data_8D6D # _model_server_result.job_id Xw43EoIf2-PNkWiFCfR1mA _model_server_result.datetime_utc '2024-11-17 11:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8D6D # _exptl.entry_id 8D6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.34 _cell.angle_gamma 90 _cell.entry_id 8D6D _cell.length_a 51.46 _cell.length_b 112.92 _cell.length_c 72.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,L 1 1 B,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 H N N ? 2 J N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8D6D _atom_sites.fract_transf_matrix[1][1] 0.019433 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014678 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 401 401 EDO EDO . D 2 EDO A 1 402 402 EDO EDO . E 3 SO4 A 1 403 403 SO4 SO4 . F 2 EDO A 1 404 404 EDO EDO . G 4 QGY A 1 405 1 QGY DRG . H 2 EDO B 1 401 401 EDO EDO . I 3 SO4 B 1 402 402 SO4 SO4 . J 2 EDO B 1 403 403 EDO EDO . K 4 QGY B 1 404 2 QGY DRG . L 5 HOH A 1 501 28 HOH HOH . L 5 HOH A 2 502 37 HOH HOH . L 5 HOH A 3 503 26 HOH HOH . L 5 HOH A 4 504 41 HOH HOH . L 5 HOH A 5 505 32 HOH HOH . L 5 HOH A 6 506 3 HOH HOH . L 5 HOH A 7 507 39 HOH HOH . L 5 HOH A 8 508 9 HOH HOH . L 5 HOH A 9 509 43 HOH HOH . L 5 HOH A 10 510 6 HOH HOH . L 5 HOH A 11 511 45 HOH HOH . L 5 HOH A 12 512 20 HOH HOH . L 5 HOH A 13 513 36 HOH HOH . L 5 HOH A 14 514 12 HOH HOH . L 5 HOH A 15 515 40 HOH HOH . L 5 HOH A 16 516 44 HOH HOH . L 5 HOH A 17 517 46 HOH HOH . L 5 HOH A 18 518 42 HOH HOH . L 5 HOH A 19 519 8 HOH HOH . M 5 HOH B 1 501 33 HOH HOH . M 5 HOH B 2 502 38 HOH HOH . M 5 HOH B 3 503 27 HOH HOH . M 5 HOH B 4 504 48 HOH HOH . M 5 HOH B 5 505 17 HOH HOH . M 5 HOH B 6 506 34 HOH HOH . M 5 HOH B 7 507 30 HOH HOH . M 5 HOH B 8 508 35 HOH HOH . M 5 HOH B 9 509 25 HOH HOH . M 5 HOH B 10 510 22 HOH HOH . M 5 HOH B 11 511 23 HOH HOH . M 5 HOH B 12 512 21 HOH HOH . M 5 HOH B 13 513 47 HOH HOH . M 5 HOH B 14 514 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 52.888 -2.697 -5.516 1 118.21 ? C1 EDO 401 A 1 HETATM 2 O O1 EDO . . . C 2 52.931 -2.675 -4.084 1 120.96 ? O1 EDO 401 A 1 HETATM 3 C C2 EDO . . . C 2 51.86 -3.712 -6.001 1 115.12 ? C2 EDO 401 A 1 HETATM 4 O O2 EDO . . . C 2 50.564 -3.397 -5.477 1 119.21 ? O2 EDO 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 656 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 4 #