data_8D6E # _model_server_result.job_id cUif94YPpkbioZkYzrH8vA _model_server_result.datetime_utc '2024-11-17 13:56:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8d6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1306}' # _entry.id 8D6E # _exptl.entry_id 8D6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.87 _cell.angle_gamma 90 _cell.entry_id 8D6E _cell.length_a 51.243 _cell.length_b 112.014 _cell.length_c 72.978 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8D6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,V 1 1 B,M,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 L N N ? 5 M N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8D6E _atom_sites.fract_transf_matrix[1][1] 0.019515 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007053 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008927 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 B 1 401 401 SO4 SO4 . D 3 QGI B 1 402 501 QGI DRG . E 4 GOL B 1 403 601 GOL GOL . F 5 EDO B 1 404 701 EDO EDO . G 5 EDO B 1 405 801 EDO EDO . H 5 EDO B 1 406 901 EDO EDO . I 5 EDO B 1 407 1001 EDO EDO . J 4 GOL B 1 408 1101 GOL GOL . K 4 GOL B 1 409 1201 GOL GOL . L 5 EDO B 1 410 1401 EDO EDO . M 5 EDO A 1 1301 1301 EDO EDO . N 2 SO4 A 1 1302 401 SO4 SO4 . O 3 QGI A 1 1303 501 QGI DRG . P 5 EDO A 1 1304 601 EDO EDO . Q 5 EDO A 1 1305 701 EDO EDO . R 5 EDO A 1 1306 801 EDO EDO . S 5 EDO A 1 1307 901 EDO EDO . T 5 EDO A 1 1308 1001 EDO EDO . U 5 EDO A 1 1309 1101 EDO EDO . V 6 HOH B 1 501 30 HOH HOH . V 6 HOH B 2 502 85 HOH HOH . V 6 HOH B 3 503 82 HOH HOH . V 6 HOH B 4 504 69 HOH HOH . V 6 HOH B 5 505 93 HOH HOH . V 6 HOH B 6 506 78 HOH HOH . V 6 HOH B 7 507 71 HOH HOH . V 6 HOH B 8 508 4 HOH HOH . V 6 HOH B 9 509 88 HOH HOH . V 6 HOH B 10 510 90 HOH HOH . V 6 HOH B 11 511 13 HOH HOH . V 6 HOH B 12 512 65 HOH HOH . V 6 HOH B 13 513 77 HOH HOH . V 6 HOH B 14 514 21 HOH HOH . V 6 HOH B 15 515 25 HOH HOH . V 6 HOH B 16 516 83 HOH HOH . V 6 HOH B 17 517 76 HOH HOH . V 6 HOH B 18 518 79 HOH HOH . V 6 HOH B 19 519 10 HOH HOH . V 6 HOH B 20 520 2 HOH HOH . V 6 HOH B 21 521 80 HOH HOH . V 6 HOH B 22 522 75 HOH HOH . V 6 HOH B 23 523 81 HOH HOH . V 6 HOH B 24 524 12 HOH HOH . V 6 HOH B 25 525 29 HOH HOH . V 6 HOH B 26 526 17 HOH HOH . V 6 HOH B 27 527 95 HOH HOH . V 6 HOH B 28 528 6 HOH HOH . V 6 HOH B 29 529 74 HOH HOH . V 6 HOH B 30 530 92 HOH HOH . V 6 HOH B 31 531 86 HOH HOH . V 6 HOH B 32 532 7 HOH HOH . V 6 HOH B 33 533 9 HOH HOH . V 6 HOH B 34 534 38 HOH HOH . V 6 HOH B 35 535 24 HOH HOH . V 6 HOH B 36 536 16 HOH HOH . V 6 HOH B 37 537 68 HOH HOH . V 6 HOH B 38 538 66 HOH HOH . V 6 HOH B 39 539 64 HOH HOH . V 6 HOH B 40 540 67 HOH HOH . V 6 HOH B 41 541 23 HOH HOH . V 6 HOH B 42 542 73 HOH HOH . V 6 HOH B 43 543 89 HOH HOH . V 6 HOH B 44 544 91 HOH HOH . V 6 HOH B 45 545 70 HOH HOH . V 6 HOH B 46 546 63 HOH HOH . V 6 HOH B 47 547 62 HOH HOH . W 6 HOH A 1 1401 46 HOH HOH . W 6 HOH A 2 1402 39 HOH HOH . W 6 HOH A 3 1403 32 HOH HOH . W 6 HOH A 4 1404 37 HOH HOH . W 6 HOH A 5 1405 20 HOH HOH . W 6 HOH A 6 1406 42 HOH HOH . W 6 HOH A 7 1407 55 HOH HOH . W 6 HOH A 8 1408 56 HOH HOH . W 6 HOH A 9 1409 22 HOH HOH . W 6 HOH A 10 1410 1 HOH HOH . W 6 HOH A 11 1411 28 HOH HOH . W 6 HOH A 12 1412 41 HOH HOH . W 6 HOH A 13 1413 58 HOH HOH . W 6 HOH A 14 1414 14 HOH HOH . W 6 HOH A 15 1415 49 HOH HOH . W 6 HOH A 16 1416 87 HOH HOH . W 6 HOH A 17 1417 96 HOH HOH . W 6 HOH A 18 1418 47 HOH HOH . W 6 HOH A 19 1419 60 HOH HOH . W 6 HOH A 20 1420 52 HOH HOH . W 6 HOH A 21 1421 19 HOH HOH . W 6 HOH A 22 1422 8 HOH HOH . W 6 HOH A 23 1423 26 HOH HOH . W 6 HOH A 24 1424 40 HOH HOH . W 6 HOH A 25 1425 48 HOH HOH . W 6 HOH A 26 1426 53 HOH HOH . W 6 HOH A 27 1427 45 HOH HOH . W 6 HOH A 28 1428 57 HOH HOH . W 6 HOH A 29 1429 11 HOH HOH . W 6 HOH A 30 1430 35 HOH HOH . W 6 HOH A 31 1431 61 HOH HOH . W 6 HOH A 32 1432 3 HOH HOH . W 6 HOH A 33 1433 5 HOH HOH . W 6 HOH A 34 1434 54 HOH HOH . W 6 HOH A 35 1435 15 HOH HOH . W 6 HOH A 36 1436 31 HOH HOH . W 6 HOH A 37 1437 36 HOH HOH . W 6 HOH A 38 1438 27 HOH HOH . W 6 HOH A 39 1439 18 HOH HOH . W 6 HOH A 40 1440 50 HOH HOH . W 6 HOH A 41 1441 51 HOH HOH . W 6 HOH A 42 1442 84 HOH HOH . W 6 HOH A 43 1443 33 HOH HOH . W 6 HOH A 44 1444 34 HOH HOH . W 6 HOH A 45 1445 94 HOH HOH . W 6 HOH A 46 1446 59 HOH HOH . W 6 HOH A 47 1447 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . R 5 11.868 -0.877 17.228 1 84.82 ? C1 EDO 1306 A 1 HETATM 2 O O1 EDO . . . R 5 12.985 -1.724 17.511 1 83.97 ? O1 EDO 1306 A 1 HETATM 3 C C2 EDO . . . R 5 12.273 0.173 16.206 1 70.8 ? C2 EDO 1306 A 1 HETATM 4 O O2 EDO . . . R 5 12.737 -0.471 15.019 1 103.22 ? O2 EDO 1306 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #