289 66.821 1 20 ? C33 LBN 401 E 1 
HETATM 42 C C34 LBN . . . J 2 116.268 116.005 77.319 1 20 ? C34 LBN 401 E 1 
HETATM 43 O O7 LBN . . . J 2 115.885 116.952 78.314 1 20 ? O7 LBN 401 E 1 
HETATM 44 C C35 LBN . . . J 2 116.21 116.396 75.802 1 20 ? C35 LBN 401 E 1 
HETATM 45 O O8 LBN . . . J 2 116.632 114.919 77.64 1 20 ? O8 LBN 401 E 1 
HETATM 46 C C36 LBN . . . J 2 116.903 115.336 74.89 1 20 ? C36 LBN 401 E 1 
HETATM 47 C C37 LBN . . . J 2 116.791 115.698 73.369 1 20 ? C37 LBN 401 E 1 
HETATM 48 C C38 LBN . . . J 2 117.885 114.99 72.511 1 20 ? C38 LBN 401 E 1 
HETATM 49 C C39 LBN . . . J 2 117.51 114.939 70.996 1 20 ? C39 LBN 401 E 1 
HETATM 50 C C40 LBN . . . J 2 118.504 115.749 70.117 1 20 ? C40 LBN 401 E 1 
HETATM 51 C C41 LBN . . . J 2 117.78 116.723 69.147 1 20 ? C41 LBN 401 E 1 
HETATM 52 C C42 LBN . . . J 2 118.638 117.052 67.893 1 20 ? C42 LBN 401 E 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           52 
#